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comparison rnacommender.xml @ 4:a609d6dc8047 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/rna_commander/tools/rna_tools/rna_commender commit 7ad344d108076116e702e1c1e91cea73d8fcadc4
author rnateam
date Thu, 28 Jul 2016 05:55:25 -0400
parents ecf125a1ad73
children b3462a72ff76
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3:ecf125a1ad73 4:a609d6dc8047
1 <tool id="rbc_rnacommender" name="RNAcommender" version="0.1.1"> 1 <tool id="rbc_rnacommender" name="RNAcommender" version="0.1.1">
2 <description>files into a collection</description> 2 <description>genome-wide recommendation of RNA-protein interactions</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.5">sam</requirement> 4 <requirement type="package" version="3.5">sam</requirement>
5 <requirement type="package" version="1.11.1">numpy</requirement> 5 <requirement type="package" version="1.11.1">numpy</requirement>
6 <requirement type="package" version="0.17.1">scipy</requirement>
6 <requirement type="package" version="0.18.1">pandas</requirement> 7 <requirement type="package" version="0.18.1">pandas</requirement>
7 <requirement type="package" version="3.2.2">pytables</requirement> 8 <requirement type="package" version="3.2.2">pytables</requirement>
8 <requirement type="package" version="0.7.2">theano</requirement> 9 <requirement type="package" version="0.8.2">theano</requirement>
9 <requirement type="package" version="2.10.0">requests</requirement> 10 <requirement type="package" version="2.10.0">requests</requirement>
10 </requirements> 11 </requirements>
11 <command detect_errors="aggressive"> 12 <command detect_errors="aggressive">
12 <![CDATA[ 13 <![CDATA[
13 sh $__tool_directory__/init.sh && 14 sh $__tool_directory__/init.sh 2> hide.txt &&
14 python $__tool_directory__/main.py "$infile" 15 THEANO_FLAGS=base_compiledir=./tmp python $__tool_directory__/main.py "$infile"
15 ]]></command> 16 ]]></command>
16 <inputs> 17 <inputs>
17 <param name="infile" type="data" format="fasta" label="Fasta file to split"/> 18 <param name="infile" type="data" format="fasta" label="Fasta file containing (exactly) one RBP sequence"/>
18 </inputs> 19 </inputs>
19 <outputs> 20 <outputs>
20 <data format="tabular" from_work_dir="output.txt" name="outfile" /> 21 <data format="tabular" from_work_dir="output.txt" name="outfile" />
21 </outputs> 22 </outputs>
22 <tests> 23 <tests>