# HG changeset patch # User rnateam # Date 1529608033 14400 # Node ID 7c7a2a381dfebc568b0a117f8fdb0dc28922890c # Parent aa9579837a2e3ae49ea381078ae6023a51bc09e2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0 diff -r aa9579837a2e -r 7c7a2a381dfe rcas.xml --- a/rcas.xml Thu Apr 13 12:36:05 2017 -0400 +++ b/rcas.xml Thu Jun 21 15:07:13 2018 -0400 @@ -1,206 +1,246 @@ - - + + - RNA Centric Annotation System - bioconductor-rcas + bioconductor-rcas - + #if $analysis_type.gsea_set.run_gsea == "TRUE": + && + mv Table*GSEA.data.tsv GSEA.data.tsv + #end if + #else: + Rscript '$script_file' + #end if + ]]> - library("RCAS") - - runReport(queryFilePath = '${input_BED}', - - gffFilePath = '${input_GTF}', - - #if $choice.run_PATHrich == "TRUE": - msigdbFilePath = '${choice.input_human_msigdb_gmt}', - #end if - - annotationSummary = ${run_anot}, - - goAnalysis = ${run_GOrich}, - - msigdbAnalysis = ${choice.run_PATHrich}, - - motifAnalysis = ${run_motif}, - - genomeVersion = '${genomeVersion}', - - outDir = getwd(), - - printProcessedTables = TRUE, - - sampleN = '${downsampling}', - - selfContained = TRUE) + - + + + + - - - - - - - - - + + + + + + + - - + + + + + + + + + + + + + - + + + + - - + + + + - + + analysis_type["analysis_type_selector"] == "single_set_analysis" + - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_anot == True + run_annot is True and analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['output_raw_tables'] is True - run_GOrich == True + analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['run_go'] is True and analysis_type['output_raw_tables'] is True - run_GOrich == True + analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['run_go'] is True and analysis_type['output_raw_tables'] is True - run_GOrich == True + analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['run_go'] is True and analysis_type['output_raw_tables'] is True - choice['run_PATHrich'] == "TRUE" + analysis_type["analysis_type_selector"] == "single_set_analysis" and analysis_type['gsea_set']['run_gsea'] is True and analysis_type['output_raw_tables'] is True - - run_motif == True + + analysis_type["analysis_type_selector"] == "multi_set_analysis" - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - + + + + + + + + + + - +4. Motif analysis results (no table output in 1.5.4.) + + ]]> 10.1093/nar/gkx120 diff -r aa9579837a2e -r 7c7a2a381dfe readme.rst --- a/readme.rst Thu Apr 13 12:36:05 2017 -0400 +++ b/readme.rst Thu Jun 21 15:07:13 2018 -0400 @@ -3,14 +3,18 @@ - the dependencies of the tool are handled by the conda dependency resolver -- to install the dependencies, the galaxy administrator needs to configure to ensure the conda channels - bioconda, r, conda-forge, defaults +- to install the dependencies, the galaxy administrator needs to enable the conda channels - bioconda, r, conda-forge, defaults - by default, the conda installation includes hg19 -- to enable analysis for mm9, ce10, dm3, the administrator needs to separately install the relevant packages from the channel bioconda +- to enable analysis for hg38, mm9, mm10, ce10, or dm3, the administrator needs to separately install the relevant packages from the bioconda channel + + - bioconductor-bsgenome.hsapiens.ucsc.hg38 + - bioconductor-bsgenome.mmusculus.ucsc.mm9 + - bioconductor-bsgenome.mmusculus.ucsc.mm10 + - bioconductor-bsgenome.celegans.ucsc.ce10 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3 - - bioconductor-bsgenome.celegans.ucsc.ce10 - - bioconductor-bsgenome.mmusculus.ucsc.mm9 - bioconductor-org.mm.eg.db - bioconductor-org.ce.eg.db - bioconductor-org.dm.eg.db + diff -r aa9579837a2e -r 7c7a2a381dfe test-data/EIF4A3Sauliere20121a.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/EIF4A3Sauliere20121a.bed Thu Jun 21 15:07:13 2018 -0400 @@ -0,0 +1,2373 @@ +chr1 13007 13055 . 0 + +chr1 13007 13055 . 0 + +chr1 13007 13055 . 0 + +chr1 13007 13055 . 0 + +chr1 13007 13055 . 0 + +chr1 13007 13055 . 0 + +chr1 111969 111991 . 0 - +chr1 111969 111991 . 0 - +chr1 111969 111991 . 0 - +chr1 111969 111991 . 0 - +chr1 127006 127017 . 0 - +chr1 127006 127017 . 0 - +chr1 127006 127017 . 0 - +chr1 127018 127043 . 0 - +chr1 127018 127043 . 0 - +chr1 127018 127043 . 0 - +chr1 142944 142978 . 0 - +chr1 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0.000149932530361337 0.000149932530361337 fiveUTRs +356 56 0.000849617672047578 0.000849617672047578 fiveUTRs 357 57 0 0 fiveUTRs 358 58 0 0 fiveUTRs 359 59 0 0 fiveUTRs @@ -394,31 +394,31 @@ 393 93 0 0 fiveUTRs 394 94 0 0 fiveUTRs 395 95 0.0053475935828877 0.0053475935828877 fiveUTRs -396 96 0.0053475935828877 0.0053475935828877 fiveUTRs +396 96 0.00128342245989305 0.00128342245989305 fiveUTRs 397 97 0 0 fiveUTRs 398 98 0 0 fiveUTRs 399 99 0 0 fiveUTRs 400 100 0 0 fiveUTRs -401 1 0.00146584579302257 0.000655161570172119 introns +401 1 0.000641307534447376 0.000415732621160495 introns 402 2 0.00058633831720903 0.000414543003364378 introns 403 3 0.00058633831720903 0.000414543003364378 introns 404 4 0.00058633831720903 0.000414543003364378 introns 405 5 0.00058633831720903 0.000414543003364378 introns 406 6 0.00058633831720903 0.000414543003364378 introns 407 7 0.00058633831720903 0.000414543003364378 introns -408 8 0.000879507475813544 0.000507634945846361 introns -409 9 0.000879507475813544 0.000507634945846361 introns +408 8 0.00058633831720903 0.000414543003364378 introns +409 9 0.000729347662869768 0.000438461394661686 introns 410 10 0.00058633831720903 0.000414543003364378 introns 411 11 0.00058633831720903 0.000414543003364378 introns 412 12 0.00058633831720903 0.000414543003364378 introns 413 13 0.00058633831720903 0.000414543003364378 introns 414 14 0.00058633831720903 0.000414543003364378 introns -415 15 0.000879507475813544 0.000507634945846361 introns -416 16 0.00527704485488127 0.00124070711704561 introns +415 15 0.000657649734166885 0.000420602777330729 introns +416 16 0.00305054394764157 0.000744054607064372 introns 417 17 0.00058633831720903 0.000414543003364378 introns -418 18 0.000879507475813544 0.000507634945846361 introns +418 18 0.000601516012068664 0.000414814470034371 introns 419 19 0.00058633831720903 0.000414543003364378 introns -420 20 0.00058633831720903 0.000414543003364378 introns +420 20 0.000234535326883612 0.000165817201345751 introns 421 21 0 0 introns 422 22 0 0 introns 423 23 0 0 introns @@ -433,23 +433,23 @@ 432 32 0 0 introns 433 33 0 0 introns 434 34 0 0 introns -435 35 0.00117267663441806 0.000586080340375888 introns +435 35 3.19580067622416e-05 1.59724411738973e-05 introns 436 36 0 0 introns 437 37 0 0 introns -438 38 0.000293169158604515 0.000293169158604515 introns +438 38 9.77230528681716e-05 9.77230528681716e-05 introns 439 39 0 0 introns 440 40 0 0 introns 441 41 0 0 introns -442 42 0.000293169158604515 0.000293169158604515 introns -443 43 0.00058633831720903 0.000414543003364378 introns +442 42 3.25743509560572e-05 3.25743509560572e-05 introns +443 43 8.65564666502808e-05 7.67324005632609e-05 introns 444 44 0 0 introns 445 45 0 0 introns 446 46 0 0 introns 447 47 0 0 introns 448 48 0 0 introns 449 49 0 0 introns -450 50 0.000879507475813544 0.000507634945846361 introns -451 51 0.00058633831720903 0.000414543003364378 introns +450 50 2.78051907354767e-05 1.60487593567991e-05 introns +451 51 1.82185024269324e-05 1.28806452588006e-05 introns 452 52 0 0 introns 453 53 0 0 introns 454 54 0 0 introns @@ -457,38 +457,38 @@ 456 56 0 0 introns 457 57 0 0 introns 458 58 0 0 introns -459 59 0.000293169158604515 0.000293169158604515 introns -460 60 0.000879507475813544 0.000507634945846361 introns +459 59 7.71497785801355e-05 7.71497785801355e-05 introns +460 60 2.21040238630388e-05 1.27580211257683e-05 introns 461 61 0 0 introns -462 62 0.00058633831720903 0.000414543003364378 introns -463 63 0.00058633831720903 0.000414543003364378 introns +462 62 0.00033278661246999 0.000235281164071674 introns +463 63 6.51487019121144e-05 4.60603337071531e-05 introns 464 64 0 0 introns 465 65 0 0 introns -466 66 0.000879507475813544 0.000507634945846361 introns +466 66 0.000197642129396302 0.000114075268729519 introns 467 67 0 0 introns -468 68 0.000293169158604515 0.000293169158604515 introns -469 69 0.000293169158604515 0.000293169158604515 introns +468 68 0.000216019380024379 0.000216019380024379 introns +469 69 3.25743509560572e-05 3.25743509560572e-05 introns 470 70 0 0 introns 471 71 0 0 introns 472 72 0 0 introns 473 73 0 0 introns 474 74 0 0 introns 475 75 0 0 introns -476 76 0.00058633831720903 0.000414543003364378 introns +476 76 0.000130297403824229 9.21206674143061e-05 introns 477 77 0.00058633831720903 0.000414543003364378 introns -478 78 0.000879507475813544 0.000507634945846361 introns +478 78 0.000833217608665463 0.0004824006488587 introns 479 79 0.000879507475813544 0.000507634945846361 introns 480 80 0.000879507475813544 0.000507634945846361 introns -481 81 0.000879507475813544 0.000507634945846361 introns -482 82 0.000293169158604515 0.000293169158604515 introns -483 83 0.000293169158604515 0.000293169158604515 introns +481 81 0.000781784422945373 0.0004529918006519 introns +482 82 0.000277739202888488 0.000277739202888488 introns +483 83 0.000105540897097625 0.000105540897097625 introns 484 84 0.000293169158604515 0.000293169158604515 introns 485 85 0.000293169158604515 0.000293169158604515 introns 486 86 0.000293169158604515 0.000293169158604515 introns -487 87 0.000293169158604515 0.000293169158604515 introns +487 87 7.89301580858309e-05 7.89301580858309e-05 introns 488 88 0 0 introns -489 89 0.00058633831720903 0.000414543003364378 introns -490 90 0.00058633831720903 0.000414543003364378 introns +489 89 0.000335050466976588 0.000236881716208216 introns +490 90 0.000335050466976588 0.000236881716208216 introns 491 91 0 0 introns 492 92 0 0 introns 493 93 0 0 introns @@ -534,7 +534,7 @@ 533 33 0 0 cds 534 34 0 0 cds 535 35 0 0 cds -536 36 0.000630914826498423 0.000630914826498423 cds +536 36 0 0 cds 537 37 0.000630914826498423 0.000630914826498423 cds 538 38 0.000630914826498423 0.000630914826498423 cds 539 39 0.000630914826498423 0.000630914826498423 cds @@ -573,7 +573,7 @@ 572 72 0 0 cds 573 73 0 0 cds 574 74 0 0 cds -575 75 0 0 cds +575 75 0.000315457413249211 0.000315457413249211 cds 576 76 0.000630914826498423 0.000630914826498423 cds 577 77 0.000630914826498423 0.000630914826498423 cds 578 78 0.000630914826498423 0.000630914826498423 cds @@ -585,7 +585,7 @@ 584 84 0.000630914826498423 0.000630914826498423 cds 585 85 0.000630914826498423 0.000630914826498423 cds 586 86 0.000630914826498423 0.000630914826498423 cds -587 87 0.000630914826498423 0.000630914826498423 cds +587 87 0 0 cds 588 88 0 0 cds 589 89 0 0 cds 590 90 0 0 cds @@ -603,9 +603,9 @@ 602 2 0 0 threeUTRs 603 3 0 0 threeUTRs 604 4 0 0 threeUTRs -605 5 0.00462962962962963 0.00462962962962963 threeUTRs +605 5 0.000868055555555556 0.000868055555555556 threeUTRs 606 6 0.00462962962962963 0.00462962962962963 threeUTRs -607 7 0.00462962962962963 0.00462962962962963 threeUTRs +607 7 0.00330687830687831 0.00330687830687831 threeUTRs 608 8 0 0 threeUTRs 609 9 0 0 threeUTRs 610 10 0 0 threeUTRs @@ -613,31 +613,31 @@ 612 12 0 0 threeUTRs 613 13 0 0 threeUTRs 614 14 0 0 threeUTRs -615 15 0.00462962962962963 0.00462962962962963 threeUTRs +615 15 0.00201288244766506 0.00201288244766506 threeUTRs 616 16 0 0 threeUTRs 617 17 0 0 threeUTRs 618 18 0 0 threeUTRs 619 19 0 0 threeUTRs 620 20 0 0 threeUTRs -621 21 0.00462962962962963 0.00462962962962963 threeUTRs +621 21 0.00107665805340224 0.00107665805340224 threeUTRs 622 22 0 0 threeUTRs 623 23 0 0 threeUTRs 624 24 0 0 threeUTRs -625 25 0.00925925925925926 0.00653204102054547 threeUTRs +625 25 0.00462962962962963 0.00326602051027274 threeUTRs 626 26 0.00925925925925926 0.00653204102054547 threeUTRs 627 27 0.00925925925925926 0.00653204102054547 threeUTRs 628 28 0.00925925925925926 0.00653204102054547 threeUTRs 629 29 0.00925925925925926 0.00653204102054547 threeUTRs -630 30 0.0138888888888889 0.00798137006782874 threeUTRs +630 30 0.0099400871459695 0.00656296007905232 threeUTRs 631 31 0.00925925925925926 0.00653204102054547 threeUTRs 632 32 0.00925925925925926 0.00653204102054547 threeUTRs -633 33 0.00925925925925926 0.00653204102054547 threeUTRs +633 33 0 0 threeUTRs 634 34 0 0 threeUTRs 635 35 0 0 threeUTRs 636 36 0 0 threeUTRs -637 37 0.00462962962962963 0.00462962962962963 threeUTRs -638 38 0.00462962962962963 0.00462962962962963 threeUTRs -639 39 0.00462962962962963 0.00462962962962963 threeUTRs +637 37 0.000672043010752688 0.000672043010752688 threeUTRs +638 38 0.00083485124468731 0.00083485124468731 threeUTRs +639 39 0.000798212005108557 0.000798212005108557 threeUTRs 640 40 0 0 threeUTRs 641 41 0 0 threeUTRs 642 42 0 0 threeUTRs @@ -645,8 +645,8 @@ 644 44 0 0 threeUTRs 645 45 0 0 threeUTRs 646 46 0 0 threeUTRs -647 47 0.00462962962962963 0.00462962962962963 threeUTRs -648 48 0.00462962962962963 0.00462962962962963 threeUTRs +647 47 0.00303497942386831 0.00303497942386831 threeUTRs +648 48 0.00169753086419753 0.00169753086419753 threeUTRs 649 49 0 0 threeUTRs 650 50 0 0 threeUTRs 651 51 0 0 threeUTRs @@ -654,20 +654,20 @@ 653 53 0 0 threeUTRs 654 54 0 0 threeUTRs 655 55 0 0 threeUTRs -656 56 0.00462962962962963 0.00462962962962963 threeUTRs +656 56 0.00115740740740741 0.00115740740740741 threeUTRs 657 57 0.00462962962962963 0.00462962962962963 threeUTRs 658 58 0.00462962962962963 0.00462962962962963 threeUTRs 659 59 0.00462962962962963 0.00462962962962963 threeUTRs 660 60 0 0 threeUTRs 661 61 0 0 threeUTRs -662 62 0.00462962962962963 0.00462962962962963 threeUTRs +662 62 0.000462962962962963 0.000462962962962963 threeUTRs 663 63 0.00462962962962963 0.00462962962962963 threeUTRs 664 64 0.00462962962962963 0.00462962962962963 threeUTRs -665 65 0.00462962962962963 0.00462962962962963 threeUTRs +665 65 0.00208333333333333 0.00208333333333333 threeUTRs 666 66 0 0 threeUTRs 667 67 0 0 threeUTRs 668 68 0.00462962962962963 0.00462962962962963 threeUTRs -669 69 0 0 threeUTRs +669 69 0.000220458553791887 0.000220458553791887 threeUTRs 670 70 0 0 threeUTRs 671 71 0 0 threeUTRs 672 72 0 0 threeUTRs @@ -679,9 +679,9 @@ 678 78 0 0 threeUTRs 679 79 0 0 threeUTRs 680 80 0 0 threeUTRs -681 81 0.00462962962962963 0.00462962962962963 threeUTRs +681 81 0.00154320987654321 0.00154320987654321 threeUTRs 682 82 0 0 threeUTRs -683 83 0.00462962962962963 0.00462962962962963 threeUTRs +683 83 0.00185185185185185 0.00185185185185185 threeUTRs 684 84 0.00462962962962963 0.00462962962962963 threeUTRs 685 85 0.00462962962962963 0.00462962962962963 threeUTRs 686 86 0.00462962962962963 0.00462962962962963 threeUTRs @@ -690,12 +690,12 @@ 689 89 0.00462962962962963 0.00462962962962963 threeUTRs 690 90 0 0 threeUTRs 691 91 0 0 threeUTRs -692 92 0.00462962962962963 0.00462962962962963 threeUTRs +692 92 0.00106837606837607 0.00106837606837607 threeUTRs 693 93 0.00462962962962963 0.00462962962962963 threeUTRs -694 94 0.00462962962962963 0.00462962962962963 threeUTRs -695 95 0.0138888888888889 0.00798137006782874 threeUTRs +694 94 0.00178062678062678 0.00178062678062678 threeUTRs +695 95 0.0100961538461538 0.0064528653708784 threeUTRs 696 96 0.00925925925925926 0.00653204102054547 threeUTRs -697 97 0.00925925925925926 0.00653204102054547 threeUTRs +697 97 0.00528846153846154 0.00381457857454658 threeUTRs 698 98 0 0 threeUTRs -699 99 0.00462962962962963 0.00462962962962963 threeUTRs -700 100 0.0138888888888889 0.00798137006782874 threeUTRs +699 99 0.0085978835978836 0.00608355257726876 threeUTRs +700 100 0.00798105980743552 0.00518483909147582 threeUTRs diff -r aa9579837a2e -r 7c7a2a381dfe test-data/goBP.data.tsv --- a/test-data/goBP.data.tsv Thu Apr 13 12:36:05 2017 -0400 +++ b/test-data/goBP.data.tsv Thu Jun 21 15:07:13 2018 -0400 @@ -1,33 +1,39 @@ Term Significant Expected bonferroni bh foldEnrichment -GO:0006139 nucleobase-containing compound metabolic... 6 4.2 1 0.596363636363636 1.43 -GO:0006725 cellular aromatic compound metabolic pro... 6 4.2 1 0.596363636363636 1.43 -GO:0046483 heterocycle metabolic process 6 4.2 1 0.596363636363636 1.43 -GO:1901360 organic cyclic compound metabolic proces... 6 4.2 1 0.596363636363636 1.43 -GO:0019538 protein metabolic process 6 4.4 1 0.596363636363636 1.36 -GO:0050794 regulation of cellular process 8 6 1 0.596363636363636 1.33 -GO:0044260 cellular macromolecule metabolic process 7 5.4 1 0.596363636363636 1.3 -GO:0034641 cellular nitrogen compound metabolic pro... 6 4.6 1 0.596363636363636 1.3 -GO:0050789 regulation of biological process 8 6.2 1 0.596363636363636 1.29 -GO:0065007 biological regulation 8 6.2 1 0.596363636363636 1.29 -GO:0009059 macromolecule biosynthetic process 5 4 1 0.596363636363636 1.25 -GO:0031323 regulation of cellular metabolic process 5 4 1 0.596363636363636 1.25 -GO:0034645 cellular macromolecule biosynthetic proc... 5 4 1 0.596363636363636 1.25 -GO:0044710 single-organism metabolic process 5 4 1 0.596363636363636 1.25 -GO:0080090 regulation of primary metabolic process 5 4 1 0.596363636363636 1.25 -GO:0043170 macromolecule metabolic process 7 5.8 1 0.596363636363636 1.21 -GO:0006807 nitrogen compound metabolic process 6 5 1 0.596363636363636 1.2 -GO:0050896 response to stimulus 6 5 1 0.596363636363636 1.2 -GO:0044271 cellular nitrogen compound biosynthetic ... 5 4.2 1 0.596363636363636 1.19 -GO:0051716 cellular response to stimulus 5 4.2 1 0.596363636363636 1.19 -GO:0044237 cellular metabolic process 8 6.8 1 0.596363636363636 1.18 -GO:0019222 regulation of metabolic process 5 4.4 1 0.653913043478261 1.14 -GO:0009987 cellular process 10 9.2 1 0.596363636363636 1.09 -GO:0008152 metabolic process 8 7.6 1 0.687407407407407 1.05 -GO:0009058 biosynthetic process 5 4.8 1 0.687407407407407 1.04 -GO:0044249 cellular biosynthetic process 5 4.8 1 0.687407407407407 1.04 -GO:1901576 organic substance biosynthetic process 5 4.8 1 0.687407407407407 1.04 -GO:0044238 primary metabolic process 7 7 1 0.728275862068966 1 -GO:0071704 organic substance metabolic process 7 7 1 0.728275862068966 1 -GO:0008150 biological_process 10 10 1 1 1 -GO:0044699 single-organism process 8 8.2 1 0.774193548387097 0.98 -GO:0044763 single-organism cellular process 8 8.2 1 0.774193548387097 0.98 +GO:0010467 gene expression 6 4.15 1 0.686923076923077 1.45 +GO:0006139 nucleobase-containing compound metabolic... 6 4.36 1 0.686923076923077 1.38 +GO:0006464 cellular protein modification process 6 4.36 1 0.686923076923077 1.38 +GO:0006725 cellular aromatic compound metabolic pro... 6 4.36 1 0.686923076923077 1.38 +GO:0036211 protein modification process 6 4.36 1 0.686923076923077 1.38 +GO:0046483 heterocycle metabolic process 6 4.36 1 0.686923076923077 1.38 +GO:1901360 organic cyclic compound metabolic proces... 6 4.36 1 0.686923076923077 1.38 +GO:0009059 macromolecule biosynthetic process 6 4.57 1 0.686923076923077 1.31 +GO:0034645 cellular macromolecule biosynthetic proc... 6 4.57 1 0.686923076923077 1.31 +GO:0043412 macromolecule modification 6 4.57 1 0.686923076923077 1.31 +GO:0044271 cellular nitrogen compound biosynthetic ... 6 4.77 1 0.686923076923077 1.26 +GO:0050896 response to stimulus 7 5.6 1 0.686923076923077 1.25 +GO:0050789 regulation of biological process 8 6.43 1 0.686923076923077 1.24 +GO:0065007 biological regulation 8 6.64 1 0.686923076923077 1.2 +GO:0034641 cellular nitrogen compound metabolic pro... 6 4.98 1 0.686923076923077 1.2 +GO:0051171 regulation of nitrogen compound metaboli... 5 4.15 1 0.686923076923077 1.2 +GO:0060255 regulation of macromolecule metabolic pr... 5 4.15 1 0.686923076923077 1.2 +GO:0044267 cellular protein metabolic process 6 5.19 1 0.686923076923077 1.16 +GO:0019222 regulation of metabolic process 5 4.36 1 0.686923076923077 1.15 +GO:0031323 regulation of cellular metabolic process 5 4.36 1 0.686923076923077 1.15 +GO:0080090 regulation of primary metabolic process 5 4.36 1 0.686923076923077 1.15 +GO:0050794 regulation of cellular process 7 6.23 1 0.686923076923077 1.12 +GO:0009058 biosynthetic process 6 5.4 1 0.686923076923077 1.11 +GO:0044249 cellular biosynthetic process 6 5.4 1 0.686923076923077 1.11 +GO:1901576 organic substance biosynthetic process 6 5.4 1 0.686923076923077 1.11 +GO:0009987 cellular process 11 9.96 1 0.686923076923077 1.1 +GO:0051716 cellular response to stimulus 5 4.57 1 0.707586206896552 1.09 +GO:0019538 protein metabolic process 6 5.6 1 0.707586206896552 1.07 +GO:0044260 cellular macromolecule metabolic process 7 6.64 1 0.707586206896552 1.05 +GO:0008150 biological_process 11 11 1 1 1 +GO:0043170 macromolecule metabolic process 7 7.06 1 0.836 0.99 +GO:1901564 organonitrogen compound metabolic proces... 6 6.43 1 0.87875 0.93 +GO:0032501 multicellular organismal process 4 4.36 1 0.87875 0.92 +GO:0006807 nitrogen compound metabolic process 7 7.68 1 0.932727272727273 0.91 +GO:0044237 cellular metabolic process 7 7.89 1 0.944864864864865 0.89 +GO:0008152 metabolic process 7 8.3 1 0.944864864864865 0.84 +GO:0044238 primary metabolic process 7 8.3 1 0.944864864864865 0.84 +GO:0071704 organic substance metabolic process 7 8.3 1 0.944864864864865 0.84 diff -r aa9579837a2e -r 7c7a2a381dfe test-data/goCC.data.tsv --- a/test-data/goCC.data.tsv Thu Apr 13 12:36:05 2017 -0400 +++ b/test-data/goCC.data.tsv Thu Jun 21 15:07:13 2018 -0400 @@ -1,18 +1,18 @@ Term Significant Expected bonferroni bh foldEnrichment -GO:0044446 intracellular organelle part 10 3.97 0.001054 0.000935 2.52 -GO:0044422 organelle part 10 4.15 0.00187 0.000935 2.41 -GO:0043231 intracellular membrane-bounded organelle 11 6.13 0.01156 0.00385333333333333 1.79 -GO:0043227 membrane-bounded organelle 11 6.49 0.02448 0.00612 1.69 -GO:0043229 intracellular organelle 11 6.85 0.04896 0.009792 1.61 -GO:0005737 cytoplasm 10 6.31 0.21097 0.0234411111111111 1.58 -GO:0043226 organelle 11 7.21 0.09401 0.0156683333333333 1.53 -GO:0005622 intracellular 11 7.57 0.17408 0.02176 1.45 -GO:0044424 intracellular part 11 7.57 0.17408 0.02176 1.45 -GO:0044444 cytoplasmic part 6 4.33 1 0.2988175 1.39 -GO:0005623 cell 11 9.2 1 0.176042727272727 1.2 -GO:0044464 cell part 11 9.2 1 0.176042727272727 1.2 +GO:0044422 organelle part 11 4.71 0.000357 0.0001785 2.34 +GO:0044446 intracellular organelle part 11 4.71 0.000357 0.0001785 2.34 +GO:0043231 intracellular membrane-bounded organelle 11 5.94 0.00782 0.00260666666666667 1.85 +GO:0044444 cytoplasmic part 9 5.06 0.17493 0.02499 1.78 +GO:0043227 membrane-bounded organelle 11 6.29 0.01666 0.004165 1.75 +GO:0043226 organelle 11 6.98 0.06375 0.010625 1.58 +GO:0043229 intracellular organelle 11 6.98 0.06375 0.010625 1.58 +GO:0005737 cytoplasm 10 6.63 0.35955 0.035955 1.51 +GO:0005622 intracellular 11 7.86 0.28016 0.0311288888888889 1.4 +GO:0044424 intracellular part 11 7.86 0.28016 0.0311288888888889 1.4 +GO:0005623 cell 11 9.25 1 0.175355 1.19 +GO:0044464 cell part 11 9.25 1 0.175355 1.19 GO:0005575 cellular_component 11 11 1 1 1 -GO:0016020 membrane 6 6.31 1 0.927794615384615 0.95 -GO:0044425 membrane part 4 5.23 1 1 0.76 -GO:0016021 integral component of membrane 2 4.33 1 1 0.46 -GO:0031224 intrinsic component of membrane 2 4.33 1 1 0.46 +GO:0016020 membrane 6 6.11 1 0.863364615384615 0.98 +GO:0044425 membrane part 4 5.06 1 1 0.79 +GO:0016021 integral component of membrane 2 4.19 1 1 0.48 +GO:0031224 intrinsic component of membrane 2 4.19 1 1 0.48 diff -r aa9579837a2e -r 7c7a2a381dfe test-data/goMF.data.tsv --- a/test-data/goMF.data.tsv Thu Apr 13 12:36:05 2017 -0400 +++ b/test-data/goMF.data.tsv Thu Jun 21 15:07:13 2018 -0400 @@ -1,5 +1,5 @@ Term Significant Expected bonferroni bh foldEnrichment -GO:0005515 protein binding 10 7.13 0.164 0.164 1.4 -GO:0005488 binding 11 9.78 0.944 0.472 1.12 +GO:0005515 protein binding 10 7.33 0.216 0.216 1.36 +GO:0005488 binding 11 10.19 1 0.78 1.08 GO:0003674 molecular_function 11 11 1 1 1 GO:0043167 ion binding 5 5.09 1 0.872 0.98 diff -r aa9579837a2e -r 7c7a2a381dfe test-data/hg19.sample.gtf --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hg19.sample.gtf Thu Jun 21 15:07:13 2018 -0400 @@ -0,0 +1,1000 @@ +1 pseudogene gene 11869 14412 . + . gene_id "ENSG00000223972"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; +1 processed_transcript transcript 11869 14409 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; +1 processed_transcript exon 11869 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; exon_number "1"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; exon_id "ENSE00002234944"; +1 processed_transcript exon 12613 12721 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; exon_number "2"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; exon_id "ENSE00003582793"; +1 processed_transcript exon 13221 14409 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000456328"; exon_number "3"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; exon_id "ENSE00002312635"; +1 transcribed_unprocessed_pseudogene transcript 11872 14412 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; transcript_source "ensembl"; +1 transcribed_unprocessed_pseudogene exon 11872 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; exon_number "1"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; transcript_source "ensembl"; exon_id "ENSE00002234632"; +1 transcribed_unprocessed_pseudogene exon 12613 12721 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; exon_number "2"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; transcript_source "ensembl"; exon_id "ENSE00003608237"; +1 transcribed_unprocessed_pseudogene exon 13225 14412 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000515242"; exon_number "3"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-201"; transcript_source "ensembl"; exon_id "ENSE00002306041"; +1 transcribed_unprocessed_pseudogene transcript 11874 14409 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; transcript_source "ensembl"; +1 transcribed_unprocessed_pseudogene exon 11874 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "1"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; transcript_source "ensembl"; exon_id "ENSE00002269724"; +1 transcribed_unprocessed_pseudogene exon 12595 12721 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "2"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; transcript_source "ensembl"; exon_id "ENSE00002270865"; +1 transcribed_unprocessed_pseudogene exon 13403 13655 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "3"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; transcript_source "ensembl"; exon_id "ENSE00002216795"; +1 transcribed_unprocessed_pseudogene exon 13661 14409 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000518655"; exon_number "4"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-202"; transcript_source "ensembl"; exon_id "ENSE00002303382"; +1 transcribed_unprocessed_pseudogene transcript 12010 13670 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; +1 transcribed_unprocessed_pseudogene exon 12010 12057 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "1"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; exon_id "ENSE00001948541"; +1 transcribed_unprocessed_pseudogene exon 12179 12227 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "2"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; exon_id "ENSE00001671638"; +1 transcribed_unprocessed_pseudogene exon 12613 12697 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "3"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; exon_id "ENSE00001758273"; +1 transcribed_unprocessed_pseudogene exon 12975 13052 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "4"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; exon_id "ENSE00001799933"; +1 transcribed_unprocessed_pseudogene exon 13221 13374 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "5"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; exon_id "ENSE00001746346"; +1 transcribed_unprocessed_pseudogene exon 13453 13670 . + . gene_id "ENSG00000223972"; transcript_id "ENST00000450305"; exon_number "6"; gene_name "DDX11L1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; exon_id "ENSE00001863096"; +1 pseudogene gene 14363 29806 . - . gene_id "ENSG00000227232"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 14363 29370 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; +1 unprocessed_pseudogene exon 29321 29370 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "1"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001718035"; +1 unprocessed_pseudogene exon 24738 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "2"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00003624050"; +1 unprocessed_pseudogene exon 18268 18379 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "3"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001642865"; +1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "4"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00003638984"; +1 unprocessed_pseudogene exon 17602 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "5"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001699689"; +1 unprocessed_pseudogene exon 17233 17364 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "6"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001656010"; +1 unprocessed_pseudogene exon 16854 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "7"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001760358"; +1 unprocessed_pseudogene exon 16607 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "8"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00003618297"; +1 unprocessed_pseudogene exon 15904 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "9"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001375216"; +1 unprocessed_pseudogene exon 15796 15901 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "10"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00001388009"; +1 unprocessed_pseudogene exon 14970 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "11"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00003497546"; +1 unprocessed_pseudogene exon 14363 14829 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000438504"; exon_number "12"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-202"; transcript_source "ensembl"; exon_id "ENSE00003511598"; +1 unprocessed_pseudogene transcript 14363 24886 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; +1 unprocessed_pseudogene exon 24734 24886 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "1"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00002254515"; +1 unprocessed_pseudogene exon 18268 18369 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "2"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00002303227"; +1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "3"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00003638984"; +1 unprocessed_pseudogene exon 17606 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "4"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00003629019"; +1 unprocessed_pseudogene exon 17498 17504 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "5"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00002285713"; +1 unprocessed_pseudogene exon 17233 17364 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "6"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00001656010"; +1 unprocessed_pseudogene exon 16854 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "7"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00001760358"; +1 unprocessed_pseudogene exon 14970 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "8"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00003497546"; +1 unprocessed_pseudogene exon 14363 14829 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000541675"; exon_number "9"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-204"; transcript_source "ensembl"; exon_id "ENSE00003511598"; +1 unprocessed_pseudogene transcript 14363 29370 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; +1 unprocessed_pseudogene exon 29321 29370 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "1"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00001718035"; +1 unprocessed_pseudogene exon 24738 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "2"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003603734"; +1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "3"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003513603"; +1 unprocessed_pseudogene exon 17606 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "4"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003565315"; +1 unprocessed_pseudogene exon 17233 17368 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "5"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003685767"; +1 unprocessed_pseudogene exon 16858 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "6"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003553898"; +1 unprocessed_pseudogene exon 16607 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "7"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003621279"; +1 unprocessed_pseudogene exon 15796 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "8"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00002030414"; +1 unprocessed_pseudogene exon 14970 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "9"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003591210"; +1 unprocessed_pseudogene exon 14363 14829 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000423562"; exon_number "10"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-201"; transcript_source "ensembl"; exon_id "ENSE00003693168"; +1 unprocessed_pseudogene transcript 14404 29570 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 29534 29570 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "1"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00001890219"; +1 unprocessed_pseudogene exon 24738 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "2"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003507205"; +1 unprocessed_pseudogene exon 18268 18366 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "3"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003477500"; +1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "4"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003565697"; +1 unprocessed_pseudogene exon 17606 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "5"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003475637"; +1 unprocessed_pseudogene exon 17233 17368 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "6"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003502542"; +1 unprocessed_pseudogene exon 16858 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "7"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003553898"; +1 unprocessed_pseudogene exon 16607 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "8"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00003621279"; +1 unprocessed_pseudogene exon 15796 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "9"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00002030414"; +1 unprocessed_pseudogene exon 15005 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "10"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00001935574"; +1 unprocessed_pseudogene exon 14404 14501 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000488147"; exon_number "11"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; exon_id "ENSE00001843071"; +1 unprocessed_pseudogene transcript 14411 29806 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; +1 unprocessed_pseudogene exon 29534 29806 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "1"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00001378845"; +1 unprocessed_pseudogene exon 24737 24891 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "2"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00002317443"; +1 unprocessed_pseudogene exon 18268 18366 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "3"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00003682243"; +1 unprocessed_pseudogene exon 17915 18061 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "4"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00003638984"; +1 unprocessed_pseudogene exon 17602 17742 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "5"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00001699689"; +1 unprocessed_pseudogene exon 17233 17364 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "6"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00001656010"; +1 unprocessed_pseudogene exon 16858 17055 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "7"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00003632482"; +1 unprocessed_pseudogene exon 16748 16765 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "8"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00002275850"; +1 unprocessed_pseudogene exon 16607 16745 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "9"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00002241734"; +1 unprocessed_pseudogene exon 15904 15947 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "10"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00001375216"; +1 unprocessed_pseudogene exon 15796 15901 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "11"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00001388009"; +1 unprocessed_pseudogene exon 15000 15038 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "12"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00002215305"; +1 unprocessed_pseudogene exon 14411 14502 . - . gene_id "ENSG00000227232"; transcript_id "ENST00000538476"; exon_number "13"; gene_name "WASH7P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "WASH7P-203"; transcript_source "ensembl"; exon_id "ENSE00002295553"; +1 lincRNA gene 29554 31109 . + . gene_id "ENSG00000243485"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 29554 31097 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-001"; transcript_source "havana"; +1 lincRNA exon 29554 30039 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; exon_number "1"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-001"; transcript_source "havana"; exon_id "ENSE00001947070"; +1 lincRNA exon 30564 30667 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; exon_number "2"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-001"; transcript_source "havana"; exon_id "ENSE00001922571"; +1 lincRNA exon 30976 31097 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000473358"; exon_number "3"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-001"; transcript_source "havana"; exon_id "ENSE00001827679"; +1 lincRNA transcript 30267 31109 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000469289"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-002"; transcript_source "havana"; +1 lincRNA exon 30267 30667 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000469289"; exon_number "1"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-002"; transcript_source "havana"; exon_id "ENSE00001841699"; +1 lincRNA exon 30976 31109 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000469289"; exon_number "2"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-002"; transcript_source "havana"; exon_id "ENSE00001890064"; +1 miRNA transcript 30366 30503 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000607096"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-201"; transcript_source "ensembl"; +1 miRNA exon 30366 30503 . + . gene_id "ENSG00000243485"; transcript_id "ENST00000607096"; exon_number "1"; gene_name "MIR1302-10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "MIR1302-10-201"; transcript_source "ensembl"; exon_id "ENSE00003695741"; +1 lincRNA gene 34554 36081 . - . gene_id "ENSG00000237613"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 34554 36081 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000417324"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "ensembl_havana"; +1 lincRNA exon 35721 36081 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000417324"; exon_number "1"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "ensembl_havana"; exon_id "ENSE00001656588"; +1 lincRNA exon 35277 35481 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000417324"; exon_number "2"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "ensembl_havana"; exon_id "ENSE00001669267"; +1 lincRNA exon 34554 35174 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000417324"; exon_number "3"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "ensembl_havana"; exon_id "ENSE00001727627"; +1 lincRNA transcript 35245 36073 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000461467"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-002"; transcript_source "havana"; +1 lincRNA exon 35721 36073 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000461467"; exon_number "1"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-002"; transcript_source "havana"; exon_id "ENSE00001618781"; +1 lincRNA exon 35245 35481 . - . gene_id "ENSG00000237613"; transcript_id "ENST00000461467"; exon_number "2"; gene_name "FAM138A"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-002"; transcript_source "havana"; exon_id "ENSE00001874421"; +1 pseudogene gene 52473 54936 . + . gene_id "ENSG00000268020"; gene_name "OR4G4P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 52473 53312 . + . gene_id "ENSG00000268020"; transcript_id "ENST00000606857"; gene_name "OR4G4P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "OR4G4P-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 52473 53312 . + . gene_id "ENSG00000268020"; transcript_id "ENST00000606857"; exon_number "1"; gene_name "OR4G4P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "OR4G4P-001"; transcript_source "havana"; exon_id "ENSE00003698237"; +1 unprocessed_pseudogene transcript 53049 54936 . + . gene_id "ENSG00000268020"; transcript_id "ENST00000594647"; gene_name "OR4G4P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "OR4G4P-201"; transcript_source "ensembl"; +1 unprocessed_pseudogene exon 53049 53067 . + . gene_id "ENSG00000268020"; transcript_id "ENST00000594647"; exon_number "1"; gene_name "OR4G4P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "OR4G4P-201"; transcript_source "ensembl"; exon_id "ENSE00003076518"; +1 unprocessed_pseudogene exon 54830 54936 . + . gene_id "ENSG00000268020"; transcript_id "ENST00000594647"; exon_number "2"; gene_name "OR4G4P"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "OR4G4P-201"; transcript_source "ensembl"; exon_id "ENSE00003074125"; +1 pseudogene gene 62948 63887 . + . gene_id "ENSG00000240361"; gene_name "OR4G11P"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 62948 63887 . + . gene_id "ENSG00000240361"; transcript_id "ENST00000492842"; gene_name "OR4G11P"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "OR4G11P-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 62948 63887 . + . gene_id "ENSG00000240361"; transcript_id "ENST00000492842"; exon_number "1"; gene_name "OR4G11P"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "OR4G11P-001"; transcript_source "havana"; exon_id "ENSE00001830178"; +1 protein_coding gene 69091 70008 . + . gene_id "ENSG00000186092"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 protein_coding transcript 69091 70008 . + . gene_id "ENSG00000186092"; transcript_id "ENST00000335137"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30547"; +1 protein_coding exon 69091 70008 . + . gene_id "ENSG00000186092"; transcript_id "ENST00000335137"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30547"; exon_id "ENSE00002319515"; +1 protein_coding CDS 69091 70005 . + 0 gene_id "ENSG00000186092"; transcript_id "ENST00000335137"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30547"; protein_id "ENSP00000334393"; +1 protein_coding start_codon 69091 69093 . + 0 gene_id "ENSG00000186092"; transcript_id "ENST00000335137"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30547"; +1 protein_coding stop_codon 70006 70008 . + 0 gene_id "ENSG00000186092"; transcript_id "ENST00000335137"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30547"; +1 lincRNA gene 89295 133566 . - . gene_id "ENSG00000238009"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 89295 120932 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000466430"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; +1 lincRNA exon 120775 120932 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000466430"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; exon_id "ENSE00001606755"; +1 lincRNA exon 112700 112804 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000466430"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; exon_id "ENSE00001957285"; +1 lincRNA exon 92091 92240 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000466430"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; exon_id "ENSE00001944529"; +1 lincRNA exon 89295 91629 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000466430"; exon_number "4"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; exon_id "ENSE00001846804"; +1 lincRNA transcript 92230 129217 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000477740"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; +1 lincRNA exon 129055 129217 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000477740"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; exon_id "ENSE00001919246"; +1 lincRNA exon 120721 120932 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000477740"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; exon_id "ENSE00001171005"; +1 lincRNA exon 112700 112804 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000477740"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; exon_id "ENSE00001957285"; +1 lincRNA exon 92230 92240 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000477740"; exon_number "4"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; exon_id "ENSE00001896976"; +1 lincRNA transcript 110953 129173 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000471248"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; +1 lincRNA exon 129055 129173 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000471248"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; exon_id "ENSE00001934975"; +1 lincRNA exon 112700 112804 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000471248"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; exon_id "ENSE00001957285"; +1 lincRNA exon 110953 111357 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000471248"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; exon_id "ENSE00001879696"; +1 lincRNA transcript 129081 133566 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000453576"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-004"; transcript_source "havana"; +1 lincRNA exon 133374 133566 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000453576"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-004"; transcript_source "havana"; exon_id "ENSE00001737600"; +1 lincRNA exon 129081 129223 . - . gene_id "ENSG00000238009"; transcript_id "ENST00000453576"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-004"; transcript_source "havana"; exon_id "ENSE00001827073"; +1 lincRNA gene 89551 91105 . - . gene_id "ENSG00000239945"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 89551 91105 . - . gene_id "ENSG00000239945"; transcript_id "ENST00000495576"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.8-001"; transcript_source "havana"; +1 lincRNA exon 90287 91105 . - . gene_id "ENSG00000239945"; transcript_id "ENST00000495576"; exon_number "1"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.8-001"; transcript_source "havana"; exon_id "ENSE00001907785"; +1 lincRNA exon 89551 90050 . - . gene_id "ENSG00000239945"; transcript_id "ENST00000495576"; exon_number "2"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.8-001"; transcript_source "havana"; exon_id "ENSE00001927725"; +1 pseudogene gene 131025 134836 . + . gene_id "ENSG00000233750"; gene_name "CICP27"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 131025 134836 . + . gene_id "ENSG00000233750"; transcript_id "ENST00000442987"; gene_name "CICP27"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP27-001"; transcript_source "havana"; +1 processed_pseudogene exon 131025 134836 . + . gene_id "ENSG00000233750"; transcript_id "ENST00000442987"; exon_number "1"; gene_name "CICP27"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP27-001"; transcript_source "havana"; exon_id "ENSE00001625118"; +1 protein_coding gene 134901 139379 . - . gene_id "ENSG00000237683"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; +1 protein_coding transcript 134901 139379 . - . gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; +1 protein_coding exon 137621 139379 . - . gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; exon_number "1"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; exon_id "ENSE00002221580"; +1 protein_coding CDS 138533 139309 . - 0 gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; exon_number "1"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; protein_id "ENSP00000473460"; +1 protein_coding stop_codon 138530 138532 . - 0 gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; exon_number "1"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; +1 protein_coding exon 134901 135802 . - . gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; exon_number "2"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; exon_id "ENSE00002314092"; +1 protein_coding UTR 139310 139379 . - . gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; +1 protein_coding UTR 137621 138529 . - . gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; +1 protein_coding UTR 134901 135802 . - . gene_id "ENSG00000237683"; transcript_id "ENST00000423372"; gene_name "AL627309.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL627309.1-201"; transcript_source "ensembl"; +1 pseudogene gene 135141 135895 . - . gene_id "ENSG00000268903"; gene_name "RP11-34P13.15"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 135141 135895 . - . gene_id "ENSG00000268903"; transcript_id "ENST00000494149"; gene_name "RP11-34P13.15"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-34P13.15-001"; transcript_source "havana"; +1 processed_pseudogene exon 135141 135895 . - . gene_id "ENSG00000268903"; transcript_id "ENST00000494149"; exon_number "1"; gene_name "RP11-34P13.15"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-34P13.15-001"; transcript_source "havana"; exon_id "ENSE00001879101"; +1 pseudogene gene 137682 137965 . - . gene_id "ENSG00000269981"; gene_name "RP11-34P13.16"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 137682 137965 . - . gene_id "ENSG00000269981"; transcript_id "ENST00000595919"; gene_name "RP11-34P13.16"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-34P13.16-001"; transcript_source "havana"; +1 processed_pseudogene exon 137682 137965 . - . gene_id "ENSG00000269981"; transcript_id "ENST00000595919"; exon_number "1"; gene_name "RP11-34P13.16"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-34P13.16-001"; transcript_source "havana"; exon_id "ENSE00001936432"; +1 antisense gene 139790 140339 . - . gene_id "ENSG00000239906"; gene_name "RP11-34P13.14"; gene_source "havana"; gene_biotype "antisense"; +1 antisense transcript 139790 140339 . - . gene_id "ENSG00000239906"; transcript_id "ENST00000493797"; gene_name "RP11-34P13.14"; gene_source "havana"; gene_biotype "antisense"; transcript_name "RP11-34P13.14-001"; transcript_source "havana"; +1 antisense exon 140075 140339 . - . gene_id "ENSG00000239906"; transcript_id "ENST00000493797"; exon_number "1"; gene_name "RP11-34P13.14"; gene_source "havana"; gene_biotype "antisense"; transcript_name "RP11-34P13.14-001"; transcript_source "havana"; exon_id "ENSE00001913281"; +1 antisense exon 139790 139847 . - . gene_id "ENSG00000239906"; transcript_id "ENST00000493797"; exon_number "2"; gene_name "RP11-34P13.14"; gene_source "havana"; gene_biotype "antisense"; transcript_name "RP11-34P13.14-001"; transcript_source "havana"; exon_id "ENSE00001922992"; +1 processed_transcript gene 141474 173862 . - . gene_id "ENSG00000241860"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; +1 antisense transcript 141474 149707 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000484859"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-004"; transcript_source "havana"; +1 antisense exon 146386 149707 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000484859"; exon_number "1"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-004"; transcript_source "havana"; exon_id "ENSE00001860404"; +1 antisense exon 141474 143011 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000484859"; exon_number "2"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-004"; transcript_source "havana"; exon_id "ENSE00001911218"; +1 antisense transcript 142808 146831 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000490997"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-003"; transcript_source "havana"; +1 antisense exon 146642 146831 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000490997"; exon_number "1"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-003"; transcript_source "havana"; exon_id "ENSE00001868647"; +1 antisense exon 146386 146509 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000490997"; exon_number "2"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-003"; transcript_source "havana"; exon_id "ENSE00001853409"; +1 antisense exon 142808 143011 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000490997"; exon_number "3"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-003"; transcript_source "havana"; exon_id "ENSE00001838397"; +1 lincRNA transcript 146386 173862 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; +1 lincRNA exon 173753 173862 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "1"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001947154"; +1 lincRNA exon 172557 172688 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "2"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001890990"; +1 lincRNA exon 169049 169264 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "3"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001922566"; +1 lincRNA exon 168100 168165 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "4"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001947087"; +1 lincRNA exon 165884 165942 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "5"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001949945"; +1 lincRNA exon 164263 164791 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "6"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001862111"; +1 lincRNA exon 155767 155831 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "7"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001799309"; +1 lincRNA exon 146386 146509 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000466557"; exon_number "8"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-001"; transcript_source "havana"; exon_id "ENSE00001853409"; +1 lincRNA transcript 165889 168767 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000491962"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-002"; transcript_source "havana"; +1 lincRNA exon 168610 168767 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000491962"; exon_number "1"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-002"; transcript_source "havana"; exon_id "ENSE00001939117"; +1 lincRNA exon 168100 168165 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000491962"; exon_number "2"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-002"; transcript_source "havana"; exon_id "ENSE00001947087"; +1 lincRNA exon 165889 165942 . - . gene_id "ENSG00000241860"; transcript_id "ENST00000491962"; exon_number "3"; gene_name "RP11-34P13.13"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-34P13.13-002"; transcript_source "havana"; exon_id "ENSE00001898156"; +1 snRNA gene 157784 157887 . - . gene_id "ENSG00000222623"; gene_name "RNU6-1100P"; gene_source "ensembl"; gene_biotype "snRNA"; +1 snRNA transcript 157784 157887 . - . gene_id "ENSG00000222623"; transcript_id "ENST00000410691"; gene_name "RNU6-1100P"; gene_source "ensembl"; gene_biotype "snRNA"; transcript_name "RNU6-1100P-201"; transcript_source "ensembl"; +1 snRNA exon 157784 157887 . - . gene_id "ENSG00000222623"; transcript_id "ENST00000410691"; exon_number "1"; gene_name "RNU6-1100P"; gene_source "ensembl"; gene_biotype "snRNA"; transcript_name "RNU6-1100P-201"; transcript_source "ensembl"; exon_id "ENSE00001807945"; +1 lincRNA gene 160446 161525 . + . gene_id "ENSG00000241599"; gene_name "RP11-34P13.9"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 160446 161525 . + . gene_id "ENSG00000241599"; transcript_id "ENST00000496488"; gene_name "RP11-34P13.9"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.9-001"; transcript_source "havana"; +1 lincRNA exon 160446 160690 . + . gene_id "ENSG00000241599"; transcript_id "ENST00000496488"; exon_number "1"; gene_name "RP11-34P13.9"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.9-001"; transcript_source "havana"; exon_id "ENSE00001882727"; +1 lincRNA exon 161314 161525 . + . gene_id "ENSG00000241599"; transcript_id "ENST00000496488"; exon_number "2"; gene_name "RP11-34P13.9"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.9-001"; transcript_source "havana"; exon_id "ENSE00001895361"; +1 lincRNA gene 227615 267253 . - . gene_id "ENSG00000228463"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 227615 234484 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000442116"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-003"; transcript_source "havana"; +1 lincRNA exon 234355 234484 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000442116"; exon_number "1"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-003"; transcript_source "havana"; exon_id "ENSE00001149252"; +1 lincRNA exon 227615 228776 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000442116"; exon_number "2"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-003"; transcript_source "havana"; exon_id "ENSE00001677641"; +1 lincRNA transcript 227895 238558 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000448958"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-002"; transcript_source "havana"; +1 lincRNA exon 238418 238558 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000448958"; exon_number "1"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-002"; transcript_source "havana"; exon_id "ENSE00001759371"; +1 lincRNA exon 237054 237955 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000448958"; exon_number "2"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-002"; transcript_source "havana"; exon_id "ENSE00001769002"; +1 lincRNA exon 227895 228776 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000448958"; exon_number "3"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-002"; transcript_source "havana"; exon_id "ENSE00001697698"; +1 lincRNA transcript 236112 267253 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000424587"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-001"; transcript_source "havana"; +1 lincRNA exon 267096 267253 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000424587"; exon_number "1"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-001"; transcript_source "havana"; exon_id "ENSE00001697423"; +1 lincRNA exon 259017 259121 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000424587"; exon_number "2"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-001"; transcript_source "havana"; exon_id "ENSE00001694491"; +1 lincRNA exon 238418 238567 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000424587"; exon_number "3"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-001"; transcript_source "havana"; exon_id "ENSE00001688505"; +1 lincRNA exon 236112 237955 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000424587"; exon_number "4"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-001"; transcript_source "havana"; exon_id "ENSE00001785078"; +1 lincRNA transcript 257268 259121 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000335577"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-004"; transcript_source "havana"; +1 lincRNA exon 259017 259121 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000335577"; exon_number "1"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-004"; transcript_source "havana"; exon_id "ENSE00001694491"; +1 lincRNA exon 257268 257672 . - . gene_id "ENSG00000228463"; transcript_id "ENST00000335577"; exon_number "2"; gene_name "AP006222.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "AP006222.2-004"; transcript_source "havana"; exon_id "ENSE00001618264"; +1 pseudogene gene 228292 228775 . - . gene_id "ENSG00000241670"; gene_name "AP006222.1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 228292 228654 . - . gene_id "ENSG00000241670"; transcript_id "ENST00000424429"; gene_name "AP006222.1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "AP006222.1-201"; transcript_source "ensembl"; +1 processed_pseudogene exon 228292 228654 . - . gene_id "ENSG00000241670"; transcript_id "ENST00000424429"; exon_number "1"; gene_name "AP006222.1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "AP006222.1-201"; transcript_source "ensembl"; exon_id "ENSE00001643312"; +1 processed_pseudogene transcript 228319 228775 . - . gene_id "ENSG00000241670"; transcript_id "ENST00000450734"; gene_name "AP006222.1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "AP006222.1-001"; transcript_source "havana"; +1 processed_pseudogene exon 228319 228775 . - . gene_id "ENSG00000241670"; transcript_id "ENST00000450734"; exon_number "1"; gene_name "AP006222.1"; gene_source "ensembl_havana"; gene_biotype "pseudogene"; transcript_name "AP006222.1-001"; transcript_source "havana"; exon_id "ENSE00001787230"; +1 lincRNA gene 317720 453948 . + . gene_id "ENSG00000237094"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 317720 324873 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440038"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-003"; transcript_source "havana"; +1 lincRNA exon 317720 317781 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440038"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-003"; transcript_source "havana"; exon_id "ENSE00003186556"; +1 lincRNA exon 322038 322228 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440038"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-003"; transcript_source "havana"; exon_id "ENSE00003075294"; +1 lincRNA exon 324288 324345 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440038"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-003"; transcript_source "havana"; exon_id "ENSE00003328882"; +1 lincRNA exon 324439 324873 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440038"; exon_number "4"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-003"; transcript_source "havana"; exon_id "ENSE00003003869"; +1 lincRNA transcript 317730 320353 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000608420"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-014"; transcript_source "havana"; +1 lincRNA exon 317730 317781 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000608420"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-014"; transcript_source "havana"; exon_id "ENSE00003709813"; +1 lincRNA exon 319968 320353 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000608420"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-014"; transcript_source "havana"; exon_id "ENSE00003708499"; +1 lincRNA transcript 320162 321056 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000432964"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-001"; transcript_source "havana"; +1 lincRNA exon 320162 320653 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000432964"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-001"; transcript_source "havana"; exon_id "ENSE00001736043"; +1 lincRNA exon 320881 320938 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000432964"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-001"; transcript_source "havana"; exon_id "ENSE00001601447"; +1 lincRNA exon 321032 321056 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000432964"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-001"; transcript_source "havana"; exon_id "ENSE00001803078"; +1 lincRNA transcript 320162 324461 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000423728"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-002"; transcript_source "havana"; +1 lincRNA exon 320162 320653 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000423728"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-002"; transcript_source "havana"; exon_id "ENSE00001736043"; +1 lincRNA exon 324288 324345 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000423728"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-002"; transcript_source "havana"; exon_id "ENSE00003328882"; +1 lincRNA exon 324439 324461 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000423728"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-002"; transcript_source "havana"; exon_id "ENSE00001798174"; +1 lincRNA transcript 320335 322097 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601486"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-006"; transcript_source "havana"; +1 lincRNA exon 320335 320653 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601486"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-006"; transcript_source "havana"; exon_id "ENSE00003097839"; +1 lincRNA exon 320881 320938 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601486"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-006"; transcript_source "havana"; exon_id "ENSE00001601447"; +1 lincRNA exon 321032 321290 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601486"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-006"; transcript_source "havana"; exon_id "ENSE00003063936"; +1 lincRNA exon 322038 322097 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601486"; exon_number "4"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-006"; transcript_source "havana"; exon_id "ENSE00003045569"; +1 lincRNA transcript 320881 322203 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000599771"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-005"; transcript_source "havana"; +1 lincRNA exon 320881 320938 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000599771"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-005"; transcript_source "havana"; exon_id "ENSE00001601447"; +1 lincRNA exon 321032 321264 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000599771"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-005"; transcript_source "havana"; exon_id "ENSE00001760542"; +1 lincRNA exon 322038 322203 