diff ribotaper_part1_create_annotation_files.xml @ 1:a56343c142d5 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper/ commit 8e6fdb45c70ba778280df5b222036f3b5c604cdf
author rnateam
date Tue, 29 Nov 2016 14:33:00 -0500
parents 93b90466d533
children 9dda0cc9ff98
line wrap: on
line diff
--- a/ribotaper_part1_create_annotation_files.xml	Tue Jun 07 17:49:46 2016 -0400
+++ b/ribotaper_part1_create_annotation_files.xml	Tue Nov 29 14:33:00 2016 -0500
@@ -1,6 +1,6 @@
 <tool id="ribotaper_create_annotation" name="ribotaper part 1: creation of annotation files" version="0.1.0">
     <requirements>
-            <requirement type="package" version="1.3.1">ribotaper</requirement>
+            <requirement type="package" version="1.3.1a">ribotaper</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
@@ -13,9 +13,7 @@
             "$ccdsid"
             "$appris"
             "annotation_path"
-
         &&
-
         tar
             "czvf"
             "$output2"
@@ -37,7 +35,7 @@
     </inputs>
     <outputs>
         <data name="output1" type="data" format="bed" from_work_dir="annotation_path/start_stops_FAR.bed" label="start_stops_FAR"/>
-        <data name="output2" type="data" format="compressed_archive" label="annotation_path"/>
+        <data name="output2" type="data" format="zip" label="annotation_path"/>
     </outputs>
     <tests>
         <test>
@@ -81,12 +79,14 @@
 ``Ribotaper part 1`` generates two files:
 
   - **start_stops_FAR** in BED format
-  - **annotation_path**  in format of compressed archive
+  - **annotation_path**  in format of zip
 
 *Start_stops_FAR*
 is used as an input for ``ribotaper part 2``.
 *Annotation_path*
 is used as an input for ``ribotaper part 3``.
+
+
 ]]></help>
     <citations>
         <citation type="doi">10.1038/nmeth.3688</citation>