changeset 0:48fc2c21fe1c draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/selectsequencesfrommsa commit c4bbc5b1d62a640a80681d7d467aee9eff4aa17f-dirty
author rnateam
date Sat, 11 Mar 2017 16:59:55 -0500
parents
children 876c70c6ecad
files selectsequencesfrommsa.xml test-data/result.clustal test-data/result.selected
diffstat 3 files changed, 2878 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/selectsequencesfrommsa.xml	Sat Mar 11 16:59:55 2017 -0500
@@ -0,0 +1,62 @@
+<tool id="selectsequencesfrommsa" name="Select Sequences" version="1.0.2">
+  <description>
+    Tool to select representative sequences from a multiple sequence alignment.
+  </description>
+  <requirements>
+    <requirement type="package" version="1.0.2">selectsequencesfrommsa</requirement>
+  </requirements>
+  <command detect_errors="aggressive"><![CDATA[
+    SelectSequencesFromMSA
+      -c '$input_clustal'
+      $x
+      -o `pwd`
+      -n $n
+      -i $i
+      -m $m
+      > warnings
+    ]]>
+  </command>
+  <inputs>
+    <param name="input_clustal" type="data" format="clustal" label="Input clustal alignment"/>
+    <param argument="-n" type="integer" value="6" min="1" label="Number of sequences in the output alignment." help=""/>
+    <param argument="-i" type="float" value="80" min="0.1" label="Optimize for this percentage of mean pairwise identity" help=""/>
+    <param argument="-m" type="float" value="95" min="0.1" label="Sequences with a higher percentage of pairwise identity will be removed." help=""/>
+    <param argument="-x" truevalue="-x" falsevalue="" checked="True" type="boolean" label="The first sequence (=reference sequence) is always present in the output alignment." help=""/>
+  </inputs>
+  <outputs>
+    <data format="clustal" name="clustal" from_work_dir="result.selected" label="Clustal alignment of selected sequences"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input_clustal" value="result.clustal"/>
+      <output name="result.selected" file="result.selected"/>
+    </test>
+  </tests>
+  <help>
+    
+<![CDATA[
+             
+**What it does**
+
+Tool to select representative sequences from a multiple sequence alignment in clustal format.
+Useful before running RNAz, RNAcode, RNAalifold on alignments with many entries.
+
+**Input**
+Multiple sequence alignment in clustal format
+
+**Options**
+-n Number of sequences in the output alignment. (Default: 6)
+-i Optimize for this percentage of mean pairwise identity (Default: 80)
+-m Sequences with a higher percentage of pairwise identity will be removed (Default: 95)
+-x The first sequence (=reference sequence) is always present in the output alignment per default. Default: True
+
+**Output**
+Clustal alignment with selected sequences
+
+]]>
+
+  </help>
+  <citations>
+    <citation type="doi">10.1093/nar/gkw558</citation>
+  </citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/result.clustal	Sat Mar 11 16:59:55 2017 -0500
@@ -0,0 +1,2797 @@
+CLUSTAL 2.1 multiple sequence alignment
+
+AB001721.1/2735-2851            .CC.CGGUGACU..AU.AGA.GAG.A.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP006694.1|:152734-152851    uCC.CGGUGACU..AU.AGA.GAG.A.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|526641887:1-118              uCC.UGGUGAUU..AU.GGA.GAG.A.AGG.CC.AUAC.CCGU..U.C.CCAUUCCGAAC
+gi|216762:421-538               uCC.UGGUGAUU..AU.GGA.GAG.A.AGG.CC.AUAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192414:1-117              .UC.UGUGCGCA..AU.AGA.GCA.A.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|216767:249-367               .UGcUGGCGCCA..AU.AGA.GAG.G.GUG.AU.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|507148580:1-114              .CC.CGGUGGCC..AU.AGC.AGA.G.UGG.AU.AUAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192347:1-113              .CC.CGGUGGCC..AC.AGC.AGG.G.UGG.AC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991762:1-111              .CC.UGGUGGUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gi|452192371:1-112              .CC.CGGUGGUC..AU.AGC.AGA.G.UGG.UC.AUAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192196:1-116              .CU.UGGUGACU..AU.AGU.GGA.G.GUG.UU.ACAC.CUGU..U.C.CCAUUCCGAAC
+gi|452192221:1-115              .--.CGGUGACC..AU.AGA.GAA.A.GUG.AU.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|507148498:1-116              .-U.CGGUGACC..AC.AGA.GAA.A.GUG.AU.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|507148564:1-107              .--.-GGUGGUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gb|KU291355.1|:36-147           .CC.UGGUGGUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gb|CP002873.1|:2145056-2145173  uUU.CGGUGACC..AU.AGA.GAA.A.GUG.AU.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP006647.2|:c434557-434446   .CC.UGGUGAUU..GA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gi|507148596:1-116              .CC.UGGUGACA..AU.CGCgGAG.G.GGG.UC.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|451992005:1-111              .CC.UGGUGAUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gb|CP004267.1|:c439103-438992   .CC.UGGUGAUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gb|CP007564.1|:466414-466525    .CC.UGGUGGUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gi|452192501:1-108              .--.UGGUGGUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gi|452192103:1-116              .-U.CGGUGACC..AU.AGA.GAA.A.GUG.AU.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991616:1-110              .-C.AGGUGGCC..AU.AGU.GGA.G.AGG.UA.AUAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP005745.1|:c431115-431004   .CC.UGGUGAUU..CA.AGA.AAA.G.AGG.AA.ACAC.CUGU..C.A.UCAUUCCGAAC
+gb|CP005829.1|:c428563-428452   .CC.UGGUGAUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gb|CP000049.1|:c435752-435641   cCC.UGGUGAUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gb|CP005851.1|:481735-481846    .CC.UGGUGAUU..GA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gi|526641892:1-111              .CC.UGGUGGUU..AA.AGA.AAA.G.AGG.AA.ACAC.CUGU..U.A.UCAUUCCGAAC
+gi|4468110:2-116                .CC.UGAUGACC..AU.AGC.GAG.U.UGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|CP015136.1|:656498-656615    .CC.CGGUGGCC..AU.AGG.GGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP013099.1|:3650031-3650144  .-C.UGGCGGCA..AU.AGC.GAG.U.UGG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP013066.1|:1198376-1198490  .-C.UGGUGCCU..UU.AGC.GGC.G.GGG.UC.ACAC.CUGU..U.C.CCAUCUCGAAC
+gb|CP011214.1|:386649-386764    .-U.UGGUGACU..UG.AGC.GCG.G.UGG.AA.CCAC.CUGA..U.U.CCAUUCCGAAC
+gi|38938:2-120                  .UA.CGGCGGUG..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|CP009217.2|:1265876-1265989  .CU.UGGUGAUU..AU.AGC.ACA.G.GUG.AC.ACAC.CCGA..C.C.CCAUACCGAAC
+gb|CP012154.1|:245759-245875    .CC.UGGUGGCA..AU.AGC.GGC.G.UGG.AA.CCAC.CCGA..C.C.CCAUCUCGAAC
+gb|CP003801.1|:c1381757-1381640 .UG.UGGCGGUC..AU.AGC.GGA.G.UGA.AA.AAAC.CCGA..U.C.CCAUUUCGAAC
+gi|662020025:1-116              .CC.UGGCGGCC..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..U.C.CCAUGCCGAAC
+gb|CP011213.1|:c135211-135096   .-U.UGGUGCUU..-U.AAC.GUG.G.UGG.GU.ACAC.CUCU..U.C.CCAUUCCGAAC
+gb|CP007706.1|:54289-54406      .CC.UGGUGGUU..AU.GGC.GGA.G.CGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|610510261:c2632714-2632599   .CU.CGGUGAUU..AU.UGC.GAG.G.AGC.CU.AAAC.CCGA..U.C.CCAUCCCGAAC
+gb|KT962112.1|:5558-5674        .CC.UGGUGGUU..AU.GGC.GGG.G.CGG.CC.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|743966687:c3299323-3299206   .CC.UGGUGAUU..AU.UGC.GGA.G.UGC.CC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gb|M59337.1|STMCRETO5S:2-119    .UU.CGGUGGUC..AU.AGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|507148501:1-116              .--.UGGCUAUU..AU.AGA.GAA.G.AGG.AU.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|662019993:1-109              .UU.AGGUGGCU..AU.AGC.GAC.G.GGG.CA.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|662020001:2-112              .AA.UGGUGGCU..UU.AGC.CCG.G.GUG.UU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|374855595:178928-179047      .CC.AGGUGGCCcaAC.AGC.GGC.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|662019999:2-119              .CC.UGGUGGCC..AU.GGC.GGG.GaAUG.AU.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP006911.1|:c1523003-1522887 .CU.UAGUGAUA..AU.AGC.AAG.U.GUG.AC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|662019963:1-115              .CC.UGGUGAUU..AU.GGC.GGG.G.UGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|662019989:1-117              .--.CGGUGGUU..UU.AGC.GGU.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gb|KC811143.1|:23595-23712      .UG.CGGUGGUG..AU.AGC.AAU.G.GGG.AU.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP012645.1|:c7075-6965       .AA.UGGUGGCU..AU.GUC.GCG.G.GUG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991747:2-119              .CC.UGGUGGUU..UU.AGC.GAA.G.AGC.CU.CAAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP005990.1|:c1738617-1738502 .-C.UGGCGAAA..AU.AGC.GCG.U.GGG.AA.CCAC.CCGA..U.U.CCAUUCCGAAC
+gi|485099290:1-116              .--.UGGUGAUG..AU.GGC.AUA.G.AGG.UA.ACAC.UCCU..U.C.CCAUUCCGAAC
+gi|662019941:c114-4             .--.UGGUGGCA..AU.AGC.GAG.C.GUG.UA.CCAC.CCGA..U.C.CCAUUCCGACC
+gi|452192398:1-115              .-C.GGGUGCCU..AU.ACC.GGA.G.GGG.CC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP011770.1|:130936-131052    .CU.UGGUGGCC..AU.AGC.GUU.U.GUG.AC.CCAC.CCGA..U.C.CCAUCUCGAAC
+gi|485099250:2-115              .-C.UGGUGGCU..UU.UGC.GGA.G.UGA.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP006745.1|:122093-122210    .CC.UGGUGGUU..AU.AGC.GAA.A.GCA.UU.ACAC.CCGA..U.C.CCAUCUCGAAC
+gi|662019982:1-114              .--.UGGUGGUU..AU.AGC.GAA.A.GCA.UU.ACAC.CCGA..U.C.CCAUCUCGAAC
+gb|CP006567.1|:9138975-9139093  .UU.CGGUGGUC..AU.UGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|507148531:1-114              .--.UGGUGGUC..AU.AGC.ACG.A.GUG.AA.ACAC.CUGG..C.U.CCAUUCCGAAC
+gb|JQ733906.1|:5882-5999        .GU.UGGUGAUA..GA.AGC.GGU.G.GGG.GU.ACAC.CCGG..C.U.CCAUCCCGAAC
+gb|CP003347.1|:1410592-1410706  .UA.CGGCGGCC..AC.AGC.GAC.A.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|452192107:1-117              .CU.CGGUGGCU..AU.GCC.GAG.A.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|662020015:2-117              .UC.UGGCGGCC..AU.AGC.GGG.U.UGG.UC.CCAC.GCCU..U.C.CCAUCCCGAAC
+gi|39130:3-120                  .CC.UGGUGGUC..AU.CGC.GGG.G.CGG.CU.GCAC.CCGU..U.C.CCUUUCCGAAC
+gi|451991572:2-119              .CC.UGGUGGUU..AU.CGC.GGG.G.CGG.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|258590833:c1582130-1582011   .CC.UGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192338:1-117              .UU.CGGUGGUC..AU.UGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|507148517:1-115              .GC.UGGCGACC..AU.AGC.AAG.A.GUG.AA.CCAC.CUGA..U.C.CCUUCCCGAAC
+gi|452192484:1-114              .-C.UGGUGGUU..AU.AGC.UAC.G.GGG.AA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991869:1-115              .UC.CGGUAGAG..AU.AGC.GAG.G.GAG.UC.ACAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP003308.1|:286401-286517    .CU.UGGUGGUU..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|662020024:1-117              .GA.CGGUGGCA..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|452192100:1-114              .--.UGGCGGCA..AU.GGC.GAG.U.GGG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192227:1-113              .--.UGACGACC..AU.AGC.GGU.C.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192370:1-117              .UA.CGGCGGUU..AU.GGC.GGA.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192339:1-117              .GC.CGGUGAGU..UU.ACC.GCG.A.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192326:1-113              .-C.UGGUACCU..AU.AGG.GCA.G.AGG.CC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|GU474916.1|:6228-6347        .UC.CGGUGACC..AU.AGC.AUA.G.GAG.UC.ACAC.CCGA..U.C.CCAUCUCGAAC
+gi|38747:1-116                  .GC.UGGCGACC..AU.AGC.AAG.A.GUG.AA.CCAC.CUGA..U.C.CCUUCCCGAAC
+gb|CP003639.1|:c3378511-3378397 .UC.UGGUGAUC..AU.GCC.GGA.G.GGG.UU.CCAC.CCGU..U.C.CCAUACCGAAC
