Mercurial > repos > rnateam > ribotaper
comparison ribotaper_part2_create_metaplots.xml @ 2:9dda0cc9ff98 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper/ commit 9a59864f0bfb9937309d2c18b8cf3715c8067808
author | rnateam |
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date | Wed, 30 Nov 2016 16:57:07 -0500 |
parents | a56343c142d5 |
children | 579b3be2559f |
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1:a56343c142d5 | 2:9dda0cc9ff98 |
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29 <inputs> | 29 <inputs> |
30 <param name="ribo_bam" type="data" format="bam" label="ribo_bam" help="Ribo-seq alignment file in BAM format."/> | 30 <param name="ribo_bam" type="data" format="bam" label="ribo_bam" help="Ribo-seq alignment file in BAM format."/> |
31 <param name="start_stops_FAR" type="data" format="bed" label="start_stops_FAR" help="Please run 'ribotaper part 1' to generate the table."/> | 31 <param name="start_stops_FAR" type="data" format="bed" label="start_stops_FAR" help="Please run 'ribotaper part 1' to generate the table."/> |
32 </inputs> | 32 </inputs> |
33 <outputs> | 33 <outputs> |
34 <data name="output1" type="data" format="pdf" from_work_dir="merged_metagene.pdf" label="Metagene analysis results for P-sites definition (figures)"/> | 34 <data name="output1" format="pdf" from_work_dir="merged_metagene.pdf" label="Metagene analysis results for P-sites definition (figures)"/> |
35 <data name="output2" type="data" format="tabular" from_work_dir="metagene" label="Metagene analysis results for P-sites definition (table)"/> | 35 <data name="output2" format="tabular" from_work_dir="metagene" label="Metagene analysis results for P-sites definition (table)"/> |
36 </outputs> | 36 </outputs> |
37 <tests> | 37 <tests> |
38 <test> | 38 <test> |
39 <param name="ribo_bam" value="test_ribo.bam" ftype="bam"/> | 39 <param name="ribo_bam" value="test_ribo.bam" ftype="bam"/> |
40 <param name="start_stops_FAR" value="annotation_path/start_stops_FAR.bed" ftype="bed"/> | 40 <param name="start_stops_FAR" value="annotation_path/start_stops_FAR.bed" ftype="bed"/> |