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000599771"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-005"; transcript_source "havana"; exon_id "ENSE00003062243"; +1 lincRNA transcript 322078 342806 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455464"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-009"; transcript_source "havana"; +1 lincRNA exon 322078 322228 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455464"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-009"; transcript_source "havana"; exon_id "ENSE00003016872"; +1 lincRNA exon 334129 334297 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455464"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-009"; transcript_source "havana"; exon_id "ENSE00001794483"; +1 lincRNA exon 342392 342806 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455464"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-009"; transcript_source "havana"; exon_id "ENSE00001707425"; +1 lincRNA transcript 322672 324955 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000419160"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-004"; transcript_source "havana"; +1 lincRNA exon 322672 323073 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000419160"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-004"; transcript_source "havana"; exon_id "ENSE00001650218"; +1 lincRNA exon 324751 324955 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000419160"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-004"; transcript_source "havana"; exon_id "ENSE00001760607"; +1 lincRNA transcript 323861 334505 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601814"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-007"; transcript_source "havana"; +1 lincRNA exon 323861 324060 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601814"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-007"; transcript_source "havana"; exon_id "ENSE00002997765"; +1 lincRNA exon 324288 324345 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601814"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-007"; transcript_source "havana"; exon_id "ENSE00003328882"; +1 lincRNA exon 334129 334505 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000601814"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-007"; transcript_source "havana"; exon_id "ENSE00001690296"; +1 lincRNA transcript 324756 328453 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000425496"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-201"; transcript_source "ensembl"; +1 lincRNA exon 324756 326514 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000425496"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-201"; transcript_source "ensembl"; exon_id "ENSE00002233090"; +1 lincRNA exon 327552 328453 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000425496"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-201"; transcript_source "ensembl"; exon_id "ENSE00002297756"; +1 lincRNA transcript 329784 334271 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000431812"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-008"; transcript_source "havana"; +1 lincRNA exon 329784 329976 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000431812"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-008"; transcript_source "havana"; exon_id "ENSE00001628206"; +1 lincRNA exon 334129 334271 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000431812"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-008"; transcript_source "havana"; exon_id "ENSE00001758832"; +1 lincRNA transcript 334129 446155 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455207"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-010"; transcript_source "havana"; +1 lincRNA exon 334129 334297 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455207"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-010"; transcript_source "havana"; exon_id "ENSE00001794483"; +1 lincRNA exon 439467 439568 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455207"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-010"; transcript_source "havana"; exon_id "ENSE00001628100"; +1 lincRNA exon 446014 446155 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000455207"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-010"; transcript_source "havana"; exon_id "ENSE00001770724"; +1 lincRNA transcript 439365 453722 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440163"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-011"; transcript_source "havana"; +1 lincRNA exon 439365 439568 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440163"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-011"; transcript_source "havana"; exon_id "ENSE00001687828"; +1 lincRNA exon 446014 446193 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440163"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-011"; transcript_source "havana"; exon_id "ENSE00001622961"; +1 lincRNA exon 453645 453722 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000440163"; exon_number "3"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-011"; transcript_source "havana"; exon_id "ENSE00001651822"; +1 lincRNA transcript 450887 453942 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000453935"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-013"; transcript_source "havana"; +1 lincRNA exon 450887 451086 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000453935"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-013"; transcript_source "havana"; exon_id "ENSE00001651491"; +1 lincRNA exon 453645 453942 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000453935"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-013"; transcript_source "havana"; exon_id "ENSE00001798578"; +1 lincRNA transcript 453217 453948 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000431321"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-012"; transcript_source "havana"; +1 lincRNA exon 453217 453318 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000431321"; exon_number "1"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-012"; transcript_source "havana"; exon_id "ENSE00001720138"; +1 lincRNA exon 453645 453948 . + . gene_id "ENSG00000237094"; transcript_id "ENST00000431321"; exon_number "2"; gene_name "RP4-669L17.10"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.10-012"; transcript_source "havana"; exon_id "ENSE00001656291"; +1 pseudogene gene 326096 328112 . + . gene_id "ENSG00000250575"; gene_name "RP4-669L17.8"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 326096 328112 . + . gene_id "ENSG00000250575"; transcript_id "ENST00000514436"; gene_name "RP4-669L17.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.8-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 326096 326569 . + . gene_id "ENSG00000250575"; transcript_id "ENST00000514436"; exon_number "1"; gene_name "RP4-669L17.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.8-001"; transcript_source "havana"; exon_id "ENSE00002058739"; +1 unprocessed_pseudogene exon 327348 328112 . + . gene_id "ENSG00000250575"; transcript_id "ENST00000514436"; exon_number "2"; gene_name "RP4-669L17.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.8-001"; transcript_source "havana"; exon_id "ENSE00002064640"; +1 pseudogene gene 329431 332236 . - . gene_id "ENSG00000233653"; gene_name "CICP7"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 329431 332236 . - . gene_id "ENSG00000233653"; transcript_id "ENST00000432723"; gene_name "CICP7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP7-001"; transcript_source "havana"; +1 processed_pseudogene exon 329950 332236 . - . gene_id "ENSG00000233653"; transcript_id "ENST00000432723"; exon_number "1"; gene_name "CICP7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP7-001"; transcript_source "havana"; exon_id "ENSE00001705369"; +1 processed_pseudogene exon 329431 329620 . - . gene_id "ENSG00000233653"; transcript_id "ENST00000432723"; exon_number "2"; gene_name "CICP7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP7-001"; transcript_source "havana"; exon_id "ENSE00003569252"; +1 pseudogene gene 334126 334305 . + . gene_id "ENSG00000224813"; gene_name "RP4-669L17.4"; gene_source "havana"; gene_biotype "pseudogene"; +1 transcribed_unprocessed_pseudogene transcript 334126 334305 . + . gene_id "ENSG00000224813"; transcript_id "ENST00000445840"; gene_name "RP4-669L17.4"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.4-001"; transcript_source "havana"; +1 transcribed_unprocessed_pseudogene exon 334126 334305 . + . gene_id "ENSG00000224813"; transcript_id "ENST00000445840"; exon_number "1"; gene_name "RP4-669L17.4"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.4-001"; transcript_source "havana"; exon_id "ENSE00001665892"; +1 protein_coding gene 367640 368634 . + . gene_id "ENSG00000235249"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 protein_coding transcript 367640 368634 . + . gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; +1 protein_coding exon 367640 368634 . + . gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; exon_number "1"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; exon_id "ENSE00002316283"; +1 protein_coding CDS 367659 368594 . + 0 gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; exon_number "1"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; protein_id "ENSP00000409316"; +1 protein_coding start_codon 367659 367661 . + 0 gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; exon_number "1"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; +1 protein_coding stop_codon 368595 368597 . + 0 gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; exon_number "1"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; +1 protein_coding UTR 367640 367658 . + . gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; +1 protein_coding UTR 368598 368634 . + . gene_id "ENSG00000235249"; transcript_id "ENST00000426406"; gene_name "OR4F29"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F29-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41220"; +1 pseudogene gene 379105 379467 . - . gene_id "ENSG00000269732"; gene_name "WBP1LP7"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 379105 379467 . - . gene_id "ENSG00000269732"; transcript_id "ENST00000437905"; gene_name "WBP1LP7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "WBP1LP7-001"; transcript_source "havana"; +1 processed_pseudogene exon 379105 379467 . - . gene_id "ENSG00000269732"; transcript_id "ENST00000437905"; exon_number "1"; gene_name "WBP1LP7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "WBP1LP7-001"; transcript_source "havana"; exon_id "ENSE00003220883"; +1 pseudogene gene 450820 450910 . - . gene_id "ENSG00000256186"; gene_name "AL732372.1"; gene_source "ensembl"; gene_biotype "pseudogene"; +1 pseudogene transcript 450820 450910 . - . gene_id "ENSG00000256186"; transcript_id "ENST00000540477"; gene_name "AL732372.1"; gene_source "ensembl"; gene_biotype "pseudogene"; transcript_name "AL732372.1-201"; transcript_source "ensembl"; +1 pseudogene exon 450854 450910 . - . gene_id "ENSG00000256186"; transcript_id "ENST00000540477"; exon_number "1"; gene_name "AL732372.1"; gene_source "ensembl"; gene_biotype "pseudogene"; transcript_name "AL732372.1-201"; transcript_source "ensembl"; exon_id "ENSE00002305101"; +1 pseudogene exon 450820 450852 . - . gene_id "ENSG00000256186"; transcript_id "ENST00000540477"; exon_number "2"; gene_name "AL732372.1"; gene_source "ensembl"; gene_biotype "pseudogene"; transcript_name "AL732372.1-201"; transcript_source "ensembl"; exon_id "ENSE00002202695"; +1 lincRNA gene 453633 460480 . - . gene_id "ENSG00000236601"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 453633 460480 . - . gene_id "ENSG00000236601"; transcript_id "ENST00000450983"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.2-002"; transcript_source "havana"; +1 lincRNA exon 460408 460480 . - . gene_id "ENSG00000236601"; transcript_id "ENST00000450983"; exon_number "1"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.2-002"; transcript_source "havana"; exon_id "ENSE00001634442"; +1 lincRNA exon 453633 454166 . - . gene_id "ENSG00000236601"; transcript_id "ENST00000450983"; exon_number "2"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.2-002"; transcript_source "havana"; exon_id "ENSE00001787178"; +1 lincRNA transcript 453827 460465 . - . gene_id "ENSG00000236601"; transcript_id "ENST00000412666"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.2-001"; transcript_source "havana"; +1 lincRNA exon 460380 460465 . - . gene_id "ENSG00000236601"; transcript_id "ENST00000412666"; exon_number "1"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.2-001"; transcript_source "havana"; exon_id "ENSE00001700697"; +1 lincRNA exon 453827 454166 . - . gene_id "ENSG00000236601"; transcript_id "ENST00000412666"; exon_number "2"; gene_name "RP4-669L17.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP4-669L17.2-001"; transcript_source "havana"; exon_id "ENSE00001745103"; +1 lincRNA gene 459656 461954 . + . gene_id "ENSG00000236743"; gene_name "RP5-857K21.15"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 459656 461954 . + . gene_id "ENSG00000236743"; transcript_id "ENST00000441866"; gene_name "RP5-857K21.15"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.15-001"; transcript_source "havana"; +1 lincRNA exon 459656 459992 . + . gene_id "ENSG00000236743"; transcript_id "ENST00000441866"; exon_number "1"; gene_name "RP5-857K21.15"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.15-001"; transcript_source "havana"; exon_id "ENSE00001670287"; +1 lincRNA exon 461154 461288 . + . gene_id "ENSG00000236743"; transcript_id "ENST00000441866"; exon_number "2"; gene_name "RP5-857K21.15"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.15-001"; transcript_source "havana"; exon_id "ENSE00001729229"; +1 lincRNA exon 461751 461954 . + . gene_id "ENSG00000236743"; transcript_id "ENST00000441866"; exon_number "3"; gene_name "RP5-857K21.15"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.15-001"; transcript_source "havana"; exon_id "ENSE00001772679"; +1 pseudogene gene 470971 471355 . + . gene_id "ENSG00000236679"; gene_name "RP4-669L17.1"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 470971 471355 . + . gene_id "ENSG00000236679"; transcript_id "ENST00000458203"; gene_name "RP4-669L17.1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.1-004"; transcript_source "havana"; +1 processed_pseudogene exon 470971 471355 . + . gene_id "ENSG00000236679"; transcript_id "ENST00000458203"; exon_number "1"; gene_name "RP4-669L17.1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP4-669L17.1-004"; transcript_source "havana"; exon_id "ENSE00001707201"; +1 lincRNA gene 521369 523833 . - . gene_id "ENSG00000231709"; gene_name "RP5-857K21.1"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 521369 523833 . - . gene_id "ENSG00000231709"; transcript_id "ENST00000417636"; gene_name "RP5-857K21.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.1-001"; transcript_source "havana"; +1 lincRNA exon 523497 523833 . - . gene_id "ENSG00000231709"; transcript_id "ENST00000417636"; exon_number "1"; gene_name "RP5-857K21.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.1-001"; transcript_source "havana"; exon_id "ENSE00001738702"; +1 lincRNA exon 522201 522335 . - . gene_id "ENSG00000231709"; transcript_id "ENST00000417636"; exon_number "2"; gene_name "RP5-857K21.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.1-001"; transcript_source "havana"; exon_id "ENSE00001647781"; +1 lincRNA exon 521369 521738 . - . gene_id "ENSG00000231709"; transcript_id "ENST00000417636"; exon_number "3"; gene_name "RP5-857K21.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.1-001"; transcript_source "havana"; exon_id "ENSE00001680902"; +1 lincRNA gene 523009 530148 . + . gene_id "ENSG00000235146"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 523009 530148 . + . gene_id "ENSG00000235146"; transcript_id "ENST00000423796"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.2-002"; transcript_source "havana"; +1 lincRNA exon 523009 523081 . + . gene_id "ENSG00000235146"; transcript_id "ENST00000423796"; exon_number "1"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.2-002"; transcript_source "havana"; exon_id "ENSE00001621971"; +1 lincRNA exon 529615 530148 . + . gene_id "ENSG00000235146"; transcript_id "ENST00000423796"; exon_number "2"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.2-002"; transcript_source "havana"; exon_id "ENSE00001665260"; +1 lincRNA transcript 523048 529954 . + . gene_id "ENSG00000235146"; transcript_id "ENST00000450696"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.2-001"; transcript_source "havana"; +1 lincRNA exon 523048 523109 . + . gene_id "ENSG00000235146"; transcript_id "ENST00000450696"; exon_number "1"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.2-001"; transcript_source "havana"; exon_id "ENSE00001734474"; +1 lincRNA exon 529615 529954 . + . gene_id "ENSG00000235146"; transcript_id "ENST00000450696"; exon_number "2"; gene_name "RP5-857K21.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.2-001"; transcript_source "havana"; exon_id "ENSE00001607178"; +1 lincRNA gene 529833 532878 . - . gene_id "ENSG00000239664"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 529833 530597 . - . gene_id "ENSG00000239664"; transcript_id "ENST00000440196"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.3-001"; transcript_source "havana"; +1 lincRNA exon 530463 530597 . - . gene_id "ENSG00000239664"; transcript_id "ENST00000440196"; exon_number "1"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.3-001"; transcript_source "havana"; exon_id "ENSE00001610890"; +1 lincRNA exon 529833 530136 . - . gene_id "ENSG00000239664"; transcript_id "ENST00000440196"; exon_number "2"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.3-001"; transcript_source "havana"; exon_id "ENSE00001752275"; +1 lincRNA transcript 529839 532878 . - . gene_id "ENSG00000239664"; transcript_id "ENST00000357876"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.3-002"; transcript_source "havana"; +1 lincRNA exon 532679 532878 . - . gene_id "ENSG00000239664"; transcript_id "ENST00000357876"; exon_number "1"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.3-002"; transcript_source "havana"; exon_id "ENSE00001651821"; +1 lincRNA exon 529839 530136 . - . gene_id "ENSG00000239664"; transcript_id "ENST00000357876"; exon_number "2"; gene_name "RP5-857K21.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.3-002"; transcript_source "havana"; exon_id "ENSE00001652759"; +1 lincRNA gene 536816 659930 . - . gene_id "ENSG00000230021"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 536816 655580 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000440200"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-001"; transcript_source "havana"; +1 lincRNA exon 655412 655580 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000440200"; exon_number "1"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-001"; transcript_source "havana"; exon_id "ENSE00001745637"; +1 lincRNA exon 543335 543436 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000440200"; exon_number "2"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-001"; transcript_source "havana"; exon_id "ENSE00001718533"; +1 lincRNA exon 536816 536957 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000440200"; exon_number "3"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-001"; transcript_source "havana"; exon_id "ENSE00001773655"; +1 lincRNA transcript 637316 655530 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000441245"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-002"; transcript_source "havana"; +1 lincRNA exon 655412 655530 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000441245"; exon_number "1"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-002"; transcript_source "havana"; exon_id "ENSE00001663889"; +1 lincRNA exon 639065 639169 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000441245"; exon_number "2"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-002"; transcript_source "havana"; exon_id "ENSE00001671684"; +1 lincRNA exon 637316 637720 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000441245"; exon_number "3"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-002"; transcript_source "havana"; exon_id "ENSE00001753339"; +1 lincRNA transcript 639065 655574 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000419394"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-006"; transcript_source "havana"; +1 lincRNA exon 655412 655574 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000419394"; exon_number "1"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-006"; transcript_source "havana"; exon_id "ENSE00001595248"; +1 lincRNA exon 647091 647302 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000419394"; exon_number "2"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-006"; transcript_source "havana"; exon_id "ENSE00001696741"; +1 lincRNA exon 639065 639169 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000419394"; exon_number "3"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-006"; transcript_source "havana"; exon_id "ENSE00001671684"; +1 lincRNA transcript 646722 655580 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000414688"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-004"; transcript_source "havana"; +1 lincRNA exon 655412 655580 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000414688"; exon_number "1"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-004"; transcript_source "havana"; exon_id "ENSE00001745637"; +1 lincRNA exon 646722 647302 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000414688"; exon_number "2"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-004"; transcript_source "havana"; exon_id "ENSE00001788533"; +1 lincRNA transcript 655438 659930 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000447954"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-005"; transcript_source "havana"; +1 lincRNA exon 659738 659930 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000447954"; exon_number "1"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-005"; transcript_source "havana"; exon_id "ENSE00001688006"; +1 lincRNA exon 655438 655580 . - . gene_id "ENSG00000230021"; transcript_id "ENST00000447954"; exon_number "2"; gene_name "RP5-857K21.4"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.4-005"; transcript_source "havana"; exon_id "ENSE00001675630"; +1 lincRNA gene 562757 564390 . - . gene_id "ENSG00000223659"; gene_name "RP5-857K21.5"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 562757 564390 . - . gene_id "ENSG00000223659"; transcript_id "ENST00000452176"; gene_name "RP5-857K21.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.5-001"; transcript_source "havana"; +1 lincRNA exon 564299 564390 . - . gene_id "ENSG00000223659"; transcript_id "ENST00000452176"; exon_number "1"; gene_name "RP5-857K21.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.5-001"; transcript_source "havana"; exon_id "ENSE00001722809"; +1 lincRNA exon 563341 563603 . - . gene_id "ENSG00000223659"; transcript_id "ENST00000452176"; exon_number "2"; gene_name "RP5-857K21.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.5-001"; transcript_source "havana"; exon_id "ENSE00001760488"; +1 lincRNA exon 562757 563203 . - . gene_id "ENSG00000223659"; transcript_id "ENST00000452176"; exon_number "3"; gene_name "RP5-857K21.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP5-857K21.5-001"; transcript_source "havana"; exon_id "ENSE00001675353"; +1 pseudogene gene 564442 564813 . + . gene_id "ENSG00000225972"; gene_name "MTND1P23"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 564442 564813 . + . gene_id "ENSG00000225972"; transcript_id "ENST00000416931"; gene_name "MTND1P23"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTND1P23-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 564442 564813 . + . gene_id "ENSG00000225972"; transcript_id "ENST00000416931"; exon_number "1"; gene_name "MTND1P23"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTND1P23-001"; transcript_source "havana"; exon_id "ENSE00001797039"; +1 pseudogene gene 565020 566063 . + . gene_id "ENSG00000225630"; gene_name "MTND2P28"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 565020 566063 . + . gene_id "ENSG00000225630"; transcript_id "ENST00000457540"; gene_name "MTND2P28"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTND2P28-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 565020 566063 . + . gene_id "ENSG00000225630"; transcript_id "ENST00000457540"; exon_number "1"; gene_name "MTND2P28"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTND2P28-001"; transcript_source "havana"; exon_id "ENSE00001780589"; +1 pseudogene gene 566454 567996 . + . gene_id "ENSG00000237973"; gene_name "hsa-mir-6723"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 566454 567996 . + . gene_id "ENSG00000237973"; transcript_id "ENST00000414273"; gene_name "hsa-mir-6723"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "hsa-mir-6723.1-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 566454 567996 . + . gene_id "ENSG00000237973"; transcript_id "ENST00000414273"; exon_number "1"; gene_name "hsa-mir-6723"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "hsa-mir-6723.1-001"; transcript_source "havana"; exon_id "ENSE00001795950"; +1 pseudogene gene 568137 568818 . + . gene_id "ENSG00000229344"; gene_name "RP5-857K21.7"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 568137 568818 . + . gene_id "ENSG00000229344"; transcript_id "ENST00000427426"; gene_name "RP5-857K21.7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP5-857K21.7-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 568137 568818 . + . gene_id "ENSG00000229344"; transcript_id "ENST00000427426"; exon_number "1"; gene_name "RP5-857K21.7"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP5-857K21.7-001"; transcript_source "havana"; exon_id "ENSE00001607075"; +1 pseudogene gene 568915 569121 . + . gene_id "ENSG00000240409"; gene_name "MTATP8P1"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 568915 569121 . + . gene_id "ENSG00000240409"; transcript_id "ENST00000467115"; gene_name "MTATP8P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTATP8P1-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 568915 569121 . + . gene_id "ENSG00000240409"; transcript_id "ENST00000467115"; exon_number "1"; gene_name "MTATP8P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTATP8P1-001"; transcript_source "havana"; exon_id "ENSE00001887928"; +1 pseudogene gene 569076 569756 . + . gene_id "ENSG00000248527"; gene_name "MTATP6P1"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 569076 569756 . + . gene_id "ENSG00000248527"; transcript_id "ENST00000514057"; gene_name "MTATP6P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTATP6P1-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 569076 569756 . + . gene_id "ENSG00000248527"; transcript_id "ENST00000514057"; exon_number "1"; gene_name "MTATP6P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "MTATP6P1-001"; transcript_source "havana"; exon_id "ENSE00002056229"; +1 pseudogene gene 569756 570302 . + . gene_id "ENSG00000198744"; gene_name "RP5-857K21.11"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 569756 570302 . + . gene_id "ENSG00000198744"; transcript_id "ENST00000416718"; gene_name "RP5-857K21.11"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP5-857K21.11-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 569756 570302 . + . gene_id "ENSG00000198744"; transcript_id "ENST00000416718"; exon_number "1"; gene_name "RP5-857K21.11"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP5-857K21.11-001"; transcript_source "havana"; exon_id "ENSE00001720008"; +1 pseudogene gene 610222 610645 . + . gene_id "ENSG00000268663"; gene_name "WBP1LP6"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 610222 610645 . + . gene_id "ENSG00000268663"; transcript_id "ENST00000438434"; gene_name "WBP1LP6"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "WBP1LP6-001"; transcript_source "havana"; +1 processed_pseudogene exon 610222 610645 . + . gene_id "ENSG00000268663"; transcript_id "ENST00000438434"; exon_number "1"; gene_name "WBP1LP6"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "WBP1LP6-001"; transcript_source "havana"; exon_id "ENSE00003226141"; +1 protein_coding gene 621059 622053 . - . gene_id "ENSG00000185097"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 protein_coding transcript 621059 622053 . - . gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; +1 protein_coding exon 621059 622053 . - . gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; exon_number "1"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; exon_id "ENSE00002324228"; +1 protein_coding CDS 621099 622034 . - 0 gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; exon_number "1"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; protein_id "ENSP00000329982"; +1 protein_coding start_codon 622032 622034 . - 0 gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; exon_number "1"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; +1 protein_coding stop_codon 621096 621098 . - 0 gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; exon_number "1"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; +1 protein_coding UTR 622035 622053 . - . gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; +1 protein_coding UTR 621059 621095 . - . gene_id "ENSG00000185097"; transcript_id "ENST00000332831"; gene_name "OR4F16"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F16-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41221"; +1 pseudogene gene 657472 660283 . + . gene_id "ENSG00000229376"; gene_name "CICP3"; gene_source "havana"; gene_biotype "pseudogene"; +1 processed_pseudogene transcript 657472 660283 . + . gene_id "ENSG00000229376"; transcript_id "ENST00000440782"; gene_name "CICP3"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP3-001"; transcript_source "havana"; +1 processed_pseudogene exon 657472 659740 . + . gene_id "ENSG00000229376"; transcript_id "ENST00000440782"; exon_number "1"; gene_name "CICP3"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP3-001"; transcript_source "havana"; exon_id "ENSE00001731162"; +1 processed_pseudogene exon 660098 660283 . + . gene_id "ENSG00000229376"; transcript_id "ENST00000440782"; exon_number "2"; gene_name "CICP3"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "CICP3-001"; transcript_source "havana"; exon_id "ENSE00003593944"; +1 pseudogene gene 661611 663527 . - . gene_id "ENSG00000224956"; gene_name "RP11-206L10.1"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 661611 663527 . - . gene_id "ENSG00000224956"; transcript_id "ENST00000506640"; gene_name "RP11-206L10.1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.1-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 663054 663527 . - . gene_id "ENSG00000224956"; transcript_id "ENST00000506640"; exon_number "1"; gene_name "RP11-206L10.1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.1-001"; transcript_source "havana"; exon_id "ENSE00002082381"; +1 unprocessed_pseudogene exon 661611 662372 . - . gene_id "ENSG00000224956"; transcript_id "ENST00000506640"; exon_number "2"; gene_name "RP11-206L10.1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.1-001"; transcript_source "havana"; exon_id "ENSE00002076418"; +1 lincRNA gene 677193 685396 . - . gene_id "ENSG00000235373"; gene_name "RP11-206L10.3"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 677193 685396 . - . gene_id "ENSG00000235373"; transcript_id "ENST00000416385"; gene_name "RP11-206L10.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.3-001"; transcript_source "havana"; +1 lincRNA exon 682075 685396 . - . gene_id "ENSG00000235373"; transcript_id "ENST00000416385"; exon_number "1"; gene_name "RP11-206L10.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.3-001"; transcript_source "havana"; exon_id "ENSE00001605176"; +1 lincRNA exon 677193 678730 . - . gene_id "ENSG00000235373"; transcript_id "ENST00000416385"; exon_number "2"; gene_name "RP11-206L10.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.3-001"; transcript_source "havana"; exon_id "ENSE00001650007"; +1 snRNA gene 693613 693716 . - . gene_id "ENSG00000223181"; gene_name "RNU6-1199P"; gene_source "ensembl"; gene_biotype "snRNA"; +1 snRNA transcript 693613 693716 . - . gene_id "ENSG00000223181"; transcript_id "ENST00000411249"; gene_name "RNU6-1199P"; gene_source "ensembl"; gene_biotype "snRNA"; transcript_name "RNU6-1199P-201"; transcript_source "ensembl"; +1 snRNA exon 693613 693716 . - . gene_id "ENSG00000223181"; transcript_id "ENST00000411249"; exon_number "1"; gene_name "RNU6-1199P"; gene_source "ensembl"; gene_biotype "snRNA"; transcript_name "RNU6-1199P-201"; transcript_source "ensembl"; exon_id "ENSE00001807223"; +1 lincRNA gene 694412 700305 . - . gene_id "ENSG00000240618"; gene_name "RP11-206L10.5"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 694412 700305 . - . gene_id "ENSG00000240618"; transcript_id "ENST00000417659"; gene_name "RP11-206L10.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.5-001"; transcript_source "havana"; +1 lincRNA exon 700103 700305 . - . gene_id "ENSG00000240618"; transcript_id "ENST00000417659"; exon_number "1"; gene_name "RP11-206L10.