+gi|485099292:1-111              .--.UGGUGCCC..AA.GGA.GGA.G.GGG.GU.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|452192337:1-117              .GC.CGGUGAAA..AU.ACC.GCG.A.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192239:1-115              .--.CGGUGACA..AU.AGC.GAG.A.GGG.AC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|330752658:19019-19129        .UA.UGGUGACU..AU.UGC.GAU.G.GUG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192169:2-119              .CC.AGGUGGUU..AU.GGC.ACA.G.GUG.CC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gi|452192109:1-111              .--.UGAUGACC..AU.AGC.AAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gb|CP009848.1|:137372-137488    .CU.UGGCGACC..AU.AGC.GUU.U.UGG.AC.CCAC.CUGA..U.C.CCAUUCCGAAC
+gi|452192272:1-117              .UC.CGGUGGCG..AA.AGA.GCG.A.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991708:2-119              .UC.UGGUGGCC..AU.ACC.GAA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991840:1-117              .GC.CGGUGAUC..AU.ACC.GCG.U.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP010552.1|:c648422-648306   .CU.UAGUGACA..AU.AGC.AAG.U.GUG.AC.CCAC.CUGA..U.C.CCAUUCCGAAC
+gb|EU081774.1|:5115-5231        .UU.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gb|CP003667.1|:1525308-1525419  .--.AGGCGGUU..AU.AGC.GGU.G.GUG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192132:1-116              .--.GGGUGCCG..AU.ACCgGAG.U.GGG.AA.ACAC.CCGG..A.U.CCAUCCCGAAC
+gi|662019923:1-112              .--.UGGCGGCC..AU.AGC.AGU.U.UGG.AC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192391:2-120              .CA.CGGCGGCC..AU.AGC.GGA.GcGGG.AA.ACGC.CCGG..A.C.CCAUCCCGAAC
+gi|757807349:c1774843-1774728   .UG.CGGUGAUC..AG.AGC.CUA.G.GUG.AG.ACGC.CCGG..U.U.CCAUUCCGAAC
+gi|507148552:1-110              .AU.GGGUGGUU..AU.AGC.AAU.G.UGG.CC.CCAC.CUCU..U.U.CCAUUCCGAAC
+gi|452192288:1-115              .CC.UGGUGGUU..AU.GGC.GGA.G.CGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gb|CP003418.1|:799889-800004    .UU.UGGUGGCU..AU.UGU.CCG.G.GUG.AA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gb|CP012075.1|:1345279-1345392  .UC.AGGUGGUU..AU.UGC.GGC.G.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991950:1-115              .--.UGGUGAUG..AU.GGC.AGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gb|M34776.1|PSERRAA:1-117       .CC.UGGUGGCU..AU.GGC.GAG.G.AGG.CC.UAAC.CCGA..U.C.CCAUCCCGAAC
+gb|M34771.1|MTBRRAB:1-117       .CC.UGGCGGCC..UG.AGC.GGU.G.UGG.AA.GAAC.CCGA..U.C.CCAUCUCGAAC
+gb|CP000655.1|:41847-41961      .CC.CGGUGACC..AU.AGC.GAA.U.UGG.AA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|330752781:c15609-15499       .UA.AGGUGGUU..AU.AGC.GAC.G.GGG.CU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|42763:130-247                .CC.UGGCGGCC..GU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|451991719:1-113              .--.UGGCGGCC..UU.AGC.GAG.G.UGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|452192242:1-115              .--.UGGUGGUU..AU.UGC.UGG.A.GGG.UC.ACAC.CCGG..U.C.UCUUUCCGAAC
+gi|451991725:1-107              .-C.CGGUGACA..AC.AGU.GCU.G.GGG.UC.CCAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP007490.1|:520317-520434    .UU.CGGCGGCC..AU.AGC.GGA.G.GGG.AA.ACGC.CUGG..U.U.ACAUUCCGAAC
+gi|452192089:1-113              .--.UGGUGAUU..AG.AGC.GGA.G.GGG.AA.ACGC.CCGU..U.C.CCAUUCCGAAC
+gi|48430:2-118                  .CC.UGGCGACC..AU.AGC.AUU.A.UGG.AC.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|212548595:c196594-196482     .CU.UGGUGGUU..AA.AAC.GUC.G.GGG.GU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192382:1-113              .CU.CGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CAGU..U.U.CCAUCCCGAAC
+gi|451991901:1-112              .--.-GGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|330752731:13671-13782        .UA.AGGUGGUU..AU.AGC.GAC.G.GGG.CU.-CAC.CUCU..U.A.CCAUUCCGAAC
+gi|507148619:1-115              .--.UGGUGGCC..AU.GGC.GGG.GaGAG.AU.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192257:1-111              .--.UGGUGGCC..AU.AGC.GAG.U.AGG.UC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991980:1-114              .UC.CGGUGGCA..AU.GGC.GGA.G.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991975:1-115              .UG.UCGUGGCU..AU.AGC.GAA.G.GGG.UC.ACAC.CUGU..U.C.CCAUACCGAAC
+gb|CP002514.1|:107806-107924    .UU.CGGUGGCC..AU.AUC.GCG.G.AGG.AC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192342:1-116              .--.CGGUGGCC..AU.AUC.GCG.G.AGG.AC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|507148613:1-117              .GA.UGGUGGUU..AU.AGC.AGC.A.AGG.GU.ACAC.CUGU..U.C.CCAUUCCGAAC
+gi|507148504:1-113              .--.UGGUGUUU..AU.AGC.AGA.G.AGG.UC.ACAC.CUGA..U.C.CCAUUCCGAAC
+gi|452192256:1-117              .UC.CGGUGGCG..AU.AGC.GUA.G.AGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148584:1-115              .CC.UGGUGGUU..AC.AGC.GGG.G.UGG.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|972621738:1141564-1141681    .CC.GGGUGCCC..AU.ACC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192217:1-116              .--.CGGUGGCC..AU.AGC.GAG.G.GGG.UC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|166157033:35720-35832        .-C.CGGUGAUG..AU.UGC.AGU.G.GAG.CU.AAAC.CUCU..U.U.CCAUUCCGAAC
+gi|662019965:1-110              .--.UGGUGAUG..AU.UGC.GGU.A.GGG.UA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gb|CP010904.1|:590328-590444    .UC.CGGUGACC..AA.AGC.GGG.G.AGG.AA.ACAC.CCGU..U.C.ACAUUCCGAAC
+gi|452192430:1-115              .CC.UGGUGAAA..UU.AGC.GCU.G.UGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP006375.1|:c1605-1492       .-C.UGGUGGUU..AU.AGC.GAG.G.UGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|507148481:2-116              .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..G.C.CCAUCCCGAAC
+gi|965596756:c1423416-1423301   .UC.UGGUGCCC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|GU568020.1|:c16851-16734     .GU.CGGUGGCU..AU.UGC.GUG.A.GGG.CU.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192515:1-109              .--.AGGUGGCU..AU.AGC.AAC.G.GGG.CU.-CAC.CUCU..U.C.CCAUCCCGAAC
+gi|674649611:c46346-46231       .UC.UAGUGAUA..AU.GGC.AAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|662019976:1-109              .UA.AGGCGGUU..AU.AGC.ACG.G.GGG.AU.CCAC.CUCU..A.C.CCAUUCCGAAC
+gi|452192233:1-115              .--.UGGUGACC..AU.AGC.UGU.G.AGG.AA.AUAC.ACGU..U.C.CCAUCCCGAAC
+gi|662019912:1-116              .CC.UGGCGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..C.C.CCAUCCCGAAC
+gi|485099214:1-112              .UA.GGGUGGU-..AC.GGC.ACG.G.GGG.AU.CCAC.CUCU..U.C.CCAUCCCGAAC
+gi|485099267:1-114              .--.UGGUGGUU..AU.GGC.GGA.G.CGC.CU.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991879:1-116              .CC.UAGCGACA..AU.AGC.GAG.U.GUG.AC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|91199943:841289-841402       .UC.CGGUGGAU..AU.AGU.AAG.A.AUG.AA.ACAC.CCGU..U.U.CCAUUCCGAAC
+gi|452192246:1-117              .UU.CGGUGGUC..AU.UGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|485099234:1-115              .UC.UGGUGAUG..AU.AGC.GGA.G.GGG.AU.CCAC.GCGU..U.C.CCAUCCCGAAC
+gi|452192344:1-109              .UC.AGGUGGCU..AU.AGC.GCG.A.AGG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|451992014:1-117              .CC.CGGUGAAA..AU.UGC.GGA.G.GGG.CC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|295083795:983988-984097      .UU.AGGUGGUU..AU.UGC.ACA.A.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|662019926:1-114              .CC.UGGUGACA..AU.GGC.GGA.G.AGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192269:1-114              .UC.UGACGACC..AU.AGC.GAG.U.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|485099271:1-111              .AU.GGGCGGCU..AU.AGC.AAU.G.UGG.AC.CCAC.CUCU..U.UaCCAUUCCGAAC
+gi|452192113:3-116              .UU.GGGCGGUU..AU.AGC.AAU.G.UGG.AU.CCAC.CUCU.uU.U.CCAUUCCGAAC
+gi|451991849:3-118              .CC.UGGUGGCU..AU.GGC.GGG.G.AAA.CU.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991897:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.UGG.CC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991755:1-116              .UU.UGGUGGCA..UU.AGA.GAA.A.GGG.AA.AUAC.CUGA..A.C.CCAUUCCGAAC
+gi|662019919:2-120              .UC.CGGUGGUU..AU.GGC.GAG.G.GGG.AA.ACAC.CUCU..U.C.CCUUUCCGAAC
+gi|452192313:1-118              .UA.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|CP012669.1|:c2071292-2071176 .CU.UGGUGGCC..AU.AGC.GUC.U.GUG.AC.CCAC.CCGA..U.C.CCAUCUCGAAC
+gi|662019985:3-116              .CU.UGACGACC..AU.AGC.AAG.G.UGG.AC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991908:1-116              .UC.UGGAAACC..AU.AGC.AUU.G.UGG.UC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991887:1-116              .CU.UGGCGACC..AU.AGC.AUU.G.UGG.UA.CCAC.CUGA..U.C.CCAUUCCGAAC
+gi|452192446:1-110              .UA.UGGUGAUU..AU.ACC.GAG.G.GUG.UU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991931:1-116              .--.CGGUGGCU..AU.GCC.GAG.A.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991866:1-117              .CC.UGGCGAAC..AU.AGC.GAG.C.GGG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP003538.1|:465652-465769    .CC.UGGUGAUU..UU.AGC.GAG.U.GCG.CA.ACAC.CCCA..U.C.CCAUACCGAAC
+gb|CP009556.1|:c2977167-2977053 .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|507148567:1-110              .--.GGGUGGUU..AU.AGC.AAU.G.UGG.CU.CCAC.CUCU..U.C.CCAUACCGAAC
+gb|CP000108.1|:107551-107659    .UA.CGGCGACU..AU.GUC.UCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|974573954:1154616-1154733    .UU.CGGCGGCC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|612149278:100728-100841      .AU.UGGUGAUU..AU.AGC.AAC.A.AGG.AU.CCAC.CUCU..U.A.CCAUUCCGAAC
+gb|CP010105.1|:54410-54523      .AU.UGGUGAUU..AU.AGC.AAC.A.AGG.AU.ACAC.CUCU..U.U.CCAUUCCGAAC
+gi|452192431:1-116              .UC.UGGUGGUC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG..A.U.CCAUGCCGAAC
+gi|451991871:1-117              .CU.GGGUGACC..UU.AGC.GAG.G.AGG.AC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148548:1-112              .--.AGGUGGUU..AU.AGC.AGU.G.AGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|485099263:1-105              .--.AGGUGGUU..AU.AGC.GAU.G.GGG.CU.-CAC.CUCU..U.A.CCUUUCCGAAC
+gi|452192343:1-108              .UA.AGGUGGUU..AU.AGC.GAC.G.GGG.CU.-CAC.CUCU..U.C.CCAUUUCGAAC
+gi|507148434:3-120              .UU.CGGUGGCU..AU.GGC.AAA.G.AGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451992023:1-116              .--.UGGUGGCU..AU.GCC.GAG.G.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148443:2-118              .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192415:1-110              .CA.UGGUGUUA..AU.AGG.GCG.G.GUG.UU.-CAC.CUCU..U.C.CCAUCUCGAAC
+gi|452192456:1-115              .--.CGGUGGUC..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|662019946:3-116              .CU.UGGUGGCU..UU.UGC.GGG.G.UUA.CU.GCAC.CCGU..U.C.UCAUUCCGAAC
+gi|507148456:1-116              .CC.UGGUGUCC..AU.AGC.GGU.G.GGG.AA.ACAC.CCGG.aA.A.CCAUUCCGAAC
+gi|507148467:1-115              .-C.UGGUGCCC..AU.AGC.GGG.G.AGG.UU.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|452192152:1-115              .--.CGGCCGCC..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|JN173082.1|:1612-1730        .UC.UGGUGGCG..AU.GCGaCUU.G.GGG.AC.ACAC.CCGU..U.C.UCAUCCCGAAC
+gb|GU474895.1|:11785-11903      .UC.UGGUGGUC..AC.AGC.GAG.G.GCC.CCaACAC.CCGA..U.C.CCAUCCCGAAC
+gb|GU474886.1|:c24601-24485     .UU.UGGUGAUC..AC.AGC.ACG.A.GCA.AA.ACAC.CCGG..U.C.CCAUCCCGAAC
+gb|GU474885.1|:c28506-28393     .-C.UGGCGACU..AU.AGC.GAG.C.GGG.UA.CCAC.CUGA..U.C.CCAUAUCGAAC
+gi|452192265:1-115              .UU.CGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CGGU..U.C.CCAUUCCGAAC
+gi|452192396:1-108              .UA.AGGUGAUU..AU.AGC.GAU.A.GGG.CU.-CAC.CUCU..U.A.CCAUUCCGAAC
+gi|452192306:1-111              .UC.AGGUGACU..AC.AGC.ACC.G.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|507148610:1-117              .UC.UGGUGGCA..AU.AAC.GAG.A.AGG.AC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192220:1-115              .--.CGGUGACA..AU.AGC.GAA.G.AGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991946:2-116              .CC.UGGUGGUU..AU.GCC.GAG.A.GGU.CC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|507148520:1-115              .UC.UGGUGCCA..AU.GGC.AAA.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|452192350:1-110              .--.-GGUGUCU..AU.AAC.CGG.G.GG-.AU.CCAC.CUCU..U.U.CCAUUCCGAAC
+gi|451992029:1-107              .--.-GGUGACU..AU.AGC.GUU.G.GGG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991997:1-114              .UC.UGGAAACC..AU.AGA.GCU.G.UGG.CA.CCAC.CUGA..A.U.CCAUUCCGAAC
