Mercurial > repos > rnateam > rnacommender

comparison main.py @ 4:a609d6dc8047 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/rna_commander/tools/rna_tools/rna_commender commit 7ad344d108076116e702e1c1e91cea73d8fcadc4
author rnateam
date Thu, 28 Jul 2016 05:55:25 -0400
parents 8918de535391
children b3462a72ff76
comparison
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3:ecf125a1ad73 4:a609d6dc8047
5 import sys 5 import sys
6 from rbpfeatures import RBPVectorizer 6 from rbpfeatures import RBPVectorizer
7 from data import PredictDataset 7 from data import PredictDataset
8 from recommend import Predictor 8 from recommend import Predictor
9 9
10 from theano import config
11
12 __author__ = "Gianluca Corrado" 10 __author__ = "Gianluca Corrado"
13 __copyright__ = "Copyright 2016, Gianluca Corrado" 11 __copyright__ = "Copyright 2016, Gianluca Corrado"
14 __license__ = "MIT" 12 __license__ = "MIT"
15 __maintainer__ = "Gianluca Corrado" 13 __maintainer__ = "Gianluca Corrado"
16 __email__ = "gianluca.corrado@unitn.it" 14 __email__ = "gianluca.corrado@unitn.it"
17 __status__ = "Production" 15 __status__ = "Production"
18 16
19 config.floatX = 'float32'
20 17
21 if __name__ == '__main__': 18 if __name__ == '__main__':
22 parser = argparse.ArgumentParser( 19 parser = argparse.ArgumentParser(
23 description=__doc__, 20 description=__doc__,
24 formatter_class=argparse.ArgumentDefaultsHelpFormatter) 21 formatter_class=argparse.ArgumentDefaultsHelpFormatter)
44 trained_model=model, 41 trained_model=model,
45 serendipity_dic=model + '_', 42 serendipity_dic=model + '_',
46 output="output.txt") 43 output="output.txt")
47 P.predict() 44 P.predict()
48 else: 45 else:
49 sys.exit("""The queried protein has no domain similarity with the proteins in the training dataset. It cannot be predicted.""") 46 sys.stdout.write("""
47 The queried protein has no domain similarity with the proteins in the training dataset. It cannot be predicted.
48 """)