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.5-001"; transcript_source "havana"; exon_id "ENSE00001674071"; +1 lincRNA exon 694412 694503 . - . gene_id "ENSG00000240618"; transcript_id "ENST00000417659"; exon_number "2"; gene_name "RP11-206L10.5"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.5-001"; transcript_source "havana"; exon_id "ENSE00001609623"; +1 antisense gene 696291 697369 . + . gene_id "ENSG00000229905"; gene_name "RP11-206L10.4"; gene_source "havana"; gene_biotype "antisense"; +1 antisense transcript 696291 697369 . + . gene_id "ENSG00000229905"; transcript_id "ENST00000422528"; gene_name "RP11-206L10.4"; gene_source "havana"; gene_biotype "antisense"; transcript_name "RP11-206L10.4-001"; transcript_source "havana"; +1 antisense exon 696291 696534 . + . gene_id "ENSG00000229905"; transcript_id "ENST00000422528"; exon_number "1"; gene_name "RP11-206L10.4"; gene_source "havana"; gene_biotype "antisense"; transcript_name "RP11-206L10.4-001"; transcript_source "havana"; exon_id "ENSE00001695448"; +1 antisense exon 697158 697369 . + . gene_id "ENSG00000229905"; transcript_id "ENST00000422528"; exon_number "2"; gene_name "RP11-206L10.4"; gene_source "havana"; gene_biotype "antisense"; transcript_name "RP11-206L10.4-001"; transcript_source "havana"; exon_id "ENSE00001761034"; +1 lincRNA gene 700237 714006 . - . gene_id "ENSG00000228327"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 700237 714006 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; +1 lincRNA exon 713664 714006 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "1"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001715349"; +1 lincRNA exon 709551 709660 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "2"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001630466"; +1 lincRNA exon 708356 708487 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "3"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001740558"; +1 lincRNA exon 704877 705092 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "4"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001703665"; +1 lincRNA exon 703928 703993 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "5"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001780794"; +1 lincRNA exon 701709 701767 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "6"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001616222"; +1 lincRNA exon 700237 700627 . - . gene_id "ENSG00000228327"; transcript_id "ENST00000428504"; exon_number "7"; gene_name "RP11-206L10.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.2-001"; transcript_source "havana"; exon_id "ENSE00001723311"; +1 lincRNA gene 714150 745440 . + . gene_id "ENSG00000237491"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 714150 720070 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000434264"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-017"; transcript_source "havana"; +1 lincRNA exon 714150 714472 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000434264"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-017"; transcript_source "havana"; exon_id "ENSE00003705302"; +1 lincRNA exon 717317 717516 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000434264"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-017"; transcript_source "havana"; exon_id "ENSE00001741526"; +1 lincRNA exon 719750 720070 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000434264"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-017"; transcript_source "havana"; exon_id "ENSE00001596490"; +1 lincRNA transcript 714162 717571 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000457084"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-019"; transcript_source "havana"; +1 lincRNA exon 714162 714472 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000457084"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-019"; transcript_source "havana"; exon_id "ENSE00001719955"; +1 lincRNA exon 717317 717571 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000457084"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-019"; transcript_source "havana"; exon_id "ENSE00001642276"; +1 lincRNA transcript 714310 720035 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589899"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-003"; transcript_source "havana"; +1 lincRNA exon 714310 714472 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589899"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-003"; transcript_source "havana"; exon_id "ENSE00002824115"; +1 lincRNA exon 717317 717423 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589899"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-003"; transcript_source "havana"; exon_id "ENSE00002920037"; +1 lincRNA exon 718491 718743 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589899"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-003"; transcript_source "havana"; exon_id "ENSE00002767185"; +1 lincRNA exon 719750 720035 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589899"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-003"; transcript_source "havana"; exon_id "ENSE00002968432"; +1 lincRNA transcript 714317 719809 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000609830"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-021"; transcript_source "havana"; +1 lincRNA exon 714317 714472 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000609830"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-021"; transcript_source "havana"; exon_id "ENSE00003708104"; +1 lincRNA exon 717317 717516 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000609830"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-021"; transcript_source "havana"; exon_id "ENSE00001741526"; +1 lincRNA exon 718491 718743 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000609830"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-021"; transcript_source "havana"; exon_id "ENSE00002767185"; +1 lincRNA exon 719750 719809 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000609830"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-021"; transcript_source "havana"; exon_id "ENSE00003711221"; +1 lincRNA transcript 714436 740255 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000429505"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-001"; transcript_source "havana"; +1 lincRNA exon 714436 714472 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000429505"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-001"; transcript_source "havana"; exon_id "ENSE00001610263"; +1 lincRNA exon 739299 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000429505"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-001"; transcript_source "havana"; exon_id "ENSE00001706796"; +1 lincRNA exon 740156 740255 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000429505"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-001"; transcript_source "havana"; exon_id "ENSE00001669825"; +1 lincRNA transcript 719750 720139 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585826"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-006"; transcript_source "havana"; +1 lincRNA exon 719750 720139 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585826"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-006"; transcript_source "havana"; exon_id "ENSE00002849436"; +1 lincRNA transcript 719750 720357 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000592547"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-005"; transcript_source "havana"; +1 lincRNA exon 719750 720357 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000592547"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-005"; transcript_source "havana"; exon_id "ENSE00002792640"; +1 lincRNA transcript 719750 722246 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586928"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-004"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586928"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-004"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 721773 722246 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586928"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-004"; transcript_source "havana"; exon_id "ENSE00002830575"; +1 lincRNA transcript 719750 730893 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585745"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-008"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585745"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-008"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 730850 730893 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585745"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-008"; transcript_source "havana"; exon_id "ENSE00002897844"; +1 lincRNA transcript 719750 737256 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585768"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-009"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585768"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-009"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 736987 737256 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000585768"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-009"; transcript_source "havana"; exon_id "ENSE00002861078"; +1 lincRNA transcript 719750 740212 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000590848"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-007"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000590848"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-007"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 728262 728421 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000590848"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-007"; transcript_source "havana"; exon_id "ENSE00002906328"; +1 lincRNA exon 730850 730962 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000590848"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-007"; transcript_source "havana"; exon_id "ENSE00002897294"; +1 lincRNA exon 739331 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000590848"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-007"; transcript_source "havana"; exon_id "ENSE00002781548"; +1 lincRNA exon 740156 740212 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000590848"; exon_number "5"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-007"; transcript_source "havana"; exon_id "ENSE00002930618"; +1 lincRNA transcript 719750 740507 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587530"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-011"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587530"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-011"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 738947 739047 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587530"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-011"; transcript_source "havana"; exon_id "ENSE00002817360"; +1 lincRNA exon 739299 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587530"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-011"; transcript_source "havana"; exon_id "ENSE00001706796"; +1 lincRNA exon 740156 740507 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587530"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-011"; transcript_source "havana"; exon_id "ENSE00002850432"; +1 lincRNA transcript 719750 740507 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000591440"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-013"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000591440"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-013"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 739299 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000591440"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-013"; transcript_source "havana"; exon_id "ENSE00001706796"; +1 lincRNA exon 740156 740507 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000591440"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-013"; transcript_source "havana"; exon_id "ENSE00002850432"; +1 lincRNA transcript 719750 741839 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000593022"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-012"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000593022"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-012"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 739299 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000593022"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-012"; transcript_source "havana"; exon_id "ENSE00001706796"; +1 lincRNA exon 740156 740346 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000593022"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-012"; transcript_source "havana"; exon_id "ENSE00002904472"; +1 lincRNA exon 741766 741839 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000593022"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-012"; transcript_source "havana"; exon_id "ENSE00002772343"; +1 lincRNA transcript 719750 742694 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589531"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-018"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589531"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-018"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 739302 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589531"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-018"; transcript_source "havana"; exon_id "ENSE00002766583"; +1 lincRNA exon 740156 740346 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589531"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-018"; transcript_source "havana"; exon_id "ENSE00002904472"; +1 lincRNA exon 742597 742694 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000589531"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-018"; transcript_source "havana"; exon_id "ENSE00002894550"; +1 lincRNA transcript 719750 745109 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000588951"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-002"; transcript_source "havana"; +1 lincRNA exon 719750 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000588951"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-002"; transcript_source "havana"; exon_id "ENSE00002806114"; +1 lincRNA exon 739299 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000588951"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-002"; transcript_source "havana"; exon_id "ENSE00001706796"; +1 lincRNA exon 742597 742703 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000588951"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-002"; transcript_source "havana"; exon_id "ENSE00001787632"; +1 lincRNA exon 745038 745109 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000588951"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-002"; transcript_source "havana"; exon_id "ENSE00002883887"; +1 lincRNA transcript 719776 742701 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; +1 lincRNA exon 719776 719873 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002975428"; +1 lincRNA exon 728262 728421 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002906328"; +1 lincRNA exon 730850 730962 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002897294"; +1 lincRNA exon 738947 739047 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "4"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002817360"; +1 lincRNA exon 739331 739602 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "5"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002781548"; +1 lincRNA exon 740156 740346 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "6"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002904472"; +1 lincRNA exon 742597 742701 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000586288"; exon_number "7"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-010"; transcript_source "havana"; exon_id "ENSE00002877855"; +1 lincRNA transcript 721180 723052 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000591702"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-020"; transcript_source "havana"; +1 lincRNA exon 721180 723052 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000591702"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-020"; transcript_source "havana"; exon_id "ENSE00002846108"; +1 lincRNA transcript 721320 722513 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000358533"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-201"; transcript_source "ensembl"; +1 lincRNA exon 721320 722513 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000358533"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-201"; transcript_source "ensembl"; exon_id "ENSE00001432917"; +1 lincRNA transcript 740156 740650 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587126"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-015"; transcript_source "havana"; +1 lincRNA exon 740156 740650 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000587126"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-015"; transcript_source "havana"; exon_id "ENSE00002739987"; +1 lincRNA transcript 740179 742845 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000443772"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-014"; transcript_source "havana"; +1 lincRNA exon 740179 740346 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000443772"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-014"; transcript_source "havana"; exon_id "ENSE00001776151"; +1 lincRNA exon 742597 742845 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000443772"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-014"; transcript_source "havana"; exon_id "ENSE00001657688"; +1 lincRNA transcript 740312 745440 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000412115"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-016"; transcript_source "havana"; +1 lincRNA exon 740312 740346 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000412115"; exon_number "1"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-016"; transcript_source "havana"; exon_id "ENSE00001730958"; +1 lincRNA exon 742597 742703 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000412115"; exon_number "2"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-016"; transcript_source "havana"; exon_id "ENSE00001787632"; +1 lincRNA exon 745002 745440 . + . gene_id "ENSG00000237491"; transcript_id "ENST00000412115"; exon_number "3"; gene_name "RP11-206L10.9"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-206L10.9-016"; transcript_source "havana"; exon_id "ENSE00001615350"; +1 pseudogene gene 736259 745541 . - . gene_id "ENSG00000230092"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; +1 transcribed_unprocessed_pseudogene transcript 736259 745541 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000590817"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-001"; transcript_source "havana"; +1 transcribed_unprocessed_pseudogene exon 745447 745541 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000590817"; exon_number "1"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-001"; transcript_source "havana"; exon_id "ENSE00001651951"; +1 transcribed_unprocessed_pseudogene exon 743954 744003 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000590817"; exon_number "2"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-001"; transcript_source "havana"; exon_id "ENSE00001782999"; +1 transcribed_unprocessed_pseudogene exon 741179 741271 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000590817"; exon_number "3"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-001"; transcript_source "havana"; exon_id "ENSE00001640641"; +1 transcribed_unprocessed_pseudogene exon 736259 736543 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000590817"; exon_number "4"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-001"; transcript_source "havana"; exon_id "ENSE00001716345"; +1 processed_transcript transcript 736259 745541 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000447500"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-002"; transcript_source "havana"; +1 processed_transcript exon 745447 745541 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000447500"; exon_number "1"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-002"; transcript_source "havana"; exon_id "ENSE00001651951"; +1 processed_transcript exon 743954 744003 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000447500"; exon_number "2"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-002"; transcript_source "havana"; exon_id "ENSE00001782999"; +1 processed_transcript exon 741179 741271 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000447500"; exon_number "3"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-002"; transcript_source "havana"; exon_id "ENSE00001640641"; +1 processed_transcript exon 736259 736543 . - . gene_id "ENSG00000230092"; transcript_id "ENST00000447500"; exon_number "4"; gene_name "RP11-206L10.8"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "RP11-206L10.8-002"; transcript_source "havana"; exon_id "ENSE00001716345"; +1 protein_coding gene 738532 739137 . - . gene_id "ENSG00000269831"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; +1 protein_coding transcript 738532 739137 . - . gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; +1 protein_coding exon 739121 739137 . - . gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; exon_number "1"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; exon_id "ENSE00003063549"; +1 protein_coding CDS 739121 739137 . - 0 gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; exon_number "1"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; protein_id "ENSP00000468859"; +1 protein_coding exon 738788 738812 . - . gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; exon_number "2"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; exon_id "ENSE00003084653"; +1 protein_coding CDS 738788 738812 . - 1 gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; exon_number "2"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; protein_id "ENSP00000468859"; +1 protein_coding exon 738532 738618 . - . gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; exon_number "3"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; exon_id "ENSE00003138540"; +1 protein_coding CDS 738532 738618 . - 0 gene_id "ENSG00000269831"; transcript_id "ENST00000599533"; exon_number "3"; gene_name "AL669831.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL669831.1-201"; transcript_source "ensembl"; protein_id "ENSP00000468859"; +1 processed_transcript gene 745489 753092 . - . gene_id "ENSG00000240453"; gene_name "RP11-206L10.10"; gene_source "havana"; gene_biotype "processed_transcript"; +1 processed_transcript transcript 745489 753092 . - . gene_id "ENSG00000240453"; transcript_id "ENST00000435300"; gene_name "RP11-206L10.10"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-206L10.10-001"; transcript_source "havana"; +1 processed_transcript exon 752753 753092 . - . gene_id "ENSG00000240453"; transcript_id "ENST00000435300"; exon_number "1"; gene_name "RP11-206L10.10"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-206L10.10-001"; transcript_source "havana"; exon_id "ENSE00001746491"; +1 processed_transcript exon 745489 745550 . - . gene_id "ENSG00000240453"; transcript_id "ENST00000435300"; exon_number "2"; gene_name "RP11-206L10.10"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "RP11-206L10.10-001"; transcript_source "havana"; exon_id "ENSE00001674926"; +1 lincRNA gene 752751 755214 . + . gene_id "ENSG00000177757"; gene_name "FAM87B"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 752751 755214 . + . gene_id "ENSG00000177757"; transcript_id "ENST00000326734"; gene_name "FAM87B"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM87B-001"; transcript_source "ensembl_havana"; +1 lincRNA exon 752751 753582 . + . gene_id "ENSG00000177757"; transcript_id "ENST00000326734"; exon_number "1"; gene_name "FAM87B"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM87B-001"; transcript_source "ensembl_havana"; exon_id "ENSE00001249411"; +1 lincRNA exon 754103 755214 . + . gene_id "ENSG00000177757"; transcript_id "ENST00000326734"; exon_number "2"; gene_name "FAM87B"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM87B-001"; transcript_source "ensembl_havana"; exon_id "ENSE00001711564"; +1 lincRNA gene 761586 762902 . - . gene_id "ENSG00000225880"; gene_name "LINC00115"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 761586 762902 . - . gene_id "ENSG00000225880"; transcript_id "ENST00000473798"; gene_name "LINC00115"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "LINC00115-001"; transcript_source "havana"; +1 lincRNA exon 761586 762902 . - . gene_id "ENSG00000225880"; transcript_id "ENST00000473798"; exon_number "1"; gene_name "LINC00115"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "LINC00115-001"; transcript_source "havana"; exon_id "ENSE00001890287"; +1 lincRNA transcript 761589 762886 . - . gene_id "ENSG00000225880"; transcript_id "ENST00000536430"; gene_name "LINC00115"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "LINC00115-201"; transcript_source "ensembl"; +1 lincRNA exon 761589 762886 . - . gene_id "ENSG00000225880"; transcript_id "ENST00000536430"; exon_number "1"; gene_name "LINC00115"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "LINC00115-201"; transcript_source "ensembl"; exon_id "ENSE00002285202"; +1 processed_transcript gene 762988 794826 . + . gene_id "ENSG00000228794"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; +1 lincRNA transcript 762988 794826 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000445118"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-001"; transcript_source "havana"; +1 lincRNA exon 762988 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000445118"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-001"; transcript_source "havana"; exon_id "ENSE00001768150"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000445118"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-001"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 787307 787490 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000445118"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-001"; transcript_source "havana"; exon_id "ENSE00001678509"; +1 lincRNA exon 788051 788146 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000445118"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-001"; transcript_source "havana"; exon_id "ENSE00001778823"; +1 lincRNA exon 788771 794826 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000445118"; exon_number "5"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-001"; transcript_source "havana"; exon_id "ENSE00001617947"; +1 lincRNA transcript 763041 787367 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000610067"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-009"; transcript_source "havana"; +1 lincRNA exon 763041 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000610067"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-009"; transcript_source "havana"; exon_id "ENSE00003703791"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000610067"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-009"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 783034 783186 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000610067"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-009"; transcript_source "havana"; exon_id "ENSE00001688192"; +1 lincRNA exon 784864 784982 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000610067"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-009"; transcript_source "havana"; exon_id "ENSE00003702545"; +1 lincRNA exon 787307 787367 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000610067"; exon_number "5"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-009"; transcript_source "havana"; exon_id "ENSE00003704746"; +1 lincRNA transcript 763047 777118 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000441765"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-006"; transcript_source "havana"; +1 lincRNA exon 763047 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000441765"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-006"; transcript_source "havana"; exon_id "ENSE00001711288"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000441765"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-006"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 776580 777118 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000441765"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-006"; transcript_source "havana"; exon_id "ENSE00001736174"; +1 lincRNA transcript 763049 787378 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609139"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-010"; transcript_source "havana"; +1 lincRNA exon 763049 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609139"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-010"; transcript_source "havana"; exon_id "ENSE00003703633"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609139"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-010"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 776580 776753 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609139"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-010"; transcript_source "havana"; exon_id "ENSE00003711186"; +1 lincRNA exon 787307 787378 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609139"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-010"; transcript_source "havana"; exon_id "ENSE00003705678"; +1 lincRNA transcript 763053 789006 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; +1 lincRNA exon 763053 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; exon_id "ENSE00001671329"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 783034 783186 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; exon_id "ENSE00001688192"; +1 lincRNA exon 787307 787490 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; exon_id "ENSE00001678509"; +1 lincRNA exon 788051 788146 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; exon_number "5"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; exon_id "ENSE00001778823"; +1 lincRNA exon 788771 789006 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000449005"; exon_number "6"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-004"; transcript_source "havana"; exon_id "ENSE00001775761"; +1 lincRNA transcript 763079 788146 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000416570"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-003"; transcript_source "havana"; +1 lincRNA exon 763079 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000416570"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-003"; transcript_source "havana"; exon_id "ENSE00001546816"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000416570"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-003"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 783034 783186 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000416570"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-003"; transcript_source "havana"; exon_id "ENSE00001688192"; +1 lincRNA exon 787307 787490 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000416570"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-003"; transcript_source "havana"; exon_id "ENSE00001678509"; +1 lincRNA exon 788051 788146 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000416570"; exon_number "5"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-003"; transcript_source "havana"; exon_id "ENSE00001778823"; +1 lincRNA transcript 763079 788146 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000448975"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-008"; transcript_source "havana"; +1 lincRNA exon 763079 763155 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000448975"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-008"; transcript_source "havana"; exon_id "ENSE00001546816"; +1 lincRNA exon 764383 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000448975"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-008"; transcript_source "havana"; exon_id "ENSE00001656290"; +1 lincRNA exon 783034 783186 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000448975"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-008"; transcript_source "havana"; exon_id "ENSE00001688192"; +1 lincRNA exon 787307 787490 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000448975"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-008"; transcript_source "havana"; exon_id "ENSE00001678509"; +1 lincRNA exon 788051 788146 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000448975"; exon_number "5"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-008"; transcript_source "havana"; exon_id "ENSE00001778823"; +1 lincRNA transcript 764443 785731 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609009"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-012"; transcript_source "havana"; +1 lincRNA exon 764443 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609009"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-012"; transcript_source "havana"; exon_id "ENSE00003709543"; +1 lincRNA exon 783034 783186 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609009"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-012"; transcript_source "havana"; exon_id "ENSE00001688192"; +1 lincRNA exon 784864 784982 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609009"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-012"; transcript_source "havana"; exon_id "ENSE00003702545"; +1 lincRNA exon 785558 785731 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000609009"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-012"; transcript_source "havana"; exon_id "ENSE00003707380"; +1 lincRNA transcript 764443 785731 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000608189"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-011"; transcript_source "havana"; +1 lincRNA exon 764443 764484 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000608189"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-011"; transcript_source "havana"; exon_id "ENSE00003709543"; +1 lincRNA exon 783034 783186 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000608189"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-011"; transcript_source "havana"; exon_id "ENSE00001688192"; +1 lincRNA exon 784864 784982 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000608189"; exon_number "3"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-011"; transcript_source "havana"; exon_id "ENSE00003702545"; +1 lincRNA exon 785561 785731 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000608189"; exon_number "4"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-011"; transcript_source "havana"; exon_id "ENSE00003707413"; +1 lincRNA transcript 766985 777400 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000415295"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-007"; transcript_source "havana"; +1 lincRNA exon 766985 767057 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000415295"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-007"; transcript_source "havana"; exon_id "ENSE00001802996"; +1 lincRNA exon 776580 777400 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000415295"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-007"; transcript_source "havana"; exon_id "ENSE00001614719"; +1 retained_intron transcript 786728 788132 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000425657"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-005"; transcript_source "havana"; +1 retained_intron exon 786728 787490 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000425657"; exon_number "1"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-005"; transcript_source "havana"; exon_id "ENSE00001622987"; +1 retained_intron exon 788051 788132 . + . gene_id "ENSG00000228794"; transcript_id "ENST00000425657"; exon_number "2"; gene_name "LINC01128"; gene_source "havana"; gene_biotype "processed_transcript"; transcript_name "LINC01128-005"; transcript_source "havana"; exon_id "ENSE00001729954"; +1 lincRNA gene 803451 812283 . - . gene_id "ENSG00000230368"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 803451 812283 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000446136"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-001"; transcript_source "havana"; +1 lincRNA exon 812126 812283 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000446136"; exon_number "1"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-001"; transcript_source "havana"; exon_id "ENSE00001767181"; +1 lincRNA exon 809492 810535 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000446136"; exon_number "2"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-001"; transcript_source "havana"; exon_id "ENSE00001733976"; +1 lincRNA exon 803451 804055 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000446136"; exon_number "3"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-001"; transcript_source "havana"; exon_id "ENSE00001645595"; +1 lincRNA transcript 803620 805581 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000432963"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-003"; transcript_source "ensembl_havana"; +1 lincRNA exon 805466 805581 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000432963"; exon_number "1"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-003"; transcript_source "ensembl_havana"; exon_id "ENSE00001791782"; +1 lincRNA exon 804908 804955 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000432963"; exon_number "2"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-003"; transcript_source "ensembl_havana"; exon_id "ENSE00001605362"; +1 lincRNA exon 804007 804055 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000432963"; exon_number "3"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-003"; transcript_source "ensembl_havana"; exon_id "ENSE00001649469"; +1 lincRNA exon 803620 803910 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000432963"; exon_number "4"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-003"; transcript_source "ensembl_havana"; exon_id "ENSE00001759635"; +1 lincRNA transcript 803783 812182 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000427857"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-002"; transcript_source "havana"; +1 lincRNA exon 812126 812182 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000427857"; exon_number "1"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-002"; transcript_source "havana"; exon_id "ENSE00001790000"; +1 lincRNA exon 810420 810535 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000427857"; exon_number "2"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-002"; transcript_source "havana"; exon_id "ENSE00001634033"; +1 lincRNA exon 803783 804055 . - . gene_id "ENSG00000230368"; transcript_id "ENST00000427857"; exon_number "3"; gene_name "FAM41C"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "FAM41C-002"; transcript_source "havana"; exon_id "ENSE00001640201"; +1 pseudogene gene 808672 809729 . + . gene_id "ENSG00000234711"; gene_name "TUBB8P11"; gene_source "havana"; gene_biotype "pseudogene"; +1 unprocessed_pseudogene transcript 808672 809729 . + . gene_id "ENSG00000234711"; transcript_id "ENST00000415481"; gene_name "TUBB8P11"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "TUBB8P11-001"; transcript_source "havana"; +1 unprocessed_pseudogene exon 808672 809729 . + . gene_id "ENSG00000234711"; transcript_id "ENST00000415481"; exon_number "1"; gene_name "TUBB8P11"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "TUBB8P11-001"; transcript_source "havana"; exon_id "ENSE00001714024"; +1 protein_coding gene 818043 819983 . + . gene_id "ENSG00000269308"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; +1 protein_coding transcript 818043 819983 . + . gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; +1 protein_coding exon 818043 818058 . + . gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "1"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; exon_id "ENSE00003079649"; +1 protein_coding CDS 818043 818058 . + 0 gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "1"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; protein_id "ENSP00000470877"; +1 protein_coding exon 819496 819513 . + . gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "2"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; exon_id "ENSE00003048391"; +1 protein_coding CDS 819496 819513 . + 2 gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "2"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; protein_id "ENSP00000470877"; +1 protein_coding exon 819961 819983 . + . gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "3"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; exon_id "ENSE00003055565"; +1 protein_coding CDS 819961 819980 . + 2 gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "3"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; protein_id "ENSP00000470877"; +1 protein_coding stop_codon 819981 819983 . + 0 gene_id "ENSG00000269308"; transcript_id "ENST00000594233"; exon_number "3"; gene_name "AL645608.2"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.2-201"; transcript_source "ensembl"; +1 lincRNA gene 840214 851356 . + . gene_id "ENSG00000272438"; gene_name "RP11-54O7.16"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 840214 851356 . + . gene_id "ENSG00000272438"; transcript_id "ENST00000607769"; gene_name "RP11-54O7.16"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.16-001"; transcript_source "havana"; +1 lincRNA exon 840214 840337 . + . gene_id "ENSG00000272438"; transcript_id "ENST00000607769"; exon_number "1"; gene_name "RP11-54O7.16"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.16-001"; transcript_source "havana"; exon_id "ENSE00003700027"; +1 lincRNA exon 851130 851356 . + . gene_id "ENSG00000272438"; transcript_id "ENST00000607769"; exon_number "2"; gene_name "RP11-54O7.16"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.16-001"; transcript_source "havana"; exon_id "ENSE00003696845"; +1 lincRNA gene 846815 850328 . + . gene_id "ENSG00000230699"; gene_name "RP11-54O7.1"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 846815 850328 . + . gene_id "ENSG00000230699"; transcript_id "ENST00000448179"; gene_name "RP11-54O7.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.1-001"; transcript_source "havana"; +1 lincRNA exon 846815 846853 . + . gene_id "ENSG00000230699"; transcript_id "ENST00000448179"; exon_number "1"; gene_name "RP11-54O7.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.1-001"; transcript_source "havana"; exon_id "ENSE00001656547"; +1 lincRNA exon 847325 850328 . + . gene_id "ENSG00000230699"; transcript_id "ENST00000448179"; exon_number "2"; gene_name "RP11-54O7.1"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.1-001"; transcript_source "havana"; exon_id "ENSE00001646341"; +1 lincRNA gene 849551 850351 . + . gene_id "ENSG00000241180"; gene_name "RP11-54O7.2"; gene_source "havana"; gene_biotype "lincRNA"; +1 lincRNA transcript 849551 850351 . + . gene_id "ENSG00000241180"; transcript_id "ENST00000398216"; gene_name "RP11-54O7.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.2-001"; transcript_source "havana"; +1 lincRNA exon 849551 849824 . + . gene_id "ENSG00000241180"; transcript_id "ENST00000398216"; exon_number "1"; gene_name "RP11-54O7.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.2-001"; transcript_source "havana"; exon_id "ENSE00001653359"; +1 lincRNA exon 850183 850351 . + . gene_id "ENSG00000241180"; transcript_id "ENST00000398216"; exon_number "2"; gene_name "RP11-54O7.2"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.2-001"; transcript_source "havana"; exon_id "ENSE00001670060"; +1 lincRNA gene 852245 856396 . - . gene_id "ENSG00000223764"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; +1 retained_intron transcript 852245 856396 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000609207"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-003"; transcript_source "havana"; +1 retained_intron exon 852245 856396 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000609207"; exon_number "1"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-003"; transcript_source "havana"; exon_id "ENSE00003706193"; +1 lincRNA transcript 852250 855072 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000417705"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-001"; transcript_source "havana"; +1 lincRNA exon 854715 855072 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000417705"; exon_number "1"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-001"; transcript_source "havana"; exon_id "ENSE00001655884"; +1 lincRNA exon 854205 854295 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000417705"; exon_number "2"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-001"; transcript_source "havana"; exon_id "ENSE00001739486"; +1 lincRNA exon 853402 853490 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000417705"; exon_number "3"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-001"; transcript_source "havana"; exon_id "ENSE00001702311"; +1 lincRNA exon 852250 853100 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000417705"; exon_number "4"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-001"; transcript_source "havana"; exon_id "ENSE00001764582"; +1 retained_intron transcript 852750 853914 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000432961"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-002"; transcript_source "havana"; +1 retained_intron exon 853402 853914 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000432961"; exon_number "1"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-002"; transcript_source "havana"; exon_id "ENSE00001613756"; +1 retained_intron exon 852750 852866 . - . gene_id "ENSG00000223764"; transcript_id "ENST00000432961"; exon_number "2"; gene_name "RP11-54O7.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-54O7.3-002"; transcript_source "havana"; exon_id "ENSE00001697161"; +1 protein_coding gene 860260 879955 . + . gene_id "ENSG00000187634"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 protein_coding transcript 860260 874671 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 860260 860328 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00001637883"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 861302 861393 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00001763717"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 861322 861393 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; protein_id "ENSP00000411579"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 865535 865716 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00002727207"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 865535 865716 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; protein_id "ENSP00000411579"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 866419 866469 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00002696520"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 866419 866469 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; protein_id "ENSP00000411579"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 871152 871276 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00002703998"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 871152 871276 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; protein_id "ENSP00000411579"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 874420 874509 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00002686739"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 874420 874509 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; protein_id "ENSP00000411579"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 874655 874671 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; exon_id "ENSE00001608769"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 874655 874671 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; protein_id "ENSP00000411579"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding UTR 860260 860328 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding UTR 861302 861321 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000420190"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-011"; transcript_source "havana"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding transcript 860530 871173 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 860530 860569 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; exon_id "ENSE00001481182"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 861302 861393 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; exon_id "ENSE00001763717"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 861322 861393 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; protein_id "ENSP00000393181"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 865535 865716 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; exon_id "ENSE00002727207"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 865535 865716 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; protein_id "ENSP00000393181"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 866419 866469 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; exon_id "ENSE00002696520"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 866419 866469 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; protein_id "ENSP00000393181"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding exon 871152 871173 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; exon_id "ENSE00001631320"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding CDS 871152 871173 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; protein_id "ENSP00000393181"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding UTR 860530 860569 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding UTR 861302 861321 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000437963"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-003"; transcript_source "havana"; tag "cds_end_NF"; tag "mRNA_end_NF"; +1 protein_coding transcript 861118 879955 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; +1 protein_coding exon 861118 861180 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00001864899"; +1 protein_coding exon 861302 861393 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00001763717"; +1 protein_coding CDS 861322 861393 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding start_codon 861322 861324 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; +1 protein_coding exon 865535 865716 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002727207"; +1 protein_coding CDS 865535 865716 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 866419 866469 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002696520"; +1 protein_coding CDS 866419 866469 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 871152 871276 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002703998"; +1 protein_coding CDS 871152 871276 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 874420 874509 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002686739"; +1 protein_coding CDS 874420 874509 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 874655 874840 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002715021"; +1 protein_coding CDS 874655 874840 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 876524 876686 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "8"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00003477353"; +1 protein_coding CDS 876524 876686 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "8"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 877516 877631 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "9"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00003681266"; +1 protein_coding CDS 877516 877631 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "9"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 877790 877868 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "10"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00003675531"; +1 protein_coding CDS 877790 877868 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "10"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 877939 878438 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "11"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002728091"; +1 protein_coding CDS 877939 878438 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "11"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 878633 878757 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "12"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002733131"; +1 protein_coding CDS 878633 878757 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "12"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 879078 879188 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "13"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00002692620"; +1 protein_coding CDS 879078 879188 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "13"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding exon 879288 879955 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "14"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; exon_id "ENSE00001804027"; +1 protein_coding CDS 879288 879530 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "14"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; protein_id "ENSP00000342313"; +1 protein_coding stop_codon 879531 879533 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; exon_number "14"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; +1 protein_coding UTR 861118 861180 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; +1 protein_coding UTR 861302 861321 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; +1 protein_coding UTR 879534 879955 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000342066"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-010"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS2"; +1 protein_coding transcript 865692 879955 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 865692 865716 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00001768193"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 865692 865716 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 866419 866469 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00002696520"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 866419 866469 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 871152 871276 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00002703998"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 871152 871276 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 874420 874509 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00002686739"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 874420 874509 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 874655 874792 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00001708361"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 874655 874792 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 876524 876686 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00003477353"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 876524 876686 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 877516 877631 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00003681266"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 877516 877631 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 877790 877868 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "8"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00003675531"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 877790 877868 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "8"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 877939 878438 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "9"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00002728091"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 877939 878438 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "9"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 878633 878757 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "10"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00002733131"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 878633 878757 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "10"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 879078 879188 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "11"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00002692620"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 879078 879188 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "11"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 879288 879955 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "12"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; exon_id "ENSE00001804027"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 879288 879533 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; exon_number "12"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; protein_id "ENSP00000349216"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding UTR 879534 879955 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000341065"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-001"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding transcript 874655 879639 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 874655 874840 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00002715021"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 874655 874840 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 876524 876686 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00003477353"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 876524 876686 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 877516 877631 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00003681266"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 877516 877631 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 877790 877868 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00003675531"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 877790 877868 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 877939 878438 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00002728091"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 877939 878438 . + 1 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "5"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 878633 878757 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00002733131"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 878633 878757 . + 2 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "6"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding exon 879078 879639 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; exon_id "ENSE00001631574"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding CDS 879078 879533 . + 0 gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; exon_number "7"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; protein_id "ENSP00000412228"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 protein_coding UTR 879534 879639 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000455979"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 processed_transcript transcript 875726 877553 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000478729"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-006"; transcript_source "havana"; +1 processed_transcript exon 875726 875842 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000478729"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-006"; transcript_source "havana"; exon_id "ENSE00001953327"; +1 processed_transcript exon 876524 876686 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000478729"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-006"; transcript_source "havana"; exon_id "ENSE00003686968"; +1 processed_transcript exon 877516 877553 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000478729"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-006"; transcript_source "havana"; exon_id "ENSE00001881351"; +1 retained_intron transcript 876456 878374 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000474461"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-007"; transcript_source "havana"; +1 retained_intron exon 876456 876686 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000474461"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-007"; transcript_source "havana"; exon_id "ENSE00001939283"; +1 retained_intron exon 877516 877631 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000474461"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-007"; transcript_source "havana"; exon_id "ENSE00003595355"; +1 retained_intron exon 877790 877868 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000474461"; exon_number "3"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-007"; transcript_source "havana"; exon_id "ENSE00003689246"; +1 retained_intron exon 877939 878374 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000474461"; exon_number "4"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-007"; transcript_source "havana"; exon_id "ENSE00001887416"; +1 retained_intron transcript 877483 878182 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000466827"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-008"; transcript_source "havana"; +1 retained_intron exon 877483 877631 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000466827"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-008"; transcript_source "havana"; exon_id "ENSE00001885801"; +1 retained_intron exon 877790 878182 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000466827"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-008"; transcript_source "havana"; exon_id "ENSE00001884257"; +1 retained_intron transcript 877546 878272 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000464948"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-009"; transcript_source "havana"; +1 retained_intron exon 877546 877868 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000464948"; exon_number "1"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-009"; transcript_source "havana"; exon_id "ENSE00001944279"; +1 retained_intron exon 877939 878272 . + . gene_id "ENSG00000187634"; transcript_id "ENST00000464948"; exon_number "2"; gene_name "SAMD11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "SAMD11-009"; transcript_source "havana"; exon_id "ENSE00001857616"; +1 protein_coding gene 861264 866445 . - . gene_id "ENSG00000268179"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; +1 protein_coding transcript 861264 866445 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; +1 protein_coding exon 866426 866445 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "1"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; exon_id "ENSE00003021192"; +1 protein_coding CDS 866426 866445 . - 0 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "1"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; protein_id "ENSP00000471152"; +1 protein_coding start_codon 866443 866445 . - 0 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "1"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; +1 protein_coding exon 865990 865996 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "2"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; exon_id "ENSE00003059724"; +1 protein_coding CDS 865990 865996 . - 1 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "2"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; protein_id "ENSP00000471152"; +1 protein_coding exon 865666 865719 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "3"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; exon_id "ENSE00003023978"; +1 protein_coding CDS 865666 865719 . - 0 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "3"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; protein_id "ENSP00000471152"; +1 protein_coding exon 865556 865660 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "4"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; exon_id "ENSE00003117468"; +1 protein_coding CDS 865556 865660 . - 0 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "4"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; protein_id "ENSP00000471152"; +1 protein_coding exon 863255 863261 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "5"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; exon_id "ENSE00003169115"; +1 protein_coding CDS 863255 863261 . - 0 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "5"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; protein_id "ENSP00000471152"; +1 protein_coding exon 861264 861406 . - . gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "6"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; exon_id "ENSE00003183674"; +1 protein_coding CDS 861264 861406 . - 2 gene_id "ENSG00000268179"; transcript_id "ENST00000598827"; exon_number "6"; gene_name "AL645608.1"; gene_source "ensembl"; gene_biotype "protein_coding"; transcript_name "AL645608.1-201"; transcript_source "ensembl"; protein_id "ENSP00000471152"; +1 protein_coding gene 879584 894689 . - . gene_id "ENSG00000188976"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 retained_intron transcript 879584 882440 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000483767"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-003"; transcript_source "havana"; +1 retained_intron exon 881782 882440 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000483767"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-003"; transcript_source "havana"; exon_id "ENSE00001938674"; +1 retained_intron exon 881553 881666 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000483767"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-003"; transcript_source "havana"; exon_id "ENSE00003681316"; +1 retained_intron exon 880898 881033 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000483767"; exon_number "3"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-003"; transcript_source "havana"; exon_id "ENSE00003481297"; +1 retained_intron exon 880422 880526 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000483767"; exon_number "4"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-003"; transcript_source "havana"; exon_id "ENSE00001826211"; +1 retained_intron exon 879584 880180 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000483767"; exon_number "5"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-003"; transcript_source "havana"; exon_id "ENSE00003459193"; +1 protein_coding transcript 879584 894670 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; +1 protein_coding exon 894595 894670 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00001926296"; +1 protein_coding CDS 894595 894620 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding start_codon 894618 894620 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; +1 protein_coding exon 894309 894461 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003591928"; +1 protein_coding CDS 894309 894461 . - 1 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 892479 892653 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "3"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003620005"; +1 protein_coding CDS 892479 892653 . - 1 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "3"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 892274 892405 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "4"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003567731"; +1 protein_coding CDS 892274 892405 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "4"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 891475 891595 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "5"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003589494"; +1 protein_coding CDS 891475 891595 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "5"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 891303 891393 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "6"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003687250"; +1 protein_coding CDS 891303 891393 . - 2 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "6"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 889384 889462 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "7"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00001380352"; +1 protein_coding CDS 889384 889462 . - 1 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "7"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 889162 889272 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "8"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003602238"; +1 protein_coding CDS 889162 889272 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "8"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 888555 888668 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "9"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003560627"; +1 protein_coding CDS 888555 888668 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "9"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 887792 887980 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "10"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003638394"; +1 protein_coding CDS 887792 887980 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "10"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 887380 887519 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "11"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003527689"; +1 protein_coding CDS 887380 887519 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "11"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 886507 886618 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "12"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003521833"; +1 protein_coding CDS 886507 886618 . - 1 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "12"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 883870 883983 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "13"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003500440"; +1 protein_coding CDS 883870 883983 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "13"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 883511 883612 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "14"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003657824"; +1 protein_coding CDS 883511 883612 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "14"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 881782 881925 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "15"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003554589"; +1 protein_coding CDS 881782 881925 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "15"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 881553 881666 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "16"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003603800"; +1 protein_coding CDS 881553 881666 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "16"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 880898 881033 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "17"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003682181"; +1 protein_coding CDS 880898 881033 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "17"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 880437 880526 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "18"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00001375393"; +1 protein_coding CDS 880437 880526 . - 2 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "18"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding exon 879584 880180 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "19"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; exon_id "ENSE00003486680"; +1 protein_coding CDS 880077 880180 . - 2 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "19"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; protein_id "ENSP00000317992"; +1 protein_coding stop_codon 880074 880076 . - 0 gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; exon_number "19"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; +1 protein_coding UTR 894621 894670 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; +1 protein_coding UTR 879584 880073 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000327044"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS3"; +1 retained_intron transcript 879585 893838 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; +1 retained_intron exon 892479 893838 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00001944259"; +1 retained_intron exon 892274 892405 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003546702"; +1 retained_intron exon 891475 891595 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "3"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003497251"; +1 retained_intron exon 891303 891393 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "4"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003472906"; +1 retained_intron exon 889384 889903 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "5"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00001918683"; +1 retained_intron exon 889162 889272 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "6"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003642636"; +1 retained_intron exon 888555 888668 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "7"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003483523"; +1 retained_intron exon 887792 887980 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "8"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003543641"; +1 retained_intron exon 887380 887519 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "9"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003485617"; +1 retained_intron exon 886507 886618 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "10"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003679235"; +1 retained_intron exon 883870 883983 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "11"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003524730"; +1 retained_intron exon 883511 883612 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "12"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003630998"; +1 retained_intron exon 881782 881925 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "13"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003688779"; +1 retained_intron exon 881553 881666 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "14"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003681316"; +1 retained_intron exon 880898 881033 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "15"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00003481297"; +1 retained_intron exon 880422 880526 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "16"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00001826211"; +1 retained_intron exon 879585 880180 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000477976"; exon_number "17"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-005"; transcript_source "havana"; exon_id "ENSE00001954015"; +1 processed_transcript transcript 880699 880942 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000496938"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-002"; transcript_source "havana"; +1 processed_transcript exon 880898 880942 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000496938"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-002"; transcript_source "havana"; exon_id "ENSE00001870981"; +1 processed_transcript exon 880699 880802 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000496938"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-002"; transcript_source "havana"; exon_id "ENSE00001829350"; +1 processed_transcript transcript 889806 894689 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; +1 processed_transcript exon 894595 894689 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00001911057"; +1 processed_transcript exon 894309 894461 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00003529593"; +1 processed_transcript exon 892479 892653 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "3"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00003600775"; +1 processed_transcript exon 892274 892405 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "4"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00003546702"; +1 processed_transcript exon 891475 891595 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "5"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00003497251"; +1 processed_transcript exon 891303 891393 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "6"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00003472906"; +1 processed_transcript exon 889806 889903 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000487214"; exon_number "7"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-006"; transcript_source "havana"; exon_id "ENSE00001853718"; +1 retained_intron transcript 893626 894636 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000469563"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-004"; transcript_source "havana"; +1 retained_intron exon 894595 894636 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000469563"; exon_number "1"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-004"; transcript_source "havana"; exon_id "ENSE00001883423"; +1 retained_intron exon 893626 894461 . - . gene_id "ENSG00000188976"; transcript_id "ENST00000469563"; exon_number "2"; gene_name "NOC2L"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "NOC2L-004"; transcript_source "havana"; exon_id "ENSE00001904703"; +1 protein_coding gene 895967 901095 . + . gene_id "ENSG00000187961"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 protein_coding transcript 895967 901095 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; +1 protein_coding exon 895967 896180 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00002291218"; +1 protein_coding CDS 896074 896180 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding start_codon 896074 896076 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; +1 protein_coding exon 896673 896932 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "2"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00001727488"; +1 protein_coding CDS 896673 896932 . + 1 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "2"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 897009 897130 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "3"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00002988116"; +1 protein_coding CDS 897009 897130 . + 2 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "3"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 897206 897427 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "4"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00003185989"; +1 protein_coding CDS 897206 897427 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "4"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 897735 897851 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "5"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00001375296"; +1 protein_coding CDS 897735 897851 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "5"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 898084 898297 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "6"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00001368267"; +1 protein_coding CDS 898084 898297 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "6"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 898489 898633 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "7"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00001365077"; +1 protein_coding CDS 898489 898633 . + 2 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "7"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 898717 898884 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "8"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00003600458"; +1 protein_coding CDS 898717 898884 . + 1 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "8"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 899300 899388 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "9"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00003624001"; +1 protein_coding CDS 899300 899388 . + 1 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "9"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 899487 899560 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "10"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00001375324"; +1 protein_coding CDS 899487 899560 . + 2 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "10"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 899729 899910 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "11"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00003479668"; +1 protein_coding CDS 899729 899910 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "11"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding exon 900343 901095 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "12"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; exon_id "ENSE00001372585"; +1 protein_coding CDS 900343 900568 . + 1 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "12"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; protein_id "ENSP00000343930"; +1 protein_coding stop_codon 900569 900571 . + 0 gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; exon_number "12"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; +1 protein_coding UTR 895967 896073 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; +1 protein_coding UTR 900572 901095 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000338591"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS30550"; +1 retained_intron transcript 896829 897858 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000463212"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-003"; transcript_source "havana"; +1 retained_intron exon 896829 897130 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000463212"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-003"; transcript_source "havana"; exon_id "ENSE00001880471"; +1 retained_intron exon 897206 897858 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000463212"; exon_number "2"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-003"; transcript_source "havana"; exon_id "ENSE00001827563"; +1 nonsense_mediated_decay transcript 898107 899910 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay exon 898107 898297 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; exon_id "ENSE00001944508"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay CDS 898107 898297 . + 1 gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; protein_id "ENSP00000463694"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay exon 898412 898633 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "2"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; exon_id "ENSE00001858232"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay CDS 898412 898633 . + 2 gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "2"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; protein_id "ENSP00000463694"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay exon 898717 898884 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "3"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; exon_id "ENSE00003477911"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay CDS 898717 898766 . + 2 gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "3"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; protein_id "ENSP00000463694"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay exon 899300 899388 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "4"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; exon_id "ENSE00003636485"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay exon 899487 899547 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "5"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; exon_id "ENSE00001846219"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay exon 899729 899910 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; exon_number "6"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; exon_id "ENSE00003591545"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay UTR 898767 898884 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay UTR 899300 899388 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay UTR 899487 899547 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 nonsense_mediated_decay UTR 899729 899910 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000466300"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-004"; transcript_source "havana"; tag "cds_start_NF"; tag "mRNA_start_NF"; +1 retained_intron transcript 898932 899544 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000481067"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-005"; transcript_source "havana"; +1 retained_intron exon 898932 899388 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000481067"; exon_number "1"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-005"; transcript_source "havana"; exon_id "ENSE00001848531"; +1 retained_intron exon 899487 899544 . + . gene_id "ENSG00000187961"; transcript_id "ENST00000481067"; exon_number "2"; gene_name "KLHL17"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "KLHL17-005"; transcript_source "havana"; exon_id "ENSE00001844258"; +1 protein_coding gene 901877 911245 . + . gene_id "ENSG00000187583"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +1 protein_coding transcript 901877 910488 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; +1 protein_coding exon 901877 901994 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001363936"; +1 protein_coding CDS 901912 901994 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding start_codon 901912 901914 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; +1 protein_coding exon 902084 902183 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "2"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001364180"; +1 protein_coding CDS 902084 902183 . + 1 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "2"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 905657 905803 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "3"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001373621"; +1 protein_coding CDS 905657 905803 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "3"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 905901 905981 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "4"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001374286"; +1 protein_coding CDS 905901 905981 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "4"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 906066 906138 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "5"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001385460"; +1 protein_coding CDS 906066 906138 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "5"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 906259 906386 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "6"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001374990"; +1 protein_coding CDS 906259 906386 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "6"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 906493 906588 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "7"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001368630"; +1 protein_coding CDS 906493 906588 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "7"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 906704 906784 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "8"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001380204"; +1 protein_coding CDS 906704 906784 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "8"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 907455 907530 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "9"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001375540"; +1 protein_coding CDS 907455 907530 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "9"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 907668 907804 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "10"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001365628"; +1 protein_coding CDS 907668 907804 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "10"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 908241 908390 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "11"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001386720"; +1 protein_coding CDS 908241 908390 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "11"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 908566 908706 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "12"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001377573"; +1 protein_coding CDS 908566 908706 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "12"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 908880 909020 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "13"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001371278"; +1 protein_coding CDS 908880 909020 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "13"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 909213 909431 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "14"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001371226"; +1 protein_coding CDS 909213 909431 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "14"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 909696 909744 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "15"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001370044"; +1 protein_coding CDS 909696 909744 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "15"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding exon 909822 910488 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "16"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; exon_id "ENSE00001919329"; +1 protein_coding CDS 909822 909952 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "16"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; protein_id "ENSP00000368720"; +1 protein_coding stop_codon 909953 909955 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; exon_number "16"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; +1 protein_coding UTR 901877 901911 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; +1 protein_coding UTR 909956 910488 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379410"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS4"; +1 protein_coding transcript 901882 910388 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; +1 protein_coding exon 901882 901994 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00002268161"; +1 protein_coding CDS 901912 901994 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding start_codon 901912 901914 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; +1 protein_coding exon 902084 902183 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "2"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001364180"; +1 protein_coding CDS 902084 902183 . + 1 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "2"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 905657 905803 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "3"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001373621"; +1 protein_coding CDS 905657 905803 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "3"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 905901 905981 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "4"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001374286"; +1 protein_coding CDS 905901 905981 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "4"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 906066 906386 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "5"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001480873"; +1 protein_coding CDS 906066 906386 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "5"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 906457 906588 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "6"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00003549084"; +1 protein_coding CDS 906457 906588 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "6"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 906704 906784 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "7"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001380204"; +1 protein_coding CDS 906704 906784 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "7"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 907455 907530 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "8"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001375540"; +1 protein_coding CDS 907455 907530 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "8"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 907668 907804 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "9"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001365628"; +1 protein_coding CDS 907668 907804 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "9"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 908241 908390 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "10"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001386720"; +1 protein_coding CDS 908241 908390 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "10"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 908566 908706 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "11"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001377573"; +1 protein_coding CDS 908566 908706 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "11"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 908880 909020 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "12"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001371278"; +1 protein_coding CDS 908880 909020 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "12"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 909213 909431 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "13"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001371226"; +1 protein_coding CDS 909213 909431 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "13"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 909696 909744 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "14"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00001370044"; +1 protein_coding CDS 909696 909744 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "14"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding exon 909822 910388 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "15"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; exon_id "ENSE00002275645"; +1 protein_coding CDS 909822 909952 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "15"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; protein_id "ENSP00000368719"; +1 protein_coding stop_codon 909953 909955 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; exon_number "15"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; +1 protein_coding UTR 901882 901911 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; +1 protein_coding UTR 909956 910388 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379409"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-005"; transcript_source "ensembl_havana"; +1 protein_coding transcript 901882 910388 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; +1 protein_coding exon 901882 901994 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00002268161"; +1 protein_coding CDS 901912 901994 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding start_codon 901912 901914 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "1"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; +1 protein_coding exon 902084 902183 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "2"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001364180"; +1 protein_coding CDS 902084 902183 . + 1 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "2"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 905657 905803 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "3"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001373621"; +1 protein_coding CDS 905657 905803 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "3"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 905901 905981 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "4"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001374286"; +1 protein_coding CDS 905901 905981 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "4"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 906066 906138 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "5"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001385460"; +1 protein_coding CDS 906066 906138 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "5"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 906259 906386 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "6"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001374990"; +1 protein_coding CDS 906259 906386 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "6"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 906457 906588 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "7"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00003549084"; +1 protein_coding CDS 906457 906588 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "7"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 906704 906784 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "8"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001380204"; +1 protein_coding CDS 906704 906784 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "8"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 907455 907530 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "9"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001375540"; +1 protein_coding CDS 907455 907530 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "9"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 907668 907804 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "10"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001365628"; +1 protein_coding CDS 907668 907804 . + 2 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "10"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; +1 protein_coding exon 908241 908390 . + . gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "11"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; exon_id "ENSE00001386720"; +1 protein_coding CDS 908241 908390 . + 0 gene_id "ENSG00000187583"; transcript_id "ENST00000379407"; exon_number "11"; gene_name "PLEKHN1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PLEKHN1-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS53256"; protein_id "ENSP00000368717"; diff -r aa9579837a2e -r 7c7a2a381dfe test-data/input.Homo_sapiens.GRCh37-chr1-f10k.75.gtf.granges.rds Binary file test-data/input.Homo_sapiens.GRCh37-chr1-f10k.75.gtf.granges.rds has changed diff -r aa9579837a2e -r 7c7a2a381dfe test-data/input.TIA1.bed.RCAS.report.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.TIA1.bed.RCAS.report.html Thu Jun 21 15:07:13 2018 -0400 @@ -0,0 +1,5510 @@ + + + + + + + + + + + + + + +The RNA Centric Analysis System Report + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+ + + + + + + + + + + + + + +