+gi|451991967:1-116              .UC.UGGAAACC..AU.AGC.AUU.G.UGG.CC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192535:1-112              .--.UGGUGACC..AU.AGC.GAG.C.GUG.UC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|47202:1-118                  .CU.UGGCGGUC..AU.AGC.GAA.G.AGGgUC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192331:1-114              .GG.UGGUGUCG..CU.GGC.GAG.A.GGG.UC.ACAC.CCGG..C.U.CCAUUCCGAAC
+gb|M35164.1|PLL5SRRNA:1-108     .UC.CGGUGACC..AU.AUC.GAA.A.AGG.UC.AUAC.CUGU..U.C.CCAUUCCGAAC
+gi|451991662:2-107              .-U.UGGUGGCU..AU.AGC.AAA.A.AUG.AA.CCAC.CCGA..U.C.UCAUUUCGAAC
+gi|452192154:1-114              .--.UGGCGACA..AU.AGA.GAG.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|507148534:1-112              .--.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|452192440:1-114              .--.CGGUGGCU..AU.GGC.GGG.G.CGC.CC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192401:1-116              .--.CGGUGGUU..UU.UGC.GAU.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|452192545:1-116              .--.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUACCGAAC
+gi|451991953:2-118              .CC.UGGUGGUU..AU.AGC.GAG.G.AGC.CU.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192443:1-110              .UA.UGGUGACU..AU.AGC.GGU.G.GGG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|507148542:1-113              .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|452192309:1-115              .-C.GGGUGACA..AU.AGC.GAA.G.GGG.AA.ACAC.CUGU..A.C.CCAUUCCGAAC
+gi|452192267:1-111              .UU.AGGUGGCC..AU.GGC.GAC.G.GGG.CC.-CAC.CCCU..U.A.CCAUUCCGAAC
+gi|404432500:c268700-268590     .AA.AGGUGACG..AA.AGC.GCU.G.GUG.UG.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991784:1-113              .CC.UGGUGACC..AU.AGC.GAG.C.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|662019913:1-111              .--.-GGCGGCC..-U.AGC.GCA.G.GGG.UC.CCAC.CUCU..U.C.CCAUCCCGAAC
+gi|330752281:16273-16380        .AA.UGGUGGUU..AU.AGC.GUA.G.GUG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192206:1-115              .--.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|452192362:1-117              .GU.CGGUGGUC..AU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|451992018:1-116              .--.CGGUGGCC..AG.AGC.GCA.G.UGG.UC.CCAC.CCGG..U.C.CCGUUCCGAAC
+gi|452192264:1-114              .-U.UGGUGGUU..AU.AGA.GGA.G.AUG.UA.ACAC.CUGA..G.C.CCAUUCCGAAC
+gi|485099235:1-115              .UC.UGGUGAUU..AU.UCC.GGA.G.GGG.UU.CCAC.CCGU..U.U.CCAUCUCGAAC
+gi|507148546:1-112              .UU.AGGCGGCC..-U.AGC.GCA.G.GGG.GC.CCAC.CUCU..U.C.CCAUCCCGAAC
+gi|662019994:1-113              .CC.UGGCGGCU..AU.AGC.GCU.G.UGG.UC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192327:1-115              .-C.UGGUGCCC..AU.AGC.GGC.G.GGG.AA.ACAC.CCGU..G.C.CCAUUCCGAAC
+gi|452192411:1-115              .CU.UGGUGGUU..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|485099273:1-118              .GU.CGGUGGUU.gAU.AGC.GGC.A.GGG.AC.ACGC.CCGG..A.C.CCAUUCCGAAC
+gi|451992036:1-112              .--.-UGUGGCU..AU.GCC.GAG.A.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192096:1-116              .--.CGGCGGCU..AU.AGC.GAG.G.AGG.CC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|944192093:142971-143088      .CC.UGGUGGUC..AU.AGC.GGU.G.CGC.CC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gb|CP005078.1|:437054-437159    .UC.UGGUGCUU..AU.GGC.AUA.G.UGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|526641908:1-103              .--.UGGUGCUU..AU.GGC.AUA.G.UGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|451991589:2-119              .UG.CGGCGGCC..AU.GGC.CCA.G.GUG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991896:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|507148581:1-114              .UU.AGGUGGUU..AU.AGC.AGU.G.AGG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|451992020:1-114              .--.UGGUGUCC..AU.AGC.GGU.G.GGG.AA.ACAC.CCGG.cU.U.CCAUUCCGAAC
+gi|223587978:c1375487-1375371   .CU.UGGCGACC..AU.AGC.AUU.G.UGG.AC.CCAC.CUGA..U.U.CCAUGCCGAAC
+gi|344169122:985-1098           .CC.UGGUGACC..AU.AGC.GAG.U.CGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991939:1-113              .--.UCGUGACU..AU.AGC.GAA.G.GGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|507148553:1-110              .--.-GGUAGUU..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192277:1-112              .--.AGGUGGCU..AU.AGA.GAG.A.GGG.AA.ACGC.CUGG..U.C.CCAUUCCGAAC
+gi|485099288:1-116              .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192092:1-114              .--.UGGUGGCU..UC.UGC.GAG.G.CGA.UC.AGAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192340:1-118              .CC.UGGUAAUU..AU.UGC.GAA.G.AGG.UA.AUAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991696:3-121              .UC.UGGUGGUC..AU.AGC.GGA.G.GGG.CA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|662019943:1-117              .UU.CGGUGGUU..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.UCAUUUCGAAC
+gi|451991868:2-117              .CC.UGGCGGCC..AU.AGC.GCC.G.UGG.AA.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|451991823:1-113              .CC.UGAUGACC..AU.AGC.GAA.G.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991830:1-114              .UC.UGGAAACC..AU.AGA.GCU.G.UGG.CA.CCAC.CUGA..U.C.CCAUUCCGAAC
+gi|452192348:1-114              .--.-GGUGUCU..AU.AGC.AAC.G.AGG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gb|CP001854.1|:c3761242-3761125 .UC.CGGUGGCU..AU.AGC.GAG.A.GGG.AA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gi|485099217:1-110              .--.-UGCGACC..AU.UGA.GGA.G.GGG.CC.ACAC.CCGA..U.C.CCAUUCCGAAC
+gi|452192310:1-115              .CC.CCGUGCCC..AU.AGC.GGC.G.UGG.UC.CCAC.CCGU..U.C.CCAUACCGAAC
+gb|CP003989.2|:c3556699-3556583 .UC.UGGCGGCC..AU.AGC.GAA.C.AGG.AA.CCAC.CCGA..U.C.CCAUCUCGAAC
+gi|452192367:1-117              .CC.CCGUGCCC..AU.AGC.GGC.G.UGG.UU.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192190:1-116              .--.CGGCGGUC..AC.AGC.GUA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192301:1-109              .--.-GGUGGUU..AU.AGC.GAC.A.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192470:2-119              .UC.CGGUGGCA..AU.GUC.GGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991742:1-116              .UC.UGGUAGCG..AU.AGC.GAA.G.AGG.CC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gb|GU474939.1|:c103790-103680   .UA.UGGUGGUU..AU.CGC.AGU.G.UGG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192162:1-116              .--.CGGUGACC..AU.AGC.GUC.G.GGG.AA.ACAC.CCAG..U.CuCCAUUCCGAAC
+gi|452192325:1-113              .-U.UGGUGACC..AA.GGA.GGA.G.GGG.GU.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|451991979:1-117              .UU.CGGUGGCC..AU.GGC.AAA.G.AGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|485099291:1-115              .--.UGGCGGCC..GU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|452192330:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.CGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gb|CP013862.1|:c2508425-2508307 .UC.UGGUAGCG..AU.AGC.GGA.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|451991679:2-121              .GC.UGGCAACU..AG.AGC.GUC.A.GGG.CC.AUAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192376:1-117              .CC.GGGUGCCC..AU.ACC.GGA.G.GGG.CC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP003240.1|:83241-83356      .CC.UGGUGGCU..AU.GGC.GGA.C.GUG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|GQ228684.1|:92-207           .UC.UGGUGAUG..AU.GGC.GGA.G.GGG.AC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|451991973:2-119              .UA.CGGCGGUC..AU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.ACAUUCCGAAC
+gi|451991920:1-115              .--.CGGCGGUC..AU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|451992037:1-118              .UC.CGCGGGCA..AU.AGC.GAA.G.GGG.AA.ACAC.CCGG..UaU.CCAUUCCGAAC
+gi|451992044:1-112              .--.UGGUGGCC..AU.AGC.GAG.U.GGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|485099260:3-121              .UC.CGGUGGUU..AU.UCC.GAU.G.GUG.UC.ACAC.CCGA..U.C.CCAUUCCGAAC
+gb|CP009452.1|:158690-158806    .CU.UGGUGACC..AU.GGC.GUC.A.GUG.AC.CCAC.CCGA..U.C.CCAUCUCGAAC
+gi|451991718:4-120              .CU.UGGUGACC..AU.AGC.GUC.A.GUG.AC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|319409085:c134159-134041     .CU.UGGUGGUU..AU.GGC.GGA.A.UGC.CU.GCAC.CCGA..U.CcCCAUCCCGAAC
+gi|452192406:1-117              .UG.UCGUGACG..AU.AGC.ACU.G.AGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192519:1-115              .CC.UGGUGACC..AU.AGC.GAG.U.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|507148418:1-113              .AU.GGGUGGUU..AU.AGC.AAU.G.UGG.AU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192126:4-120              .GU.UGGUGGUU..AG.UGC.GGU.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|451991819:1-117              .UG.CGGUGGCU..AU.AUC.GGU.G.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451992038:1-116              .--.CGGUGGCU..AU.AUC.GGU.G.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|485099287:1-113              .--.CGGUGACA..AU.GAC.GGA.G.AGG.AA.ACAC.CUGU..U.C.CCAUUCCGAAC
+gi|451991932:1-114              .--.UGGUGGCC..AU.AGC.GUC.U.GUG.AC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|662019987:1-119              .GU.CGGUGGCC..AU.AGC.GGC.A.GGG.AA.ACGC.CCGGauA.C.CCAUUCCGAAC
+gi|452192432:1-117              .UU.UGGUGGCG..AU.AGC.GGA.G.GGG.UU.CCAC.ACGU..A.C.CCAUCCCGAAC
+gi|662020012:1-117              .UU.UGGUGGUC..AU.AGC.GUA.A.GCA.AA.ACAC.CCGG..C.U.CCAUUCCGAAC
+gi|452192386:2-113              .-C.UGAUGACC..AU.AGC.GAG.U.UGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991806:2-113              .-C.UGAUGAUC..AU.AGC.GGA.C.UGG.AA.CCAC.CUGA..U.C.CCAUUCCGAAC
+gi|38851:2-119                  .UA.CGGCGGUC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUACCGAAC
+gi|451991566:2-115              .-C.UGGUGGCU..AU.GCC.GGG.G.GUU.CC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gi|662019932:1-113              .--.UGGUGAGU..AU.AGC.UAU.G.GGG.GU.ACAC.CUAG..U.U.ACAUUCCGAAC
+gi|451991999:2-118              .CU.UGACGACC..AU.AGC.GAG.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|507148438:3-120              .GU.CGGUGGUG..AU.AGU.AGC.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|CP009794.1|:c305500-305387   .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|JX556289.1|:c400-283         .CC.UGGUGGUU..AU.GGC.GGG.G.UCG.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gb|M11544.1|TFERRATNO:3-118     .CC.UGGUGGCC..AU.UGC.GAG.G.AGC.CU.GAAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192351:1-110              .--.-GGUGCCU..AU.AUC.GGC.G.GUG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gb|M76578.1|ABCRR5SI:3-118      .CC.UGGUGGCU..AU.GGC.GGG.A.GAG.AU.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192308:1-114              .UC.AGGUGGCU..AU.AGA.GAG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451992016:1-112              .--.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991673:1-115              .UC.UGGUGACA..AU.GGC.AAG.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|451991646:1-115              .UC.UGGUGACA..AU.GGC.AAA.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|452192389:1-116              .CU.UGGCGACC..AU.AGC.GGA.A.UGG.AA.CCAC.CUGA..U.C.CCUUCUCGAAC
+gi|452192441:1-114              .CU.UGGCGGCC..AU.AGC.GCU.C.UGG.AC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|CP000159.1|:c3324875-3324762 .CC.UGGUGGCU..AU.AGC.GCG.G.GGG.AA.ACAC.CUCU..U.C.UCAUUUCGAAC
+gb|CP003546.1|:c900696-900580   .CC.UGGCGGCA..CU.AGC.GCA.G.UGG.UC.CCAC.CUGA..U.C.CCAUACCGAAC
+gi|452192316:1-113              .--.UGGUUACA..AU.AGA.GAA.A.GAG.AU.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|1045039:2-119                .UU.CGGUGGUG..AU.AGC.GGU.A.GGG.GU.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192394:1-117              .UA.CGGCGGUC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|507148500:1-115              .--.CGGCGGCC..AU.GGC.GAG.A.GGG.AA.ACGC.CCGG..C.A.ACAUUCCGAAC
+gi|452192090:2-119              .CU.UGGCGGCC..AA.AGU.GCG.G.UGG.AC.CCAC.CUGA..A.A.CCAUCCCGAAC
+gi|662019968:1-116              .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192213:1-116              .--.UCGGGACC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG.uU.U.CCAUUCCGAAC
