Mercurial > repos > rnateam > segemehl
diff test-data/testmap.sam @ 4:db367d012fa3 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/segemehl commit b193689f9f30ce65a77be2d2c00929e3335a7d82
| author | bgruening |
|---|---|
| date | Wed, 26 Jul 2017 15:32:09 -0400 |
| parents | 039547ad8fb8 |
| children |
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--- a/test-data/testmap.sam Fri Dec 16 07:37:24 2016 -0500 +++ b/test-data/testmap.sam Wed Jul 26 15:32:09 2017 -0400 @@ -1,9 +1,7 @@ @HD VN:1.0 @SQ SN:TestChromosomeForGalaxy LN:3459 -@PG ID:segemehl VN:0.2.0-$Rev: 418 $ ($Date: 2015-01-05 05:17:35 -0500 (Mon, 05 Jan 2015) $) CL:segemehl.x -i chr1.idx -d chr1.fa -q test.fastq -S -m 12 -A 85 -H 1 --minsplicecover 80 --minfragscore 18 --minfraglen 20 --splicescorescale 1.0 +@PG ID:segemehl VN:0.2.0-$Rev: 418 $ ($Date: 2015-01-05 05:17:35 -0500 (Mon, 05 Jan 2015) $) CL:segemehl.x -t 2 -d test-data/chr1.fa -i test-data/chr1.idx -q test-data/test.fastq -m 12 -A 85 -H 1 -M 100 -E 5.0 -D 1 -s -o testout.sam 10.516 HWI-EAS100R:1:1:550:1622/1 0 TestChromosomeForGalaxy 182 255 70M * 0 0 CATGTACTGTTAAAGCGTGCGTTTATTTCAAACATTAATGAAATTTGCAGAACCCAAACTAAAGAGAGAG 3MIa!,$)8EA)!1>tMJ{:2WrL`s|`gg{]'0+Op!6RxNw;V)XKV#Go5}b!`_V]A?!F>{LM(z NM:i:0 MD:Z:70 NH:i:1 XI:i:0 XA:Z:Q 10.2869 HWI-EAS100R:1:1:1698:585/1 0 TestChromosomeForGalaxy 661 255 70M * 0 0 AACCATGCATAAAAGGGGTTCGCCGTTCTCGGAGAGCCACAGAGCCCGGGCCACAGGCAGCTCCTTGCCA Q-a;@)*!F]Za^4!P*B?&!!No!^76b+X[6eOgr1$3:-Ywg;!Vzj!`=+e>YV|ok_z!D<2+jx NM:i:0 MD:Z:70 NH:i:1 XI:i:0 XA:Z:Q 10.2085 HWI-EAS100R:1:1:32:109/2 0 TestChromosomeForGalaxy 1021 255 70M * 0 0 GGGAATTCACCTCAAGAACATCCAAAGTGTGAAGGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGAA V:e@~!I\GQ>>]?)-qpe!nVI4IJ+4!wE{YoSsVrr~P;PnY/.!a;~!S"n+J#St-g!lQdGA9; NM:i:0 MD:Z:70 NH:i:1 XI:i:0 XA:Z:Q -10.2869 HWI-EAS100R:1:1:1698:585/2 0 TestChromosomeForGalaxy 1321 255 43M * 0 0 CGACTGGAGCTGTTGGTCAGAAATACTGGCGTCTGCCCCCTAA btOb!D1"=hSm"'G_#I{b!!l#6JQ&iq4A`F%Uug!x!'h NM:i:0 MD:Z:43 NH:i:1 XI:i:0 XL:i:2 XA:Z:Q XX:i:1 XY:i:43 XQ:i:0 XC:Z:TestChromosomeForGalaxy XV:i:2123 XT:i:32 -10.2869 HWI-EAS100R:1:1:1698:585/2 0 TestChromosomeForGalaxy 2123 255 27M * 0 0 TGGCAAATCCAACTGACCAGAAGGAAG 7o<%qCKQEtM)!bP>!."DvsX9T}= NM:i:0 MD:Z:27 NH:i:1 XI:i:0 XL:i:2 XA:Z:Q XX:i:44 XY:i:70 XQ:i:1 XP:Z:TestChromosomeForGalaxy XU:i:1363 XS:i:64 10.516 HWI-EAS100R:1:1:550:1623/1 0 TestChromosomeForGalaxy 182 255 70M * 0 0 CATGTACTGTTAAAGCGTGCGTTTATTTCAAACATTAATGAAATTTGCAGAACCCAAACTAAAGAGAGAG 3MIa!,$)8EA)!1>tMJ{:2WrL`s|`gg{]'0+Op!6RxNw;V)XKV#Go5}b!`_V]A?!F>{LM(z NM:i:0 MD:Z:70 NH:i:1 XI:i:0 XA:Z:Q