+ +

+ + + + + + + +

1 Introduction

RCAS is an automated system that provides dynamic genome annotations for custom input files that contain transcriptomic regions. Such transcriptomic regions could be, for instance, peak regions detected by CLIP-Seq analysis that detect protein-RNA interactions, RNA modifications (alias the epitranscriptome), CAGE-tag locations, or any other collection of target regions at the level of the transcriptome.

2 Input Settings

+ + +

3 Annotation Summary for Query Regions

3.1 Distribution of query regions across gene features

Figure 1 : The number of query regions that overlap different kinds of gene features are counted. The ‘y’ axis denotes the types of gene features included in the analysis and the ‘x’ axis denotes the percentage of query regions (out of total number of query regions denoted with ‘n’) that overlap at least one genomic interval that host the corresponding feature. Notice that the sum of the percentage values for different features don’t add up to 100%, because some query regions may overlap multiple kinds of features

+ + +

3.2 Interactive table of genes that overlap query regions

Table 1 : Interactive table of top 100 genes that overlap query regions, grouped by gene features such as introns, exons, UTRs, etc.

+ + +

3.3 Distribution of query regions in the genome grouped by gene types

Figure 2 : The number of query regions that overlap different kinds of gene types are counted. The ‘x’ axis denotes the types of genes included in the analysis and the ‘y’ axis denotes the percentage of query regions (out of total number of query regions denoted with ‘n’) that overlap at least one genomic interval that host the corresponding gene type. If the query regions don’t overlap any known genes, they are classified as ‘Unknown’.

+ + +

3.4 Coverage profile of query regions at/around Transcription Start/End Sites

Figure 3 : The depth of coverage of query regions at and around Transcription Start/End Sites

+ + +

3.5 Coverage profile of query regions at Exon - Intron Boundaries

Figure 4 : The depth of coverage of query regions at exon - intron junctions

+ + +

3.6 Coverage profile of query regions across the length of different gene features

Figure 5 : The query regions are overlaid with the genomic coordinates of features. Each entry corresponding to a feature is divided into 100 bins of equal length and for each bin the number of query regions that cover the corresponding bin is counted. Features shorter than 100bp are excluded. Thus, a coverage profile is obtained based on the distribution of the query regions. Mean coverage score for each bin is represented with ribbons where the thickness of the ribbon indicates the 95% confidence interval (mean +- standard error of the mean x 1.96). The strandedness of the features are taken into account. The coverage profile is plotted in the 5’ to 3’ direction.

+ + +

4 motifRG analysis results

4.1 Top motifs discovered in the sequences of the query regions

4.1.1 transcripts

4.1.2 exons

4.1.3 promoters

4.1.4 fiveUTRs

4.1.5 introns

4.1.6 cds

4.1.7 threeUTRs

5 GO Term Analysis Results

5.1 Biological Processes

Table 2 : Significant Biological Process GO terms (FDR < 0.1) enriched for genes that overlap query regions

5.2 Molecular Functions

Table 3 : Significant Molecular Function GO terms (FDR < 0.1) enriched for genes that overlap query regions

5.3 Cellular Compartments

Table 4 : Significant Cellular Compartment GO terms (FDR < 0.1) enriched for genes that overlap query regions

6 Gene Set Enrichment Analysis Results

Table 5 : Significant MSigDB Gene Sets (FDR < 0.1) enriched for genes that overlap query regions

+ + +

7 Acknowledgements

RCAS is developed in the group of Altuna Akalin (head of the Scientific Bioinformatics Platform) by Bora Uyar (Bioinformatics Scientist), Dilmurat Yusuf (Bioinformatics Scientist) and Ricardo Wurmus (System Administrator) at the Berlin Institute of Medical Systems Biology (BIMSB) at the Max-Delbrueck-Center for Molecular Medicine (MDC) in Berlin.

RCAS is developed as a bioinformatics service as part of the RNA Bioinformatics Center, which is one of the eight centers of the German Network for Bioinformatics Infrastructure (de.NBI).