+gi|451991625:2-118              .UC.UGGCGGCC..AU.AGC.GGU.G.UGG.CA.CCAC.CUGA..A.U.CCAUUCCGAAC
+gi|452192536:1-118              .UA.CGGCGGCU..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|512125287:1-116              .UU.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|452192261:1-115              .--.CAGCGGCC..AU.GGC.AGG.G.GAG.GC.ACAC.CUGG..U.C.CCAUCCCGAAC
+gi|662019957:1-115              .UU.UGGUGGCU..AC.AGC.ACA.A.GUG.AA.ACAC.CCGG..U.C.CCUUCCCGAAC
+gi|451991724:1-116              .-U.UGGUGAUU..UG.AGC.GGC.G.GGG.GU.ACAC.CCGG..U.C.CCAUCCCGAAC
+gi|451991858:3-120              .UA.CGGCGGCC..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991948:1-116              .--.CGGUGGUC..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.UCAUUCCGAAC
+gb|JN590777.1|:288-403          .UU.UGGUGAUG..AU.GGC.GGA.G.GGG.AA.CCAC.GCGU..U.C.CCAUCUCGAAC
+gi|1045235:2-120                .UU.CGGUGGUC..AU.AGC.GGU.U.GGG.GA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|451991801:1-114              .UC.CGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192445:1-113              .-C.UGGCGGCC..AU.AGC.GUU.G.UGG.AA.CCAC.CUGA..U.U.CCAUGCCGAAC
+gi|6468276:1-117                .CC.UAGUGGUG..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP006947.1|:407829-407945    .UU.UGGCGACC..AU.AGC.ACU.U.UGG.AC.CCAC.CUGA..U.U.CCAUCCCGAAC
+gb|GU474881.1|:c27476-27357     .CC.CGGUGGUC..AU.AGG.AGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUACCGAAC
+gb|CP013015.1|:c265431-265313   .CC.CGGUGGCA..AU.ACU.GGA.G.GGG.CC.ACAC.CCGA..U.C.CCAUUCCGAAC
+gi|452192305:1-116              .--.GGGUGCCG..AU.ACCgGAG.C.GAG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|451991836:1-114              .CC.UGGUGACC..AU.AGC.AAG.U.UGG.AA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991574:1-106              .--.-GGUGGCG..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192226:1-117              .--.UGGUGGUU..UU.AGC.GGU.A.AGG.UU.CCAC.CCGU..U.C.CCAUUUCGAAC
+gb|GU474851.1|:c16045-15932     .UA.UGGUGGUU..AU.AGC.GAU.A.GGG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192104:1-113              .-U.UGGUAGCC..AU.GGA.GGA.G.AGG.GU.ACAC.CCAA..U.C.CCAUUCCGAAC
+gb|CP014865.1|:260867-260983    .CU.UGGUGGUC..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gb|CP013133.1|:c1167901-1167785 .CU.UGGUGGUU..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|452192542:1-112              .UU.AGGUGGCC..AU.GGC.GGC.G.GGG.CC.-CAC.CCCU..U.U.CCAUUCCGAAC
+gi|308271278:c576085-575968     .UU.CGGUGGUU..AU.AGC.GAA.G.AUG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP012042.1|:2201200-2201314  .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|452192422:1-112              .CU.AGGUGGCC..AU.GGC.GAC.G.GGG.CC.-CAC.CCCU..U.U.CCAUUCCGAAC
+gb|M60936.1|CLBRRNAB:2-119      .UU.CGGCGGCC..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.C.ACAUUCCGAAC
+gi|451991687:1-115              .UC.UGGUGACG..AU.AUC.GGA.G.GGG.GU.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991942:1-114              .--.UGGUGGUU..CU.GGC.GGG.G.UGG.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gb|M11537.1|TFERRATN:1-117      .CC.UGGUGUCC..AU.AGA.GCG.G.UGG.AA.CCAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192215:1-108              .--.CGGUGGCG..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451992013:1-114              .-C.UGGUGACC..AU.AGG.CGA.G.GGG.UU.CCAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP011367.1|:c2565661-2565545 .UC.UGGCGGCA..AU.AGC.GAG.U.AGG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP007239.1|:c267-150         .CC.UGGUGGUU..CU.GGC.GGG.G.UGG.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|507148545:1-112              .--.UGGUGACC..AU.AGC.GAG.C.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|4468666:2-115                .CC.UGGUGACC..AU.AGC.GAG.C.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|AF416766.1|:2879-2995        .GC.UGGUGGUA..AU.GGC.AGG.A.GUG.AA.ACAC.CCGG..U.A.ACAUUCCGAAC
+gb|AF416765.1|:2877-2991        .--.UGGUGGUA..AU.AGC.GGA.A.GUG.GU.ACAC.CCAG.cU.U.ACAUUUCGAAC
+gb|CP000555.1|:357385-357499    .CC.UGAUGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|485099256:2-121              .UU.CGGUGGUC..AU.AGC.GGU.G.GGG.GA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|526641902:1-115              .UC.CGGUGACC..AU.ACU.GGA.G.AGG.AU.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148571:1-110              .UA.AGGUGGUU..AU.AGC.GAC.G.GGG.CU.-CAC.CUCU..U.A.CCUUUCCGAAC
+gi|451992027:1-104              .--.CGGUGACU..AU.AUC.CUG.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|82523815:1059-1176           .CC.CGGCAACC..AU.GAC.AGA.G.GGG.AA.ACGC.CCGU..U.C.CCAUUCCGAAC
+gi|82523856:1049-1164           .-C.CGGUGGCU..AU.CGC.GGA.G.GGG.CC.ACAC.CCGU..U.C.CCUUUCCGAAU
+gb|EU819142.1|:c1163-1045       .UU.UGGUGAUC..AU.AGC.GCC.A.AUG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|330751977:c15315-15203       .UA.GGGUGGUU..AU.UGC.AUU.G.GGG.CU.-CAC.CUCU..U.C.CCAUCUCGAAC
+gb|GU180083.1|:c9355-9239       .CC.CGGUGGUC..AU.AGC.GGA.G.GGG.AA.CCAC.CUGU..U.C.CCAUCCCGAAC
+gb|GU474920.1|:13810-13926      .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|507148594:1-116              .CA.UGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG..A.U.CCAUGCCGAAC
+gi|451991842:1-115              .UU.UGGUGGCC..AA.AGC.ACA.A.GCG.AA.ACAC.CCGG..U.C.CCUUCCCGAAC
+gi|452192125:1-108              .--.UGGUGACU..AU.UGG.ACU.G.GUG.UU.-CAC.CUCU..U.C.CCAUCCCGAAC
+gi|451991816:3-117              .CC.UGAUGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|452192195:1-117              .--.GGGUGCCG..AU.ACUgGGG.C.GGG.AA.ACAC.CCGG..U.U.CCAUUCCGAAC
+gi|451991933:1-117              .--.GGGUGCCG..AU.ACUgGGG.C.GGG.AA.ACAC.CCGG..U.U.CCAUUCCGAAC
+gi|662019962:1-113              .CC.UGAUGACC..AU.AGC.GAG.U.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|507148516:1-115              .UC.UGGUGGCC..AU.AGUgGCC.G.UU-.AA.ACAC.CCGA..U.C.CCUUCCCGAAC
+gb|CP012909.1|:64567-64682      .UC.UGGUGGCC..AU.AGUgGCC.G.UU-.AA.ACAC.CCGA..U.C.CCUUCCCGAAC
+gi|451991768:2-117              .UU.UGGUGGUC..AU.AGC.GAGcG.CA-.AU.ACAC.CCGG..U.C.CCUUCCCGAAC
+gi|662019931:1-117              .GU.CGGUGGUU..UU.AGC.GGC.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|452192538:1-116              .--.CGGCGGUC..AU.GGC.GAA.A.GGG.AA.ACGC.CCGG..U.C.UCAUUCCGAAC
+gi|82523952:1183-1297           .-U.AGGUGGCU..AU.AGA.GAG.A.GGG.AA.ACGC.CUGG..U.C.CCAUUCCGAAC
+gb|AF267889.1|AF267889:1-112    .--.-GGUGAUG..AU.GGC.AGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|507148554:1-109              .CC.UGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|662019937:1-111              .--.UGGUGAUA..UU.GGA.AAA.A.GGG.AC.ACAC.CUGA..U.A.CCAUUCCGAAC
+gi|451991642:2-119              .CU.UGGUGGUU..AU.GGC.GGA.G.UGA.AC.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192178:1-116              .--.UGGUGGCG..AC.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|452192518:1-111              .--.UGGUGCUU..AA.GUU.AAA.A.AGG.AC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|43349:2-121                  .CC.UGGCGACC..AU.AGC.GAG.C.GGG.AA.CCAC.CCGA..U.C.CGAUGCCGAAC
+gi|452192101:1-116              .--.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192124:1-117              .--.CGGCGGCC..AU.AGC.GAG.GcGGG.AA.ACGC.CCGG..U.A.CCAUUCCGAAC
+gi|452192434:1-116              .--.CGGCGGCU..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|M33885.1|CYTRRAA:1-111       .UU.AGGUGCCU..AU.AUC.GGU.G.GUG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192363:1-113              .-C.UGGUGAGG..AU.AGCaUGC.A.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192143:1-111              .--.-CGCGGCC..AU.GGA.GGC.G.GGG.AU.-CAC.CCGG..U.C.CCAUCCCGAAC
+gi|452192551:1-117              .CU.UGGUGGCU..GU.AGA.GAA.G.AGG.AA.ACAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991561:1-114              .-U.UGGUGAUA..AU.AGA.GAG.A.GGG.AA.ACAC.CUGA..U.A.CCAUUCCGAAC
+gi|451991559:1-113              .-U.UGGCGAUA..CU.GGA.GAA.A.GGG.AU.ACAC.CUGA..U.A.CCAUUCCGAAC
+gi|451991595:1-114              .-U.UGGUGAUA..AU.GGA.AAA.A.GGG.AC.ACAC.CUGA..C.C.CCAUUCCGAAC
+gi|451991669:1-114              .-U.UGGUGAUA..AU.GGA.AAA.A.GGG.AC.ACAC.CUGA..C.C.CCAUUCCGAAC
+gi|452192507:1-114              .-U.UGGUGAUA..AU.GGA.AAA.A.GGG.AU.ACAC.CUGA..U.A.CCAUUCCGAAC
+gi|485099265:1-110              .--.-GGUGAUA..AU.GGA.AAA.A.GGG.AC.ACAC.CUGA..U.A.CCAUUCCGAAC
+gi|452192550:1-116              .CU.UGGUGGCA..UU.GGA.GAA.G.AGG.AA.AUAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991732:2-119              .CC.UGGCGGCC..UU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gb|CP010517.1|:c1904053-1903939 .CC.UGGUGACC..AU.AGC.AAG.U.CGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|48330:3-121                  .CU.UGGUGGCU..AU.AGC.GUC.U.GUG.AC.CCAC.CCGA..U.C.CCAUCUCGAAC
+gi|452192467:1-113              .CC.UGGCGGCU..AU.AGC.GCU.G.UGG.UC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192232:1-115              .--.UGGUGGUC..AC.AGC.GGA.G.GGG.CC.ACAC.CCGG..U.U.CCAUGCCGAAC
+gi|452192187:1-114              .--.CGGUGGCC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG..A.U.CCAUGCCGAAC
+gb|GU324241.1|:5261-5378        .CC.UGGUGGUU..UU.AGC.GAA.G.AGC.CU.CAAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991807:3-119              .CC.UGGUGGUA..AU.GGC.AGG.G.GGU.CC.CCAC.CGGA..U.C.CCAUCCCGAAC
+gi|451991889:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991984:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991623:16-125             .CU.UGGUGGUU..UU.AGC.AAA.A.AUG.AA.ACAC.CCGA..U.C.CCAUCUCGAAU
+gi|330752167:c614-504           .UA.UGGUGGUU..AU.UGC.AGU.G.UGG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192183:1-117              .--.UGGCGGCA..AU.GCC.GGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUCUCGAAC
+gi|507148490:1-116              .UC.UGGUGGCG..AU.AGC.AAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|451991664:1-112              .--.CGGUGGCA..AU.GGC.AAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|452192151:1-108              .--.UGGUGGUU..UU.GCC.AAG.G.GUG.UU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192485:1-114              .UC.UGGUGAUU..AU.GCC.GGA.G.GGG.UU.CCAC.CCGU..U.C.CCAUACCGAAC
+gb|CP011489.1|:1116931-1117048  .UC.CGGUGGCA..AU.AGC.GGC.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|AY242847.1|:60-175           .UU.UGGCGACU..AU.GGC.GGA.G.GGG.UU.CCAC.GCGU..U.C.CCAUCUCGAAC
+gb|CP003883.1|:900336-900441    .-U.UGGUGACU..AU.AGC.AAA.A.AUG.AA.CCAC.CCGA..U.C.UCAUUUCGAAC
+gi|451991581:1-115              .-U.UGGUGAGU..AU.AGC.UAU.G.GGG.GU.ACAC.CUAG..U.U.ACAUUCCGAAC
+gi|451991710:1-113              .--.-AGUGAUG..AU.GGC.AAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|662020023:1-118              .CC.UCGGGACC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG.uU.U.CCAUUCCGAAC
+gi|485099270:1-114              .CC.UGGCGGCC..AU.AGC.GGC.G.UGG.UC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991864:1-115              .CC.GGGUGGUU..AU.UGC.AGG.G.GGA.CC.GCAC.ACGU..U.C.CCAUCCCGAAC
+gi|452192258:1-113              .CC.UGGUGGUU..AU.GUC.GGA.G.GUU.CC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gb|GU567959.1|:c25280-25160     .UC.UGGUGAUC..AU.AGA.UGA.G.GGG.AA.ACAC.ACGU..U.U.CCAUCCCGAAC
+gi|46916688:c266432-266316      .UC.UGGCGACC..AU.AGC.GCU.G.UGG.CU.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|452192300:1-117              .UC.CGGUGGCC..AU.AGC.GGA.G.GGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP008700.1|:c1753988-1753871 .CC.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|451991678:1-119              .UC.CGGUGGUU..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|337294156:c41069-40956       .AU.UGGUGGUU..AU.AGA.GAA.G.GGG.GU.ACAC.CUGA..A.C.CCAUUCCGAAC
+gi|451991974:1-114              .UC.UGGAAACC..AU.AGA.GUU.G.UGG.CA.CCAC.CUGA..A.U.CCAUUCCGAAC
+gi|451991590:2-118              .CU.UGGUGACA..AU.AGC.AUU.G.UGG.UC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991688:1-111              .--.-GGUGACG..AU.GGC.AGA.G.AGG.UC.ACAC.CUGU..U.C.CCAUACCGAAC
+gi|507148511:1-115              .--.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gb|KF040403.1|:5221-5338        .CC.UGGUGGUU..AU.GGC.GGA.G.CGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|452192421:1-117              .UU.CGGUGGUC..AU.AGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUUCGAAC
