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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper/ commit 8e6fdb45c70ba778280df5b222036f3b5c604cdf
author rnateam
date Tue, 29 Nov 2016 14:33:00 -0500
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Important notes
----------------

- At least 2 cores should be used for running ``ribotaper part 3: ribosome profiling``,  therefore please configure **job_conf.xml** accordingly.

- We ran the RiboTaper analysis on an SGE cluster, using 7 cores and h_vmem 8G. For each dataset, the complete RiboTaper workflow (from the bam files to final results) took ~ 1 day.

- The current RiboTaper framework is not designed to identify and quantify ORFs on different transcripts. This means the transcript annotation is crucial.

- Be careful about using scaffolds, both in the genome and GTF files, which may slow the whole pipeline.