Mercurial > repos > rnateam > ribotaper

comparison ribotaper_part2_create_metaplots.xml @ 2:9dda0cc9ff98 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper/ commit 9a59864f0bfb9937309d2c18b8cf3715c8067808
author rnateam
date Wed, 30 Nov 2016 16:57:07 -0500
parents a56343c142d5
children 579b3be2559f
comparison
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1:a56343c142d5 2:9dda0cc9ff98
29 <inputs> 29 <inputs>
30 <param name="ribo_bam" type="data" format="bam" label="ribo_bam" help="Ribo-seq alignment file in BAM format."/> 30 <param name="ribo_bam" type="data" format="bam" label="ribo_bam" help="Ribo-seq alignment file in BAM format."/>
31 <param name="start_stops_FAR" type="data" format="bed" label="start_stops_FAR" help="Please run 'ribotaper part 1' to generate the table."/> 31 <param name="start_stops_FAR" type="data" format="bed" label="start_stops_FAR" help="Please run 'ribotaper part 1' to generate the table."/>
32 </inputs> 32 </inputs>
33 <outputs> 33 <outputs>
34 <data name="output1" type="data" format="pdf" from_work_dir="merged_metagene.pdf" label="Metagene analysis results for P-sites definition (figures)"/> 34 <data name="output1" format="pdf" from_work_dir="merged_metagene.pdf" label="Metagene analysis results for P-sites definition (figures)"/>
35 <data name="output2" type="data" format="tabular" from_work_dir="metagene" label="Metagene analysis results for P-sites definition (table)"/> 35 <data name="output2" format="tabular" from_work_dir="metagene" label="Metagene analysis results for P-sites definition (table)"/>
36 </outputs> 36 </outputs>
37 <tests> 37 <tests>
38 <test> 38 <test>
39 <param name="ribo_bam" value="test_ribo.bam" ftype="bam"/> 39 <param name="ribo_bam" value="test_ribo.bam" ftype="bam"/>
40 <param name="start_stops_FAR" value="annotation_path/start_stops_FAR.bed" ftype="bed"/> 40 <param name="start_stops_FAR" value="annotation_path/start_stops_FAR.bed" ftype="bed"/>