+gi|526641910:1-116              .--.CGGUGGUC..AU.UGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192528:1-115              .CC.UGGCGGCC..GU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gb|HM454280.1|:28084-28201      .GC.CGGUGGCG..UU.ACC.AGA.G.AGG.CU.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|EU285525.1|:5589-5706        .CC.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|451991985:1-117              .--.UGGUGGCG..AU.GCGcUUA.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|485099284:1-117              .AU.CGGUGGCG..AA.AGC.AAA.G.AGG.AU.CCAC.CCGU..U.C.CCAUUCCGAAC
+gb|GU567972.1|:c27755-27638     .CC.CACCGUCC..AU.AGA.GCA.G.GGG.CC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192392:1-115              .--.UGGUGGUU..AU.AGC.GUC.G.GGG.GU.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|452192349:1-115              .-C.UGGUGCCC..AU.AGC.GGC.G.GGG.AA.ACAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991555:2-117              .-C.UGGUGGCC..AU.AGC.GGG.G.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gb|AY744399.1|:60759-60876      .CC.AGGUGGUU..AU.GGC.ACA.G.GUG.UC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991904:1-114              .--.UGGUGACA..AU.AGC.CUU.G.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991703:3-119              .CC.UGGUGGCC..AU.UGC.GGG.G.AGC.CU.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192138:1-108              .--.-GGUGGUU..UU.AGC.AGA.G.GGG.CU.-CAC.CUGU..U.C.CCAUUCCGAAC
+gi|451992002:1-114              .--.UGGAAACA..AU.AGC.AUU.G.UGG.UC.CCAC.CUGA..U.C.CCAUCUCGAAC
+gi|452192188:1-119              .UA.CGGCGGUC..AU.AGC.GAG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192366:1-117              .UU.CGGUGGCC..AU.ACC.ACG.G.GGG.UC.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192416:1-114              .--.UGGUGGUC..AU.AGC.GCA.A.GUG.AA.ACAC.CCGG..U.C.CCAUCCCGAAC
+gi|451991695:2-118              .UC.UGGAAACC..AU.AGC.AUU.G.UGG.CA.CCAC.CUGA..A.C.CCAUCUCGAAC
+gi|451991645:2-118              .CC.UGACGACC..AU.AGA.GUA.U.UGG.AA.CCAC.CUGA..U.C.CCAUGCCGAAC
+gb|M33888.1|FVBRRAA:2-119       .UA.CGGCGGCC..AU.AGC.GGC.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|507148466:1-113              .--.UGGUGGCG..AU.ACC.GGA.G.GGG.GU.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192332:1-112              .UA.AGGUGACC..AU.GGC.GAU.A.GGG.UC.-CAC.CCCU..U.A.CCAUUCCGAAC
+gb|JN092297.1|:185-302          .CC.UGGCGGCA..AC.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|374855139:12123-12240        .CU.UGGUGAUU..AU.AGC.GGC.G.GGG.GU.ACAC.CCGG..U.C.CCAUCCCGAAC
+gi|451991791:1-113              .-U.UGGUGACC..AU.GGA.GGC.U.GGG.GU.ACAC.CCGA..U.C.CCAUUCCGAAC
+gi|507148514:1-113              .--.CGGUGGCA..AU.AGC.GAA.G.AGG.UC.AUAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192387:1-116              .UC.CGGUGGCC..AU.GCC.GGA.G.GGG.GA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|AY281352.1|:c916-797         .CC.CGGUGGUC..AU.AGG.AGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|GU474930.1|:5530-5646        .CC.UGGUGGUU..AU.AGC.GAG.G.AGC.CC.ACAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP007141.1|:c616038-615920   .UC.GGGUGCCG..AU.ACCaGAG.C.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|452192240:1-109              .UC.CGGUGGCG..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991978:2-119              .CC.UGGUGGCA..CU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|452192500:1-109              .UA.AGGUGGUU..AU.AGC.AAC.G.GGG.CU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|485099222:1-117              .CC.CCGUGCCC..AU.AGC.GGC.G.UGG.AA.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991862:4-118              .UC.UGGAAACC..AU.AGA.GCU.G.UGG.CA.CCAC.CUGA..U.C.CCAUUCCGAAC
+gi|507148582:1-114              .--.UGGUGGUU..AU.GGC.GGA.G.CGC.CU.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|662019991:1-103              .UC.UGGUGACU..AU.ACC.GGA.G.GGG.UA.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192177:1-115              .--.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|452192280:1-115              .UC.CGGUGGCG..AA.AGA.GCG.A.GGG.UA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192548:1-105              .--.AGGUGGUU..AU.UGC.GGC.G.GGG.CU.-CAC.CUCU..U.C.CCAUCCCGAAC
+gb|CP011075.1|:188893-189010    .UC.UGGUGAUG..AU.GGC.AGA.G.GGG.UC.ACAC.ACGU..U.C.CCAUUCCGAAC
+gb|EU723620.1|:400-513          .UC.UGGUGACG..AU.AGC.GAA.G.GGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|507148502:1-115              .--.CGGUGGUC..AU.AGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|507148461:1-117              .-U.UGGUGGUC..AU.AGC.ACG.A.GUG.AA.ACAC.CUGG..C.U.CCAUUCCGAAC
+gb|CP012160.1|:c2905493-2905375 .UU.UGGUGGUC..AU.AGC.ACG.A.GUG.AA.ACAC.CUGG..C.U.CCAUUCCGAAC
+gi|452192130:1-115              .--.CGGUGGCC..AU.GGC.GGU.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192163:1-116              .--.CGGCGGUU..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192494:1-113              .--.-GGUGGUU..AU.UGC.UGG.A.GGG.UC.ACAC.CCGG..U.C.UCAUUCCGAAC
+gi|452192254:1-115              .CC.UGGUGAUU..AU.GGC.GGG.G.UGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|452192299:1-117              .UA.CGGCUGCC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..C.U.CCAUUCCGAAC
+gi|451991831:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|485099215:1-111              .UU.UGGUGGCU..GU.UGC.GGC.G.GUG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192243:1-114              .--.-UGUGCCC..CU.AGC.GGC.G.UGG.AA.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|374852364:37530-37645        .UC.CGGUGACG..AU.AGG.GCG.G.GGG.AA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gi|374852692:c17317-17202       .-U.UGGUGACU..AU.GCC.GCG.G.GGG.AA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gb|GU567999.1|:c14701-14585     .CC.UGGCGGCC..AU.AGC.GAG.U.GGG.UA.CCAC.CUGA..A.U.CCAUCCCGAAC
+gi|452192097:1-113              .--.UGGUGACU..AU.ACC.GGA.G.GGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991845:1-115              .AA.GGGUGACG..AU.AGC.GGC.G.GGG.AU.ACAC.CUCU..U.C.CCAUUCCGAAC
+gi|959677888:1189303-1189416    .CC.UGGUGACC..AU.AGC.GAG.U.CGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|EU686608.1|:c9613-9494       .CC.CGGUGGUC..AU.AGG.AGA.G.GGG.AC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gb|GU474882.1|:11471-11587      .UU.UGGUGACC..AU.AAA.GCA.G.UGG.CC.CGAC.CCGA..U.U.CCAUUCCGAAC
+gi|507148636:6-125              .GC.UGGCGACC..AU.AGC.AAG.A.GUG.AA.CCAC.CUGA..U.C.CCUUCCCGAAC
+gb|AY744396.1|:c42608-42492     .CC.CGAUGACA..UU.AGC.AAG.U.GUG.UC.CCAC.CUGA..U.U.CCAUCCCGAAC
+gb|EF157669.1|:c10980-10866     .CU.UGACGACC..AU.AGC.GAG.G.UGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|GU474853.1|:24795-24910      .UC.UGGUGGCC..AU.AGC.AAA.G.UGG.CA.CCAC.CCGG..U.C.CCAUCCCGAAC
+gi|452192271:1-117              .UA.CGGCGGUC..AU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.ACAUUCCGAAC
+gi|452192088:1-115              .CU.UGGUGGUU..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|4468257:2-115                .CC.UGACGACC..AU.AGC.GAG.G.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|452192393:1-115              .CU.UGGUGACC..AU.AGC.GUC.U.GUG.AC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|GU452709.1|:181-299          .UC.CGGUGGCG..AU.GCGgUUA.G.GGG.UC.ACAC.CCGU..A.C.ACAUCCCGAAC
+gi|452192161:1-114              .--.UGGUAGCC..AU.AGC.GGA.G.AGG.AC.ACAC.CCGA..U.U.CCAUUCCGAAC
+gi|526641879:3-119              .CU.UGGCGGCG..AU.AGU.GCA.G.UGG.AC.CCAC.CUAA..U.U.CCAUGCCGAAC
+gb|CP012370.1|:152653-152770    .UC.UGGUGGUA..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|485099261:3-120              .CC.UGGUGGUC..UU.AGC.GAG.G.AGC.CU.GAAC.CCGA..U.C.CCAUCCCGAAC
+gb|AY763503.1|:255-370          .UU.UGGCGACU..AU.GGC.GGA.G.GGG.UU.CCAC.GCGU..U.C.CCAUCUCGAAC
+gi|451992008:1-114              .CC.CGGUGACC..AU.AGC.AAG.U.UGG.AA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gb|CP007501.1|:37249-37364      .CC.CGGUGACC..AU.AGC.AAG.U.UGG.AA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|452192279:1-114              .--.UGGUGGCA..AU.AGC.GUC.G.UGG.CC.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|451991923:1-113              .--.CGGUGGCG..AA.AGA.GCG.A.GGG.UA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192123:1-113              .--.UGGCGGCA..AU.AGC.GCG.A.UGG.AA.CCAC.CUGU..A.C.CCAUGCCGAAC
+gi|451991659:3-121              .GU.CGGUGGUU..UU.UGC.GGU.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|451991699:1-112              .--.CGGUGAUU..AU.AGC.AAG.A.GGG.AA.ACGC.CUGG..U.U.CCAUUCCGAAC
+gi|452192153:1-116              .--.CGGCUGUC..AC.AGC.GGC.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|452192134:2-120              .UA.CGGCGGUC..AU.AGC.GUC.G.AGG.AA.ACGC.CCGG..U.U.CCAUUCCGAAC
+gi|451991872:2-120              .UA.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|662020002:3-118              .UU.CGGUGGUG..UU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192175:1-116              .--.CGGUGGUC..AU.AGC.GGA.G.GGG.AC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192364:1-114              .--.UGGUGGUC..AU.AGC.GAG.A.GCA.AA.ACAC.CUGG..U.C.CCAUCCCGAAC
+gi|485099236:1-117              .UC.UGGUGGUG..AU.UGC.GGA.G.GGG.UA.ACAC.CUGU..U.C.CCAUCUCGAAC
+gi|662020013:1-113              .--.GGGUGAUG..AU.AGC.GGC.G.GGG.AU.ACAC.CUCU..U.C.CCAUUCCGAAC
+gi|67003493:956-1069            .CC.UGGUGGCU..AU.GUC.GGA.G.GUU.CC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gi|485099268:1-114              .--.UGGUGGUU..AU.GGC.GGA.G.UGA.AC.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192129:1-116              .--.CGGUGGUC..AU.UGC.GGU.U.GGG.GA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|452192471:2-117              .CC.UGGCGGCC..AU.AGC.GAG.U.UGG.CA.CCAC.CUGU..U.C.CCAUCCCGAAC
+gi|297374631:c14625-14508       .GC.CGGUGGCG..UU.ACC.AGA.G.AGG.CU.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|S39231.1|:2-119              .CC.UGGUGACU..UU.AGC.GAA.G.UGA.UN.AGAC.CGUA..U.C.CCAUCCCGAAC
+gi|1045040:2-119                .--.CGGCGGUC..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gb|M34759.1|MAGRRAA:1-118       .CU.UGGUGGCC..AU.AGC.GAG.C.GUG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|507148570:1-110              .UA.AGGUGGUU..AU.AGC.AAU.G.UGG.AU.CCAC.CUCU..U.U.CCAUUCCGAAC
+gi|451991805:1-114              .-U.AGGUGGCU..AU.AGA.GAG.A.GGG.AA.ACGC.CUGG..U.C.CCAUUCCGAAC
+gi|861108:1-119                 .UC.CGGUGGUG..AU.AUC.AAG.A.AGG.CU.ACAC.CCGA..U.C.CCAUACCGAAC
+gi|662019990:1-117              .GU.CGGUGGUU..AU.AGC.AUU.G.GGG.AC.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192509:4-120              .GU.CGGUGGUU.gUU.AGC.GGU.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|452192222:1-114              .--.-CGUGCCC..AU.AGC.GGC.G.UGG.AA.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991663:1-118              .UA.CGGCGGUC..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192499:1-117              .UA.CGGCGGCC..AU.AGC.GGC.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991825:1-114              .CC.UGAUGAUC..AU.AGC.GAG.U.CGG.UC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|662019921:1-115              .--.UGGCGGCA..AC.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|451991794:1-112              .UC.UGACGACC..AU.AGC.AGA.G.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|452192465:1-115              .UC.UGGUGACU..AU.ACC.GGA.G.GGG.UA.CCAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP001078.1|:c3376625-3376505 .UC.UGGUGAUG..AC.GGC.GUA.G.AGG.UA.ACAC.UCCU..C.U.CCAUUCCGAAC
+gi|406718232:c3565558-3565438   .UC.UGGUGAUG..AC.GGC.GUA.G.AGG.UA.ACAC.UCCU..C.U.CCAUUCCGAAC
+gi|451991649:1-117              .UC.UGGUGAUU..AU.GGC.UUG.A.AGG.UA.ACAC.CCGU..U.C.CCAUGCCGAAC
+gb|L37448.1|ROORRB:3-118        .CG.UUGCGAUG..CA.UGU.GGA.G.UGU.AU.ACAC.CCGA..U.C.CCAUCGCGAAC
+gb|CP012371.1|:c1248792-1248677 .CU.UGGCGGUC..AU.AGC.GCU.U.UGG.AC.CCAC.CCCU..U.C.CCAUCUCGAAC
+gi|451991927:2-118              .CU.UGGUGGUU..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|967041:2-119                 .UA.CGGCGGCC..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991996:1-117              .UC.CGGUGACA..AU.GGC.GGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991610:1-112              .--.-GGUGGCU..AU.GCC.GAG.G.GGG.UC.ACAC.CCGU..U.C.CCAUCUCGAAC