8 Session Information

## R version 3.4.1 (2017-06-30)
+## Platform: x86_64-pc-linux-gnu (64-bit)
+## Running under: Ubuntu 16.04.4 LTS
+## 
+## Matrix products: default
+## BLAS: /home/uhlm/Programme/miniconda2/envs/rcas/lib/R/lib/libRblas.so
+## LAPACK: /home/uhlm/Programme/miniconda2/envs/rcas/lib/R/lib/libRlapack.so
+## 
+## locale:
+## [1] C
+## 
+## attached base packages:
+##  [1] grid      stats4    parallel  stats     graphics  grDevices utils    
+##  [8] datasets  methods   base     
+## 
+## other attached packages:
+##  [1] org.Hs.eg.db_3.5.0                bindrcpp_0.2                     
+##  [3] RCAS_1.5.4                        motifRG_1.22.0                   
+##  [5] BSgenome.Hsapiens.UCSC.hg19_1.4.0 BSgenome_1.46.0                  
+##  [7] rtracklayer_1.38.3                GenomicRanges_1.30.3             
+##  [9] GenomeInfoDb_1.14.0               seqLogo_1.44.0                   
+## [11] Biostrings_2.46.0                 XVector_0.18.0                   
+## [13] topGO_2.30.0                      SparseM_1.76                     
+## [15] GO.db_3.5.0                       AnnotationDbi_1.40.0             
+## [17] IRanges_2.12.0                    S4Vectors_0.16.0                 
+## [19] Biobase_2.38.0                    graph_1.56.0                     
+## [21] BiocGenerics_0.24.0               data.table_1.10.4                
+## [23] DT_0.4                            plotly_4.7.1                     
+## [25] ggplot2_2.2.1                    
+## 
+## loaded via a namespace (and not attached):
+##  [1] bitops_1.0-6               matrixStats_0.53.1        
+##  [3] bit64_0.9-5                RColorBrewer_1.1-2        
+##  [5] httr_1.3.1                 rprojroot_1.3-2           
+##  [7] tools_3.4.1                backports_1.1.2           
+##  [9] R6_2.2.2                   KernSmooth_2.23-15        
+## [11] DBI_1.0.0                  lazyeval_0.2.1            
+## [13] colorspace_1.3-2           seqPattern_1.10.0         
+## [15] RMySQL_0.10.13             bit_1.1-12                
+## [17] compiler_3.4.1             genomation_1.10.0         
+## [19] DelayedArray_0.4.1         labeling_0.3              
+## [21] scales_0.5.0               readr_1.1.1               
+## [23] proxy_0.4-17               pbapply_1.3-3             
+## [25] stringr_1.3.0              digest_0.6.15             
+## [27] Rsamtools_1.30.0           rmarkdown_1.9             
+## [29] pkgconfig_2.0.1            htmltools_0.3.6           
+## [31] plotrix_3.7                htmlwidgets_1.0           
+## [33] rlang_0.2.1                RSQLite_2.0               
+## [35] impute_1.52.0              shiny_1.0.5               
+## [37] bindr_0.1.1                jsonlite_1.5              
+## [39] crosstalk_1.0.0            BiocParallel_1.12.0       
+## [41] dplyr_0.7.4                RCurl_1.95-4.8            
+## [43] magrittr_1.5               GenomeInfoDbData_1.0.0    
+## [45] Matrix_1.2-14              Rcpp_0.12.15              
+## [47] munsell_0.5.0              yaml_2.1.18               
+## [49] stringi_1.1.7              SummarizedExperiment_1.8.0
+## [51] zlibbioc_1.24.0            plyr_1.8.4                
+## [53] ggseqlogo_0.1              blob_1.1.0                
+## [55] lattice_0.20-34            cowplot_0.9.2             
+## [57] GenomicFeatures_1.30.3     hms_0.3                   
+## [59] knitr_1.20                 pillar_1.2.2              
+## [61] reshape2_1.4.3             biomaRt_2.32.1            
+## [63] XML_3.98-1.6               glue_1.2.0                
+## [65] evaluate_0.10.1            httpuv_1.3.6.2            
+## [67] gtable_0.2.0               purrr_0.2.4               
+## [69] tidyr_0.8.1                assertthat_0.2.0          
+## [71] gridBase_0.4-7             mime_0.5                  
+## [73] xtable_1.8-2               viridisLite_0.3.0         
+## [75] tibble_1.4.2               pheatmap_1.0.10           
+## [77] GenomicAlignments_1.14.1   memoise_1.1.0

+ + + + +

+ +

+ + + + + + + + diff -r aa9579837a2e -r 7c7a2a381dfe test-data/motif_analysis_table.data.tsv --- a/test-data/motif_analysis_table.data.tsv Thu Apr 13 12:36:05 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -patterns scores fgHits bgHits fgSeq bgSeq ratio fgFrac bgFrac -1 ATTTTT 26 1719 412 1623 393 4.2 0.1624 0.0393 -2 TTTTTA 27.9 1864 404 1746 391 4.6 0.1747 0.0391 -3 TTTTCT 22.2 1280 296 1200 282 4.3 0.1201 0.0282 -4 TTTATT 22.3 1402 341 1280 314 4.1 0.1281 0.0314 diff -r aa9579837a2e -r 7c7a2a381dfe test-data/output.TIA1.bed.RCAS.report.html --- a/test-data/output.TIA1.bed.RCAS.report.html Thu Apr 13 12:36:05 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,530 +0,0 @@ - - - - - - - - - - - - - - - -The RNA Centric Analysis System Report - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

- - - - - - - - - - - - - - - -

- -

- - - - - - - -

1 Introduction

RCAS is designed as a reporting tool for the functional analysis of RNA-binding sites detected by high-throughput experiments. It takes as input a BED format file containing the genomic coordinates of the RNA binding sites and a GTF file that contains the genomic annotation features usually provided by publicly available databases such as Ensembl and UCSC. RCAS performs overlap operations between the genomic coordinates of the RNA binding sites and the genomic annotation features and produces in-depth annotation summaries such as the distribution of binding sites with respect to gene features (exons, introns, 5’/3’ UTR regions, exon-intron boundaries, promoter regions, and whole transcripts). Moreover, by detecting the collection of targeted transcripts, RCAS can carry out functional annotation tables for enriched gene sets (annotated by the Molecular Signatures Database) and GO terms. As one of the most important questions that arise during protein-RNA interaction analysis; RCAS has a module for detecting sequence motifs enriched in the targeted regions of the transcriptome. The final report of RCAS consists of high-quality dynamic figures and tables, which are readily applicable for publications or other academic usage.

2 Input Settings

3 Annotation Summary for Query Regions

3.1 Distribution of query regions across gene features

3.2 Interactive table of genes that overlap query regions

Table 1 : Interactive table of top 100 genes that overlap query regions, grouped by gene features such as introns, exons, UTRs, etc.

3.3 Distribution of query regions in the genome grouped by gene types

3.4 Coverage profile of query regions at/around Transcription Start/End Sites

Figure 3 : The depth of coverage of query regions at and around Transcription Start/End Sites

3.5 Coverage profile of query regions at Exon - Intron Boundaries

Figure 4 : The depth of coverage of query regions at exon - intron junctions

3.6 Coverage profile of query regions across the length of different gene features

4 motifRG analysis results

4.1 Top motifs discovered using motifRG

Figure 6 : Top motifs discovered in the sequences of the query regions

Motif 1 : Consensus: ATTTTT

Motif 2 : Consensus: TTTTTA

Motif 3 : Consensus: TTTTCT

Motif 4 : Consensus: TTTATT

4.2 motifRG motif discovery statistics

Table 2 : motifRG motif discovery statistics. fg: foreground; bg: background; hits: number of motif hits; seq: number of sequences with motifs; frac: fraction of sequences that contain the motif compared to the all sequences; ratio: ratio of foreground motif fraction versus background motif fraction

5 GO Term Analysis Results

5.1 Biological Processes

Table 3 : Significant Biological Process GO terms (FDR < 0.1) enriched for genes that overlap query regions

5.2 Molecular Functions

Table 4 : Significant Molecular Function GO terms (FDR < 0.1) enriched for genes that overlap query regions

5.3 Cellular Compartments

Table 5 : Significant Cellular Compartment GO terms (FDR < 0.1) enriched for genes that overlap query regions

6 Gene Set Enrichment Analysis Results

Table 6 : Significant MSigDB Gene Sets (FDR < 0.1) enriched for genes that overlap query regions

7 Acknowledgements

RCAS is developed as a bioinformatics service as part of the RNA Bioinformatics Center, which is one of the eight centers of the German Network for Bioinformatics Infrastructure (de.NBI).

8 Session Information

## R version 3.3.1 (2016-06-21)
-## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 16.04.2 LTS
-## 
-## locale:
-##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
-##  [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8    
-##  [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8   
-##  [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                 
-##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
-## [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       
-## 
-## attached base packages:
-##  [1] grid      stats4    parallel  stats     graphics  grDevices utils    
-##  [8] datasets  methods   base     
-## 
-## other attached packages:
-##  [1] org.Hs.eg.db_3.3.0                RCAS_1.1.1                       
-##  [3] motifRG_1.18.0                    BSgenome.Hsapiens.UCSC.hg19_1.4.0
-##  [5] BSgenome_1.42.0                   rtracklayer_1.34.1               
-##  [7] GenomicRanges_1.26.1              GenomeInfoDb_1.8.7               
-##  [9] seqLogo_1.38.0                    Biostrings_2.40.0                
-## [11] XVector_0.12.1                    topGO_2.24.0                     
-## [13] SparseM_1.7                       GO.db_3.3.0                      
-## [15] AnnotationDbi_1.36.0              IRanges_2.8.0                    
-## [17] S4Vectors_0.12.0                  Biobase_2.32.0                   
-## [19] graph_1.50.0                      BiocGenerics_0.20.0              
-## [21] data.table_1.10.0                 DT_0.2                           
-## [23] plotly_4.5.2                      ggplot2_2.2.0                    
-## 
-## loaded via a namespace (and not attached):
-##  [1] Rcpp_0.12.8                lattice_0.20-34           
-##  [3] tidyr_0.6.0                Rsamtools_1.26.1          
-##  [5] assertthat_0.1             digest_0.6.9              
-##  [7] gridBase_0.4-7             R6_2.2.0                  
-##  [9] plyr_1.8.4                 evaluate_0.10             
-## [11] RSQLite_1.0.0              httr_1.2.1                
-## [13] zlibbioc_1.18.0            GenomicFeatures_1.26.0    
-## [15] lazyeval_0.2.0             Matrix_1.2-6              
-## [17] rmarkdown_0.9.5            BiocParallel_1.6.6        
-## [19] readr_0.2.2                stringr_1.1.0             
-## [21] htmlwidgets_0.8            RCurl_1.95-4.8            
-## [23] biomaRt_2.28.0             munsell_0.4.3             
-## [25] base64enc_0.1-3            htmltools_0.3.5           
-## [27] SummarizedExperiment_1.4.0 tibble_1.2                
-## [29] matrixStats_0.51.0         XML_3.98-1.4              
-## [31] viridisLite_0.1.3          dplyr_0.5.0               
-## [33] GenomicAlignments_1.10.0   bitops_1.0-6              
-## [35] jsonlite_0.9.19            gtable_0.2.0              
-## [37] DBI_0.4-1                  formatR_1.4               
-## [39] magrittr_1.5               scales_0.4.1              
-## [41] KernSmooth_2.23-15         stringi_1.1.2             
-## [43] impute_1.46.0              reshape2_1.4.2            
-## [45] RColorBrewer_1.1-2         tools_3.3.1               
-## [47] seqPattern_1.6.0           purrr_0.2.2               
-## [49] yaml_2.1.13                plotrix_3.6-1             
-## [51] colorspace_1.3-1           genomation_1.6.0          
-## [53] knitr_1.12.3

- - - - -

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- - - - - - - - diff -r aa9579837a2e -r 7c7a2a381dfe test-data/summarizeQueryRegions.data.tsv --- a/test-data/summarizeQueryRegions.data.tsv Thu Apr 13 12:36:05 2017 -0400 +++ b/test-data/summarizeQueryRegions.data.tsv Thu Jun 21 15:07:13 2018 -0400 @@ -6,3 +6,4 @@ introns 6 0.1 cds 3 0 threeUTRs 12 0.1 +NoFeatures 9977 99.8 diff -r aa9579837a2e -r 7c7a2a381dfe test-data/test2_multi_set_analysis_report.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test2_multi_set_analysis_report.html Thu Jun 21 15:07:13 2018 -0400 @@ -0,0 +1,3552 @@ + + + + + + + + + + + + + + +The RNA Centric Analysis System Report + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+ + + + + + + + + + + + + + +

+ +

+ + + + + + + +

1 Distance of samples by various metrics

1.1 Jaccard distance based on shared target genes

Figure 1 : Jaccard distance based on shared target genes. Here we plot the distance matrix between samples based on the Jaccard index computed for each pairwise sample based on how many genes the compared pair of samples co-overlap.

1.2 Clustering of samples based on overlaps with transcript features

Figure 2 : Clustering of samples based on overlaps with transcript features

2 Motif Discovery

Figure 3 : Feature specific motifs discovered for each sample

3 Feature Boundary Coverage Profiles

3.1 Smoothed line plots

Figure 4 : Feature boundary coverage profiles for each sample

+ + +

3.2 PCA plots

3.2.1 transcripts

3.2.2 exons

3.2.3 promoters

3.2.4 fiveUTRs

3.2.5 introns

3.2.6 cds

3.2.7 threeUTRs

4 Acknowledgements

RCAS is developed as a bioinformatics service as part of the RNA Bioinformatics Center, which is one of the eight centers of the German Network for Bioinformatics Infrastructure (de.NBI).

5 Session Information

## R version 3.4.1 (2017-06-30)
+## Platform: x86_64-pc-linux-gnu (64-bit)
+## Running under: Ubuntu 16.04.4 LTS
+## 
+## Matrix products: default
+## BLAS: /home/uhlm/Programme/miniconda2/envs/rcas/lib/R/lib/libRblas.so
+## LAPACK: /home/uhlm/Programme/miniconda2/envs/rcas/lib/R/lib/libRlapack.so
+## 
+## locale:
+## [1] C
+## 
+## attached base packages:
+##  [1] grid      stats4    parallel  stats     graphics  grDevices utils    
+##  [8] datasets  methods   base     
+## 
+## other attached packages:
+##  [1] RCAS_1.5.4                        motifRG_1.22.0                   
+##  [3] BSgenome.Hsapiens.UCSC.hg19_1.4.0 BSgenome_1.46.0                  
+##  [5] rtracklayer_1.38.3                GenomicRanges_1.30.3             
+##  [7] GenomeInfoDb_1.14.0               seqLogo_1.44.0                   
+##  [9] Biostrings_2.46.0                 XVector_0.18.0                   
+## [11] topGO_2.30.0                      SparseM_1.76                     
+## [13] GO.db_3.5.0                       AnnotationDbi_1.40.0             
+## [15] IRanges_2.12.0                    S4Vectors_0.16.0                 
+## [17] Biobase_2.38.0                    graph_1.56.0                     
+## [19] BiocGenerics_0.24.0               data.table_1.10.4                
+## [21] DT_0.4                            plotly_4.7.1                     
+## [23] ggplot2_2.2.1                    
+## 
+## loaded via a namespace (and not attached):
+##  [1] nlme_3.1-137               bitops_1.0-6              
+##  [3] matrixStats_0.53.1         bit64_0.9-5               
+##  [5] RColorBrewer_1.1-2         httr_1.3.1                
+##  [7] rprojroot_1.3-2            tools_3.4.1               
+##  [9] backports_1.1.2            R6_2.2.2                  
+## [11] KernSmooth_2.23-15         mgcv_1.8-23               
+## [13] DBI_1.0.0                  lazyeval_0.2.1            
+## [15] colorspace_1.3-2           seqPattern_1.10.0         
+## [17] tidyselect_0.2.4           RMySQL_0.10.13            
+## [19] bit_1.1-12                 compiler_3.4.1            
+## [21] genomation_1.10.0          DelayedArray_0.4.1        
+## [23] labeling_0.3               scales_0.5.0              
+## [25] readr_1.1.1                proxy_0.4-17              
+## [27] pbapply_1.3-3              stringr_1.3.0             
+## [29] digest_0.6.15              Rsamtools_1.30.0          
+## [31] rmarkdown_1.9              pkgconfig_2.0.1           
+## [33] htmltools_0.3.6            plotrix_3.7               
+## [35] htmlwidgets_1.0            rlang_0.2.1               
+## [37] RSQLite_2.0                impute_1.52.0             
+## [39] shiny_1.0.5                bindr_0.1.1               
+## [41] jsonlite_1.5               crosstalk_1.0.0           
+## [43] BiocParallel_1.12.0        dplyr_0.7.4               
+## [45] RCurl_1.95-4.8             magrittr_1.5              
+## [47] GenomeInfoDbData_1.0.0     Matrix_1.2-14             
+## [49] Rcpp_0.12.15               munsell_0.5.0             
+## [51] yaml_2.1.18                stringi_1.1.7             
+## [53] SummarizedExperiment_1.8.0 zlibbioc_1.24.0           
+## [55] org.Hs.eg.db_3.5.0         plyr_1.8.4                
+## [57] ggseqlogo_0.1              blob_1.1.0                
+## [59] lattice_0.20-34            cowplot_0.9.2             
+## [61] GenomicFeatures_1.30.3     hms_0.3                   
+## [63] knitr_1.20                 pillar_1.2.2              
+## [65] reshape2_1.4.3             biomaRt_2.32.1            
+## [67] XML_3.98-1.6               glue_1.2.0                
+## [69] evaluate_0.10.1            httpuv_1.3.6.2            
+## [71] gtable_0.2.0               purrr_0.2.4               
+## [73] tidyr_0.8.1                assertthat_0.2.0          
+## [75] gridBase_0.4-7             mime_0.5                  
+## [77] xtable_1.8-2               viridisLite_0.3.0         
+## [79] tibble_1.4.2               pheatmap_1.0.10           
+## [81] GenomicAlignments_1.14.1   memoise_1.1.0             
+## [83] bindrcpp_0.2

+ + + + +

+ +

+ + + + + + + +

The RNA Centric Analysis System Report

Bora Uyar, Dilmurat Yusuf, Ricardo Wurmus, Altuna Akalin

2018-06-19 16:01:11

1 Introduction

2 Input Settings

3 Annotation Summary for Query Regions

3.1 Distribution of query regions across gene features

3.2 Interactive table of genes that overlap query regions

3.3 Distribution of query regions in the genome grouped by gene types

3.4 Coverage profile of query regions at/around Transcription Start/End Sites

3.5 Coverage profile of query regions at Exon - Intron Boundaries

3.6 Coverage profile of query regions across the length of different gene features

4 motifRG analysis results

4.1 Top motifs discovered in the sequences of the query regions

4.1.1 transcripts

4.1.2 exons

4.1.3 promoters

4.1.4 fiveUTRs

4.1.5 introns

4.1.6 cds

4.1.7 threeUTRs

5 GO Term Analysis Results

5.1 Biological Processes

5.2 Molecular Functions

5.3 Cellular Compartments

6 Gene Set Enrichment Analysis Results

7 Acknowledgements

8 Session Information

The RNA Centric Analysis System Report

Bora Uyar, Dilmurat Yusuf, Ricardo Wurmus, Altuna Akalin

2017-04-07

1 Introduction

2 Input Settings

3 Annotation Summary for Query Regions

3.1 Distribution of query regions across gene features

3.2 Interactive table of genes that overlap query regions

3.3 Distribution of query regions in the genome grouped by gene types

3.4 Coverage profile of query regions at/around Transcription Start/End Sites

3.5 Coverage profile of query regions at Exon - Intron Boundaries

3.6 Coverage profile of query regions across the length of different gene features

4 motifRG analysis results

4.1 Top motifs discovered using motifRG

4.2 motifRG motif discovery statistics

5 GO Term Analysis Results

5.1 Biological Processes

5.2 Molecular Functions

5.3 Cellular Compartments

6 Gene Set Enrichment Analysis Results

7 Acknowledgements

8 Session Information

The RNA Centric Analysis System Report

Bora Uyar, Ricardo Wurmus, Altuna Akalin

2018-06-21 16:43:01

1 Distance of samples by various metrics

1.1 Jaccard distance based on shared target genes

1.2 Clustering of samples based on overlaps with transcript features

2 Motif Discovery

3 Feature Boundary Coverage Profiles

3.1 Smoothed line plots

3.2 PCA plots

3.2.1 transcripts

3.2.2 exons

3.2.3 promoters

3.2.4 fiveUTRs

3.2.5 introns

3.2.6 cds

3.2.7 threeUTRs

4 Acknowledgements

5 Session Information