+gb|CP005488.1|:292160-292273    .UA.GGGUGGUU..AU.AGC.AAU.G.UGG.CC.CCAC.CUCU..U.C.CCAUCCCGAAC
+gi|451992033:1-106              .--.CGGCGACU..UU.UUC.CCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192493:c107-1             .--.-GGUGGUU..UU.AGC.GGU.G.GGG.CU.-CAC.CUGU..U.C.CCAUUCCGAAC
+gi|452192323:1-113              .CC.UGAUGACC..AU.AGC.GAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|4468788:2-115                .CC.UGAUGACC..AU.AGC.GAC.G.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|330862872:c7391-7275         .CC.UGGCGGCC..AU.AGC.GCG.G.UGG.AC.CCAC.CUGA..A.U.CCAUGCCGAAC
+gb|DQ267496.1|:5711-5826        .UC.CGGUGGCC..AU.AGC.GGA.G.GGG.UC.ACAC.CCGA..U.C.UCAUCCCGAAC
+gi|451992009:1-113              .CC.UGACGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|452192140:1-113              .CU.UGGUGGCU..UU.UGC.GGG.G.UUU.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gb|EU644449.1|:4888-5001        .CU.UGGUGGCU..UU.UGC.GGG.G.UUU.CU.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991910:3-121              .CC.UGGUGGCC..AU.AGC.GAG.G.GCC.AUuACAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP006651.1|:34556-34672      .UC.UGGUGGCC..AA.AGC.ACG.A.GCG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991656:2-119              .CC.UGGUGGCC..AU.GGC.GGG.GaUAG.AC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192460:1-115              .CU.UGGUGGUU..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|452192236:1-113              .--.-GGUGACG..AG.AGC.GGA.G.GGG.AA.ACAC.CUGU..G.C.CCAUCCCGAAC
+gi|452192436:1-115              .--.UAGUGGCU..AU.GGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991899:1-117              .CC.UAGUGGUG..AU.AGC.GGA.G.AGG.AA.ACAC.UCGU..U.C.CCAUCCCGAAC
+gi|451991993:1-114              .--.-GGUGACG..AU.GGC.GGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148440:2-120              .UU.CGGUGGUU..UU.AGC.GUC.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|507148615:1-117              .UG.CGGCGGCC..AU.GGC.CCA.G.GGG.AG.ACGC.CCGG..A.C.CCAUUCCGAAC
+gi|451991743:1-117              .UU.CGGUGGUC..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gb|M16170.1|AUTRRA:2-119        .UU.CGGCGGCC..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.U.AUAUUCCGAAC
+gi|452192365:1-116              .GU.CAGCGGUC..AC.AGC.AGG.G.GUG.GC.ACGC.CCGG..A.A.CCGUUCCGAAC
+gi|530669580:c2208543-2208427   .CC.UGGCGGCC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192115:1-117              .GC.CGGUGACC..AU.ACC.GUG.A.GGG.GC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192118:3-120              .CU.UGGUGGUU..AU.GGC.GGA.G.UGA.AC.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|507148482:1-117              .UC.CGGUGGCC..AU.AGC.GGA.A.GGG.AA.ACAC.CCGG..U.C.CCAUACCGAAC
+gi|662019992:1-115              .CC.UGGUGGCG..AU.AGUaUAG.C.GGG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gb|U78300.1|TCU78300:342-457    .CC.UGAUGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|636795890:259502-259616      .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451992010:1-115              .CC.UGGUGACU..UU.UGC.AAA.G.UGA.UC.AGAC.CCGA..U.C.CCAUCCCGAAC
+gi|526641903:2-116              .UU.CGGUGGUU..AU.AGC.GUC.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451992025:1-113              .--.CGGUGGCA..AU.AGC.GGA.G.GGG.CA.ACAC.CUGU..U.C.CCAUUCCGAAC
+gi|452192110:1-116              .--.CGGUGGCG..AA.AGA.GCG.A.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192184:1-110              .--.UGGUGCCU..AU.AGC.GCG.G.GGG.AA.ACAC.CUCU..U.C.CCAUUCCGAAC
+gi|485099259:1-114              .-U.UGGUGUCC..AU.GGA.GGA.G.GGG.GU.ACAC.CCGA..U.A.CCAUCCCGAAC
+gi|451991877:1-117              .CU.CGGUGGCU..AU.GCC.GAG.G.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991798:2-119              .CC.UGGUGGUU..AU.GGC.GGG.G.UGG.CU.GCAC.CCGU..U.C.CCUUUCCGAAC
+gb|CP007440.1|:1428619-1428734  .CC.UGGUGGCA..CU.AGC.GGG.G.GGC.CU.GAAC.CCGA..U.C.CCAUCUCGAAC
+gi|451991714:2-120              .UU.CGGUGAUC..AU.GGC.GAG.A.GGG.AA.ACAC.CCGG..C.U.CCAUUCCGAAC
+gi|507148555:1-109              .UC.CGGUGGCA..AU.AGC.GGA.G.GUU.AA.AAAC.CCGU..U.C.CCAUACCGAAC
+gi|452192336:1-109              .UC.CGGUGGCG..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|507148601:1-116              .--.CGGUGGUU..AU.AGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|391827:2-119                 .UA.CGGCGGUU..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG..U.U.ACAUUCCGAAC
+gb|CP008936.1|:314708-314825    .CC.UGGCUGCC..AU.AGC.GGA.G.GUG.UC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192360:1-110              .UC.AGGUGCCU..AU.AUC.GGC.G.GUG.UC.-CAC.CUCU..U.C.CCAUCCCGAAC
+gi|451991655:2-116              .UU.CGGCGGCC..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.A.ACAUUCCGAAC
+gi|391696:2-119                 .UA.CGGCGGUU..AU.GGC.GGA.G.GGG.AA.ACAC.CCGG..U.U.ACAUUCCGAAC
+gi|452192244:1-116              .--.CGGUGGUC..AC.AGC.GGU.A.GGG.AA.ACGC.CCGG..A.C.CCAUCCCGAAC
+gi|451992043:1-115              .UC.UGGUGGCU..AU.ACC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|507148565:1-108              .--.-GGUGAUU..AU.AGC.GAU.A.GGG.CU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991804:1-112              .--.-GGUGGCU..AU.GCC.GAG.G.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192539:1-116              .--.CGGUGGCU..AU.GGC.AAA.G.AGG.UC.ACAC.CCGU..A.C.CCAUCUCGAAC
+gi|507148515:1-114              .--.UGGUGAUU..AU.AGA.GAA.G.UGG.AA.AUAC.CCGG..C.U.CCAUUCCGAAC
+gb|EF667147.1|:21-137           .GC.UGGUGGUU..AA.AGA.GAA.G.UGG.AA.AUAC.CCAG..C.C.CCAUUCCGAAC
+gi|452192262:1-108              .UA.AGGUGGUU..AU.AGC.AAA.A.GGG.CU.-CAC.CUCU..U.A.CCAUUCCGAAC
+gi|452192260:1-117              .--.CGGUGGUA..AU.CGC.GGA.G.GGG.CU.ACAC.CUGU..U.C.CCAUUUCGAAC
+gi|451991969:1-116              .CC.UGGCGGCA..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|507148538:1-111              .--.AGGUGGUU..AU.UGC.GGC.G.GGG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|507148541:1-111              .--.AGGUGGUU..AU.UGC.GUC.G.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|507148578:1-111              .--.AGGUGGUU..AU.UGC.GGC.G.GGG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192377:1-111              .UA.AGGUGGUU..AU.AGC.GUU.G.GGG.AU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192448:1-111              .UA.AGGUGGUU..AU.AGC.ACG.A.GGG.AU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|507148495:1-115              .CC.UGAUGACC..AU.AGC.GAG.U.CGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991723:2-116              .CC.UGAUGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991876:1-117              .UA.CGGCGGCC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192194:1-114              .--.UGGUGACA..AU.GGC.AAG.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|662020016:1-115              .CU.UGGUGGCC..AU.AGC.GUC.U.GUG.AC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|662019973:1-114              .--.UGGUGGUU..AU.AGC.GGG.G.AGC.CU.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|4468059:2-115                .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|452192537:1-110              .--.UGACGACC..AU.AGC.GGU.C.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192491:1-112              .--.UGACGACC..AU.AGC.GGC.C.UGG.UA.CCAC.CUGA..U.C.CCAUCUCGAAC
+gi|451991667:1-109              .UU.GGGUGGCG..AU.GCC.GGA.G.GGG.AU.-CAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192199:1-115              .UG.CGGUGGUC..AU.GGC.UCA.G.GUG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|507148465:1-117              .UU.UGGUGGUU..AU.AGC.GAG.A.GCA.AA.GCAC.CUGG..U.C.CCAUCCCGAAC
+gi|452192468:1-115              .-C.CGGUGGCU..AU.GGC.GGA.G.GGG.AA.ACAC.CUGU..U.C.CCAUUCCGAAC
+gi|452192402:1-116              .AC.UGGUGGCU..AU.GGC.GGA.G.GUG.CA.ACAC.CCGU..A.C.CCAUUCCGAAC
+gi|452192379:1-109              .-U.UGGUGGUU..AU.AGC.GAG.C.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991992:5-123              .CC.GGGUGCCG..AU.ACUgGGG.C.GGG.AA.ACAC.CCGG..U.U.CCAUUCCGAAC
+gb|KP239990.1|:c22054-21936     .CC.GGGUGCCG..AU.ACUgGGG.C.GGG.AA.ACAC.CCGG..U.U.CCAUUCCGAAC
+gi|452192274:1-117              .UC.CGGUGGUA..AU.AGC.GGA.G.GGG.CA.ACAC.UUGU..U.C.CCAUCUCGAAC
+gi|452192294:1-117              .UC.CGGUGGUA..AU.UGC.GGA.G.GGG.UA.ACAC.UUGU..U.C.CCAUUUCGAAC
+gi|451992022:1-118              .UC.CGGUGGCA..AU.GGC.AGA.G.GUG.CC.ACAC.CCGU..U.C.CCAUCUCGAAC
+gb|L24488.1|HBTRRNA5S:2-119     .CU.UGGUGGUU..AU.GGC.GGA.G.UGA.AU.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|47147:1-117                  .CU.UGGCGGUC..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|1045273:2-119                .UU.CGGUGGUC..AU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991692:2-119              .UU.CGGUGGUC..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192225:1-115              .--.CGGCGGCC..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..C.U.CCAUUCCGAAC
+gi|452192182:1-115              .--.CGGCGGCC..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192410:2-117              .UA.CGGCGGCU..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..C.C.CCAUUCCGAAC
+gi|452192230:1-115              .--.CGGCGGUC..AU.AGC.AGC.A.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|452192289:1-113              .--.CGGUGAUU..AU.AGU.GAG.A.GGG.AA.ACGC.CUGG..U.U.CCAUUCCGAAC
+gb|M16174.1|PISRRA:2-120        .UA.CGGCGGCC..AU.AGC.GGC.G.GGG.AA.ACAC.CCGG..U.C.CCAUGCCGAAC
+gb|M16171.1|CURRRA:2-119        .UC.CGGUGGUG..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.G.AGAUUCCGAAC
+gi|451991709:1-115              .--.CGGCGGCC..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.C.ACAUUCCGAAC
+gi|1045203:2-119                .UA.CGGUGGUU..AU.AGC.GAA.G.AGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|M29856.1|BTTDNA:1-115        .UC.UGGUGACC..AU.AGC.GGA.G.GGG.AU.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148590:1-116              .UA.CGGCGGUC..AU.AGC.GGG.C.GGG.GU.CCAC.CCGG..U.C.CCAUUCCGAAC
+gi|452192164:1-117              .--.CGGUGGUU..AU.GGC.GGA.G.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gb|AF116563.1|:6176-6294        .UU.CGGUGGUU..AU.AGC.GGU.G.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|391775:1-118                 .UG.UGGUGGUU..AU.UGC.UGG.A.GGG.UC.ACAC.CCGG..U.C.UCUUUCCGAAC
+gi|452192205:1-115              .--.CGGUGGCC..AU.AGC.GGA.A.GGG.AA.ACAC.CCGG..U.C.ACAUUCCGAAC
+gi|452192185:1-116              .--.CGGCGGUU..AU.GGC.GAA.G.GGG.AA.ACAC.CCGG..U.U.ACAUUCCGAAC
+gi|391740:2-119                 .UA.CGGCGGUU..AU.AGC.GGU.A.GGG.AA.ACAC.CCGG..U.U.ACAUUCCGAAC
+gi|391601:2-120                 .UU.CGGUGGUU..UU.GGC.GAG.G.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|452192529:2-119              .UU.CGGUGGUC..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.U.ACAUUUCGAAC
+gi|24427855:5230-5347           .UU.CGGUGGUC..AU.AGC.GUA.G.GGG.AA.ACGC.CCGG..U.U.ACAUUUCGAAC
+gi|126347282:c1469819-1469702   .UU.CGGUGGUC..AU.AGC.GUU.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|507148604:1-115              .--.CGGUGGUC..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gb|M59335.1|STMJL855S:2-119     .UU.CGGUGGUC..AU.AGC.GUG.A.GGG.AA.ACGC.CCGG..U.U.ACAUCCCGAAC
+gi|451991722:2-120              .UU.CGGUGGUC..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192444:1-116              .--.CGGUGGUC..AU.AGC.GGA.G.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192204:1-115              .--.CGGCGGUC..AU.GGC.GAG.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|967042:2-119                 .UU.CGGUGGUC..AU.GGC.GAG.A.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192513:2-120              .UU.CGGUGGUU..UU.GGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.UCAUUCCGAAC
+gi|451991818:1-117              .UU.CGGUGGUU..UU.GGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.UCAUUCCGAAC
+gi|452192144:3-121              .UU.CGGUGGUU..AU.AGC.GGC.G.GGG.AC.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|1045222:2-120                .UU.CGGUGGUU..AU.AGC.GGU.G.GGG.AC.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|1045216:2-120                .GU.CGGUGGUC..AU.GGC.GGA.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|967055:2-119                 .UA.CGGCGGCC..AU.AGC.GAA.G.GGG.AA.AUAC.CCGG..U.C.CCAUCCCGAAC
+gi|451991650:2-119              .GU.CGGUGGCG..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|1045287:3-121                .GU.CGGUGGCG..AC.AGC.GGG.G.AGG.GU.CCGC.CCGG..U.C.CCAUACCGAAC
+gi|2198532:5734-5852            .UA.CGGCGGCC..AU.AGC.GGA.G.GGG.AAaCCGC.CCGG..U.C.CCAUUCCGAAC
+gi|662020008:1-115              .--.CGGCGGCU..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|8250508:28-145               .UU.CGGUGGUU..AU.AGC.GGC.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991875:3-116              .UA.CGGCGGUC.cAU.AGC.GGC.A.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gb|CP009483.1|:c1403850-1403736 .UA.CGGCGGCC..AC.AGC.GAC.A.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|967054:3-116                 .UA.CGGCGGUC.cAU.AGC.GGC.A.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|507148600:1-115              .--.CGGUGGCC..AU.AGC.GAG.A.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|507148471:1-117              .CA.CGGUGGCC..AU.GGC.GAG.A.GGG.AA.ACAC.CCGG..A.C.CCAUCCCGAAC
+gi|485099223:1-116              .--.CGGUGGCC..AU.GGC.UGG.A.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|451991620:2-119              .UC.CGGUGGCC..AU.AGU.GGA.A.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|756351692:c165-48            .UU.CGGUGGCC..AU.AGC.GAG.A.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gb|CP008796.1|:c1295779-1295664 .-C.GGGUGCCU..AU.ACC.GGA.G.GGG.CC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|662019996:1-113              .--.CAGUCACA..AU.AGC.AAG.G.AGG.AU.ACAC.CUGU..U.C.CCAUUCCGAAC
+gi|507148474:1-117              .--.CGGUGGUU..UU.AGC.GGU.G.GGG.UC.ACGC.CCGG..U.C.CCUUUCCGAAC
+gi|451991745:3-120              .GU.CGGUGGUG..AU.AGU.AGC.A.GGG.AA.ACGC.CCGG..U.C.CCUUUCCGAAC
+gb|M16204.1|CORRRAXB:3-118      .-U.CGGUGGUU..AU.AGC.GGU.G.GGG.UC.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|967057:2-119                 .UA.CGGCGGUC..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|452192223:1-115              .--.CGGCGGUC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|967058:2-120                 .UA.CGGCGGUC..AC.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUACCGAAC
+gb|M16172.1|CFIRRA:2-119        .UA.CGGCGGUC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|39490:2-120                  .UA.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|757805207:c1933401-1933286   .UG.CGGCGAUC..AG.AGC.CUA.G.GUG.AA.ACGC.CCGG..U.U.CCAUUCCGAAC
+gi|781876604:c1571253-1571138   .UG.CGGUGAUC..AG.AGC.CUA.G.GUG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|507148472:1-117              .UG.CGGCGGCC..AU.GGC.CCA.G.GUG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|507148609:1-117              .UG.CGGCGGCC..AU.GGC.CCA.G.GAG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|118764602:c1525337-1525222   .UG.CGGUGAUC..AU.AGC.CUA.G.GUG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|CP010437.1|:c1617392-1617277 .UG.CGGUGAUC..AU.AGC.CUA.G.GUG.AG.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991867:1-117              .UA.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gb|CP007003.1|:1078475-1078593  .GA.CGGUGGCA..AU.AGC.GGU.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gi|451991990:2-120              .UA.CGGCGGCC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..A.C.CCAUCUCGAAC
+gi|451991643:1-110              .--.-GGUAGUU..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|16415123:c148470-148353      .UC.UGGUAGUU..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148522:1-115              .--.UGGUAGUU..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148503:1-116              .UC.UGGUAGUU..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|AF160963.1|AF160963:480-597  .UC.UGGUAGUU..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|S73542.1|:2-119              .UU.CGGCGGCC..AU.AGC.GAG.A.GGG.AA.ACGC.CCGG..U.C.ACAUUCCGAAC
+gi|452192557:1-114              .UG.UGGUGGUG..AA.GGC.GAA.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|39765:1-117                  .UU.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|452192384:1-115              .UC.UGGUGGCG..AU.ACC.GGA.G.GGG.GU.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192390:1-115              .UC.UGGUGACG..AU.ACC.GGA.G.GGG.AU.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192433:1-114              .UC.UGGUGAUA..AU.GCC.GGA.G.GGG.UU.CCAC.CCGU..U.C.CCAUACCGAAC
+gi|451991844:1-115              .UC.UGGUAAUU..AU.GGC.UUG.A.AGG.UA.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|451991810:1-115              .UC.UGGUGGUA..AU.AGC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148488:1-113              .--.UGGUGGAA..AU.GAC.GAG.A.UGG.CC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|452192273:1-109              .UC.CGGUGGCA..AU.AGC.GGA.G.GUU.AA.AAAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991905:1-117              .UC.UGGUGGCA..AU.AAC.GAG.A.AGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991596:1-117              .UC.UGGUGAUU..AU.AGC.UAG.A.AGG.UA.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|662019925:1-117              .UC.UGGUGAUG..AU.GCUcUUU.A.GGG.UA.ACAC.CCGU.uU.U.CCAUUCCGAAC
+gi|507148469:1-115              .UC.CAGUGAUU..AU.GCC.UGG.U.AGG.UA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gb|CP002410.1|:c2758965-2758850 .UC.UGGUAAUU..AU.GGC.UUG.A.AGG.UA.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|451991560:1-117              .UC.CGGUGACC..AU.AGC.UUG.G.UUG.UA.ACAC.CCGU..U.C.CCAUACCGAAC
+gb|M36157.1|CLORRAAF:1-116      .DC.AGGUGGCG..AU.GGC.GGA.A.AGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|CP007739.1|:254201-254315    .CU.UGGUGACG..AU.GGC.GAG.A.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|451991748:1-104              .--.--------..--.-GC.GGA.G.GGG.AA.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192278:1-116              .UU.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|451991707:1-113              .UC.UGGUGACA..AU.AGC.GAA.G.AGG.UC.ACAC.CUGU..U.C.CCAUACCGAAC
+gi|485099279:1-115              .--.UGGUGAUG..AU.GGC.AGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|507148473:1-117              .CC.UAGUGACA..AU.AGC.GGA.G.AGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991966:1-107              .--.--GUGAUG..AU.GGC.AAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|452192317:1-116              .UC.CAGUGACG..AU.AGC.GGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|507148519:1-113              .--.UGGUGGCG..AU.AGC.GGA.G.GGG.UU.CCAC.ACGU..A.C.CCAUCCCGAAC
+gb|CP010587.1|:c2342-2226       .UC.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|451991759:1-116              .UU.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|507148493:1-116              .UC.CGGUGAUG..AU.GGC.GGA.A.AGG.UC.ACAC.CCGA..A.C.ACAUCCCGAAC
+gi|451991606:1-115              .UU.UGGUGAUG..AU.GGC.AGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|507148463:1-115              .UC.UGGUGAUG..AU.GGC.GGA.G.GGG.AC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|451991607:1-116              .UU.UGGUGAUG..AU.GGC.AGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUACCGAAC
+gb|EU723616.1|:258-373          .UC.UGGUGGCG..AU.GGC.GAA.G.GGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192408:1-113              .--.UGGUGACC..AU.AGC.GGA.G.GGG.CA.ACAC.CCGU..A.C.CCAUCCCGAAC
+gb|K03158.1|BACRBB:21-137       .UU.UGGUGGCG..AU.AGC.GAA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|507148585:1-114              .--.CAGCGACC..AU.GGC.AGG.G.GAG.GC.ACAC.CUGG..U.C.CCAUUCCGAAC
+gi|45565:1-116                  .UC.CAGUGAUG..AU.GGC.AAA.G.AGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|485099272:1-113              .UC.UGGUGACA..AU.GGC.AAG.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|451991666:1-115              .UC.UGGUGACA..AU.GGC.AAG.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|451991767:1-113              .UC.UGGUGACA..AU.GGC.AAG.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|662019936:1-111              .--.UGGUGACA..AU.GGC.AAG.G.AGG.UC.ACAC.CUGU..U.C.CCAUGCCGAAC
+gi|452192147:3-120              .UU.CGGUGGUC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.U.ACAUUCCGAAC
+gi|452192127:2-120              .UA.CGGCGGUC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.U.CCAUUCCGAAC
+gb|K02682.1|MLURRAA:1-119       .UC.UGGCGGCC..AU.AGC.GUG.G.GGG.AA.ACGC.CCGG..U.C.CCAUCCCGAAC
+gb|GU137314.1|:62-180           .UC.CGGUGGCG..AU.GCGgUUA.G.GGG.UA.ACAC.CCGU..A.C.ACAUCCCGAAC
+gi|451991676:1-116              .--.UGGUGAUA..AA.AGC.AAG.A.GGG.AU.ACAC.CUGU..A.C.CCAUGCCGAAC
+gi|952974062:1784173-1784288    .-C.CGGUGGUC..UU.GCC.GGA.G.GGG.CC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991788:3-118              .CU.UGGUGGUC..AU.AGC.ACU.U.UGG.AC.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991797:1-113              .-C.UGGUGGCC..AU.AGC.GAG.U.AGG.CC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991785:1-108              .UA.CGGCGACU..AU.UUC.CCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451992028:1-106              .--.CGGCGACU..AU.AUC.CCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991909:1-107              .UA.CGGCGACU..AU.UUC.CCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451992024:1-105              .--.CGGCGACU..AU.UUC.CCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gb|M33892.1|CHBRRAA:1-109       .UA.CGGCGACU..UU.UUC.CCA.G.GUG.AU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991809:1-115              .CC.UGGUGGUC..AU.UGC.GGG.C.UCG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192556:4-121              .CU.UGGUGGUC..AU.GGC.GAA.C.AGG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|46403:3-120                  .CC.UGGUGGUC..AU.UGC.GGG.C.UCG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192293:1-108              .CC.UGGUGAUU..AU.AGC.GGA.A.CGC.CC.CCAC.UCGA..U.C.CCAUCUCGAAC
+gb|CP000143.2|:5111-5227        .UC.UGGUGGCC..AU.AGC.ACG.A.GCA.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|507148457:2-118              .UU.UGGUGGUC..AU.AGC.GUU.G.GCU.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991898:1-117              .CC.UGGCGACC..AU.AGC.GAG.C.GGG.AA.CCAC.CCGA..A.C.CCAUUCCGAAC
+gb|CP011310.1|:c2714779-2714663 .CU.UGGUGGCC..AU.AGC.GCC.U.GUG.AC.CCAC.CCGA..U.C.CCAUCUCGAAC
+gb|M35563.1|THTRR5SX:4-120      .CC.UGGUGUCC..AU.AGA.GCA.C.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|452192131:1-110              .UA.AGGUGGUU..AU.AGU.CAA.A.GG-.UC.UCAC.CUCU..U.A.CCAUUCCGAAC
+gi|452192334:1-106              .UU.GGGUGAUU..AU.AGC.UGC.A.GGG.CU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192400:1-109              .AA.UGGUGGUC..AU.AGC.GAG.G.GGG.AG.ACAC.CUUU..U.C.CCAUUCCGAAC
+gb|M33890.1|SPGRRAA:3-121       .CU.CGGUGGCC.uAU.AGC.AGC.A.GGG.AA.-CGC.CCGG..A.C.CCAUUCCGAAC
+gi|452192304:1-110              .UA.UGGUGACU..AU.GGC.GGU.G.GGG.UA.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|507148572:1-110              .--.GGGUGAUU..AU.AGC.AUA.G.GGG.UA.-CAC.GUCU..U.U.CCAUUCCGAAC
+gi|452192451:1-109              .UA.AGGUGGUU..AU.UGC.GGC.G.GGG.CU.-CAC.CUCU..U.C.CCAUUUCGAAC
+gi|452192466:1-110              .UC.AGGUGCCU..AU.AUC.GGC.G.GUG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gb|M33889.1|FBCRRAA:1-115       .UC.UGGUGACG..AU.GGC.GGA.G.GGG.AC.ACAC.CCGU..U.C.CCAUACCGAAC
+gi|451991928:1-106              .--.AGGUGGUU..AU.UGC.GGC.G.GGG.CU.-CAC.CUCU..U.C.CCAUCCCGAAC
+gi|507148549:1-108              .--.UGGUGGCU..AU.AGC.GUU.G.GUG.UU.-CAC.CUCU..U.C.CCAUUUCGAAC
+gi|452192142:4-112              .--.-GGUGCCU..AU.AUC.GGU.G.GUG.UC.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192345:1-110              .UA.AGGUGGCC..AU.GGC.GAU.G.AGG.CU.-CAC.CCCU..U.U.CCAUUCCGAAC
+gi|452192241:1-112              .-C.UGAUGACU..AU.AGC.AAG.U.UGG.UA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991789:2-116              .--.UGGUGGUA..AU.AGC.GGA.A.GUG.GU.ACAC.CCAG.cU.U.ACAUUUCGAAC
+gi|452192282:1-118              .CC.UCGGGACC..AU.AGC.GGA.G.GGG.AA.ACAC.CCGG.uU.U.CCAUUCCGAAC
+gi|452192181:1-114              .--.UGGUGUCC..AU.AGA.GCG.G.UGG.AA.CCAC.CUGU..U.C.CCAUCCCGAAC
+gi|452192237:1-113              .CC.UGAUGACC..AU.GGC.GAA.C.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|452192238:1-113              .--.UGGUGGCC..AU.UGC.GAG.G.AGC.CU.GAAC.CCGA..U.C.CCAUCCCGAAC
+gb|M11540.1|TFERRATTH:2-116     .UC.UGACGACC..AU.AGC.AGA.G.UGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gi|451991865:1-113              .CU.UGGCGGCC..AU.AGC.GCU.U.UGG.AC.CCAC.CUUU..U.C.CCAUCCCGAAC
+gi|451991635:3-116              .CU.UGGCGGCC..AU.AGC.GCU.U.UGG.AC.CCAC.CUUU..U.C.CCAUCCCGAAC
+gi|452192354:1-113              .CU.UGGCGGUC..AU.AGC.ACU.U.UGG.AC.CCAC.UUCU..U.C.CCAUCCCGAAC
+gi|452192128:1-113              .-C.UGGUGACC..AC.GGC.GGA.G.GGG.AA.CCAC.CCGA..U.U.CCAUUCCGAAC
+gi|452192311:1-117              .UU.CGGUGGCC..AU.AGC.GAA.G.AGG.UC.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|662019911:1-115              .UU.CGGUGGCU..AU.AGC.ACA.G.AGG.UC.ACAC.CUGU..U.C.CCAUCUCGAAC
+gi|451991895:1-113              .-C.UGGCGUCC..AU.GGA.GGA.G.GGG.GU.ACAC.CCGA..U.C.CCAUUCCGAAC
+gi|507148536:1-110              .--.-UGCGGCC..AU.UGA.GGA.G.AGG.UC.ACAC.CCGA..C.C.CCAUUCCGAAC
+gb|CP006585.1|:1257726-1257839  .-C.UGGUGGCC..AU.UGA.GGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192450:1-113              .-C.UGGCGGCC..AU.AGA.GGU.G.GGG.CC.ACAC.CCGA..U.C.CCAUUCCGAAC
+gi|662019945:1-111              .--.UGGUGGCC..AU.UGA.GGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|34483186:c333378-333264      .UC.UCGUGCCU..AU.AGA.GGA.G.AGG.CU.ACAC.CCAG..C.U.CCAUUCCGAAC
+gb|JX424617.1|:c548-437         .--.AGGUGGUU..AU.UGU.GGU.G.GGG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192268:1-115              .UU.CAGCGGUU..AU.CGA.GUG.A.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gb|GU452708.1|:93-211           .UC.CGGUGGCG..AU.GCGuCCU.G.GGG.AG.ACAC.CCGU..A.C.CCAUCCCGAAC
+gi|451991800:1-101              .--.------CU..AU.AGC.ACG.A.GGG.AU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991799:1-102              .--.------CU..AU.AGC.ACA.A.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192505:1-102              .--.-----AUU..AU.AGC.ACA.A.GGG.UU.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|451991558:1-113              .-U.UGGUGAUA..AU.AGA.GAG.A.GGG.AA.ACAC.CUGA..C.A.CCAUUCCGAAC
+gi|451991754:2-119              .CU.UGGUGGUU..AU.GGC.GGA.G.CGA.AC.GCAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP003398.1|:259645-259761    .CU.UGGUGGUC..AU.AGC.AUG.A.GUG.AA.ACAC.ACGA..U.C.CCAUCCCGAAC
+gi|452192506:2-119              .GU.UGGUGGUA..AU.AGC.AGA.A.GUG.AU.ACAC.CCAG..C.U.ACAUUUCGAAC
+gi|507148510:1-115              .--.UGGCGGCG..AU.AAU.GCG.G.UGG.GC.CCAC.CUGA..A.U.CCAUCCCGAAC
+gi|45880:2-118                  .CC.UGGCGGCC..AU.AGU.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gb|M16533.1|VIBRRABA:2-118      .UC.UGGAAACC..AU.AGC.AUU.G.UGG.CC.CCAC.CUGA..U.C.CCAUCUCGAAC
+gi|662019975:1-113              .--.UGGCGGCC..AU.AGC.GCC.G.UGG.AA.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|38869:2-118                  .CC.UGGCGGCC..AU.AGC.GCC.G.UGG.AA.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|451991756:2-118              .CC.UGGCGGCC..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|451991660:2-118              .CU.UGGCGGCC..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..U.C.CCAUGCCGAAC
+gi|675820153:120-237            .CC.UGGCGGCC..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|507148512:1-115              .--.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|507148513:1-115              .--.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|485099266:1-116              .CC.UGGCGGCG..AU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|451991968:1-116              .CC.UGGCGGCC..GU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|451991600:3-115              .--.UGGUGGCC..AU.AGC.GAG.G.UGG.UC.CCAC.GCCU..U.C.CCAUCCCGAAC
+gi|451991949:1-114              .--.UGGUGGUU..AU.GGC.GGA.G.CGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|451991930:1-114              .--.UGGUGGCC..AU.UGC.GGG.G.AGC.CU.GCAC.CCGA..U.C.CCAUCCCGAAC
+gb|M11546.1|TFERRATA:3-119      .CC.UGGUGGCC..AU.UGC.GGG.G.GGC.CC.GCAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991638:1-115              .CC.UGACGACC..AU.AGC.AAG.G.UGG.CC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991657:1-115              .CU.UGACGACC..AU.AGC.AAG.G.UGG.AC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|526641878:3-117              .UU.UGGCGGCC..AU.AGC.GAG.U.UGG.UC.CCAC.GCCU..U.C.CCAUCCCGAAC
+gi|389606634:c119374-119258     .UU.UGGCGGCC..AU.AGC.GAG.U.UGG.UC.CCAC.GCCU..U.C.CCAUCCCGAAC
+gi|507148557:1-109              .--.UGGCGGCC..AU.AGC.GAG.U.UGG.UC.CCAC.GCCU..U.C.CCAUCCCGAAC
+gi|662019915:1-113              .--.UGGCGGCC..AU.AGC.GAG.U.UGG.UC.CCAC.GCCU..U.C.CCAUCCCGAAC
+gi|507148579:1-112              .--.UGACGACA..AU.AGC.AAG.A.UGG.AA.CCAC.CUGA..U.C.CCUUCCCGAAC
+gb|CP007577.1|:3302973-3303092  .GC.UGGCGACC..AU.AGC.AAG.A.GUG.AA.CCAC.CUGA..U.C.CCUUCCCGAAC
+gi|452192503:1-116              .GC.UGGCGACA..AU.AGC.AAG.A.GUG.AA.CCAC.CUGA..U.C.CCUUCCCGAAC
+gb|M76577.1|GLURR5SA:3-120      .CC.UGGUGGCC..AU.UGC.GAG.G.GCC.CU.ACAC.CCGA..U.C.CCAUCCCGAAC
+gb|M76569.1|ABCRR5SA:3-119      .CC.UGGUGGCC..AU.GGC.GGG.A.GAG.AU.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|S39188.1|:2-119              .CC.UGGUGGCU..UU.AGC.GAA.G.CGA.UC.AGAC.CCGA..U.C.CCAUCCCGAAC
+gi|452192385:1-116              .CU.UGGUGAAC..AU.AGC.AAG.C.GUG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gb|M34761.1|MAGRRAC:1-117       .CU.UGGUGACC..AU.AGC.GAG.C.GUG.RA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991619:1-116              .CC.UGGCGGCC..AG.AGC.GAG.C.GGG.AA.CCAC.CCGA..U.C.CCAUCCCGACC
+gb|M34762.1|MLCRRAB:1-117       .YU.UGGUGACC..AU.AGC.GAG.C.GUG.AC.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|485099285:1-114              .--.UGGUGGUU..AU.GGC.GGG.G.UGG.CU.GCAC.CCGU..U.C.CCUUUCCGAAC
+gb|CP013949.1|:1046709-1046826  .CC.UGGUGGUU..CU.AGC.GAA.G.AGC.CU.CAAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991914:2-119              .CC.UGGUGGUC..AU.GGC.GGG.G.CGG.CC.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991913:2-119              .CC.UGGUGGUU..AU.GGC.GGG.G.UGG.CC.GCAC.CCGU..U.C.CCUUUCCGAAC
+gi|451991605:2-118              .CU.UGACGACC..AU.AGA.ACA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gb|DQ532441.1|:c9325-9209       .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991936:1-114              .--.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gb|ANOR01000024.1|:5607-5723    .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|4468164:2-115                .CC.UGAUGACC..AU.AGC.GAU.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|48257:4-119                  .CC.CCGUGCCC..AU.AGC.GGC.G.UGG.AA.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|224510780:2-119              .CC.CCGUGCCC..AU.AGC.GGC.G.UGG.AA.CCAC.CCGU..U.C.CCAUUCCGAAC
+gi|451991880:1-115              .UC.UGGUGGCC..AA.AGC.ACG.A.GCA.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|662019950:1-114              .--.UGGUGGCC..AA.AGC.ACG.A.GCG.AA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gb|CP009574.1|:c806523-806408   .AC.UGACGAUC..AU.AGC.AGU.U.UGG.CA.CCAC.CUGA..U.C.CCAUUCCGAAC
+gb|M33886.1|CYTRRAB:1-116       .UC.UGGUGGCG..AU.AGC.AGA.G.AGG.UC.ACAC.CCGU..U.C.CCAUGCCGAAC
+gi|357428060:1522-1640          .CC.UGGUGGUC..AU.GGC.GAG.G.UGUcAA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|356882082:c402625-402507     .CC.UGGUGGUC..AU.GGC.GAG.G.CUC.CCaACAC.CCGA..U.C.CCAUUCCGAAC
+gb|CP012406.1|:664991-665109    .CC.UGGUGGUC..AU.GGC.GAG.G.UGUcAA.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|451991726:1-113              .--.CGGUGGCC..AU.GCC.GGA.G.GGG.AU.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192559:1-115              .--.UGGUGGCC..UUcGGC.GGA.G.CGA.UC.AGAC.CCGA..U.C.CCAUCCCGAAC
+gb|M35166.1|PLLS5RRNAB:1-109    .UC.CGGUGACC..AU.AUG.GUU.G.UGG.AA.ACAC.CUGU..U.C.CCUUUCCGAAC
+gb|CP011270.1|:4958369-4958477  .CU.CGGUGACU..UU.AUC.UAG.A.GGG.UC.ACAC.UCGU..U.C.CCAUUCCGAAC
+gb|M35170.1|GEM5SRRNA:1-108     .UC.CGGUGACC..AU.ACC.CAA.A.CGG.AA.ACAC.CCGU..U.C.CCAUUCCGAAC
+gi|452192403:1-110              .GA.UGGUGGUU..AC.AGG.GCG.G.GUG.UU.-CAC.CUCU..U.C.CCAUUCCGAAC
+gi|452192413:1-112              .UU.AGGCGGCC..-C.GGC.GCA.G.GGG.AC.CCAC.CUCU..U.C.CCAUCCCGAAC
+gb|M34775.1|ANCRRAA:1-116       .CC.UGGUGGCC..AU.UGC.GAG.G.AGC.CC.CAAC.CCGA..U.C.CCAUCCCGAAC
+gb|M35569.1|LTTRR5S:3-117       .CC.UGACGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|452192547:1-114              .--.UGGUGAUU..AU.GGC.GGG.G.UGG.CU.GCAC.CCGA..U.C.CCAUUCCGAAC
+gi|40413:3-117                  .CC.UGGUGGCU..AU.GCC.GGG.G.GUU.AC.CCAC.CCGA..U.C.CCAUUCCGAAC
+gb|M35310.1|HESRRA:1-117        .UC.CGGUGGCA..AU.GUC.GGA.G.GGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gb|M35568.1|VITRR5SXX:1-115     .CC.UGAUGACC..AU.AGC.AAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991653:1-112              .--.-GGUGGUG..AU.AUC.GAG.A.AGG.UC.ACAC.CCGA..U.C.CCAUACCGAAC
+gi|861061:1-118                 .GC.UGGUGGCU..AU.GGC.GGA.A.GGG.CC.ACAC.CCGA..U.C.CCAUCCCGAAC
+gi|860904:1-116                 .-C.CGGUGGCA..AU.GUC.GGA.G.GGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|507148422:2-119              .UC.CGGUGGCU..AU.GUC.GGA.G.GGG.UC.ACAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991792:1-116              .-C.CGGUGGCU..AU.GUC.GGA.G.GGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|452192399:1-117              .UC.CGGUGGCU..AU.GUC.GGA.G.GGG.UC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|451991925:1-116              .CU.UGGUGACA..AU.AGC.AUU.G.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|47140:2-118                  .UC.UGGAAACC..AU.AGC.AUU.G.UGG.CC.CCAC.CUGA..U.C.CCAUCCCGAAC
+gi|451991802:1-112              .--.-GGUGGCU..AU.AGC.GCA.G.GGG.UC.ACAC.CUGU..U.C.CCAUCCCGAAC
+gi|451992042:1-115              .AC.UGGUGAUU..AG.AGC.GGA.G.GGG.AA.ACGC.CCGU..U.C.CCAUUCCGAAC
+gi|452192373:1-117              .UA.CGGCGGUC..AU.AGC.GAA.G.GGG.AA.ACGC.CCGG..U.C.CCAUUCCGAAC
+gi|451991686:3-118              .CC.UGGUGGCC..AU.UGC.GAG.G.AGC.CU.GAAC.CCGA..U.C.CCAUCCCGAAC
+gi|328801247:21-136             .CU.UGACGACC..AU.AGA.GCA.U.UGG.AA.CCAC.CUGA..U.C.CCAUCCCGAAC
+gb|KF901086.1|:6138-6252        .--.UGGUGGUU..UU.AGC.GGU.G.UGG.AC.CCAC.CCGU..U.C.CCAUCCCGAAC
+gi|688725010:c1243-1130         .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gb|AC167666.4|:1429-1542        .CC.UGAUGACC..AU.AGC.GAG.U.UGG.UA.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|690018164:461-574            .CC.UGAUGACC..AU.AGC.GAG.G.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|451991889:1-113              .CC.UGAUGACC..AU.AGC.AAG.U.UGG.UC.CCAC.UCCU..U.C.CCAUCCCGAAC
+gi|688799711:426-535            .--.UAGCGAUU..AU.AGC.AGG.G.GAG.GU.ACAC.CUGG..U.U.CCAUUCCGAAC
+gi|307683286:c91863-91747       .UC.UGGUGUCC..CA.GGC.GUA.G.AGG.AA.CCAC.ACCA..A.C.CCAUCCCGAAC
+gi|452192203:1-116              .--.-GGCGGCC..AC.AGC.GGC.G.GGG.AA.CCAC.CCGU..A.C.CCAUCCCGAAC
+gi|765338145:1-113              .UC.UGACGACC..AU.AGC.GUC.U.CGG.AA.CCAC.CCCU..U.C.CCAUCCCGAAC
+gb|CP006885.2|:13738-13857      .UU.AGGCGGCC..AC.AGC.GGU.G.GGG.UUgCCUC.CCGU..A.C.CCAUCCCGAAC
+gi|689936939:3579-3693          .--.CGGUGGCC..AU.AGU.GGA.A.GGG.AA.ACAC.CCGG..U.C.CCAUUCCGAAC
+gi|841942794:7818-7933          .CC.UGGCGGCC..GU.AGC.GCG.G.UGG.UC.CCAC.CUGA..C.C.CCAUGCCGAAC
+gi|156148669:c114797-114685     .--.UGGUGGUU..AU.GGC.GGG.G.CGG.CC.GCAC.CCGU..U.C.CCAUUCCGAAC
+gi|687058084:c326-216           .UC.AGGUGGUU..AU.UGC.GGC.G.GGG.UC.CCAC.CUCU..U.C.CCAUUCCGAAC
+gi|687836183:c2166-2052         .CC.UGGUGAAA..UU.AGC.GCU.G.UGG.AA.CCAC.CCGA..U.C.CCAUCCCGAAC
+gi|49258838:3-122               .NU.AGGCGGCC..AC.AGC.GGU.G.GGG.UUgCCUC.CCGU..A.C.CCAUCCCGAAC
+gi|20609:4653-4769              .CU.UGAUACUU..AU.AGC.GCA.G.UGG.AC.CCACaUCGA..U.C.-CAUCCCGAAC
+gi|451991654:1-118              .UA.AGGCGGCC..AU.AGC.GGU.G.GGG.UU.ACUC.CCGU..A.C.CCAUCCCGAAC
+gb|CP007060.1|:196416-196534    .UA.AGGCGGCC..AU.AGC.GGC.G.GGG.CC.ACUC.CCGU..A.C.CCAUCCCGAAC
+gi|37927900:1-119               .UU.AGGCGGCC..AC.AGC.GGU.G.GGG.UNgCCUC.CCGU..A.C.CCAUCCCGAAC
+gi|526641914:1-118              .UA.AGGCGGCC..AU.AGC.GGU.G.GGG.UC.ACUC.CCGU..A.C.CCAUCCCGAAC
+                                                                     *              *  ***  
+
+AB001721.1/2735-2851            ACGGAAGUUAA.G.CCUCUCAUCG..CUGAU.G.GUACUAUGUGG..uUCG.......CU
+gb|CP006694.1|:152734-152851    ACGGAAGUUAA.G.CCUCUCAUCG..CUGAU.G.GUACUGUGUGG..uUCG.......CU
+gi|526641887:1-118              ACGGAAGUCAA.G.CUUCUCAUCG..CCGAU.G.GUACUAUUGGG..uUCG.......CU
+gi|216762:421-538               ACGGAAGUCAA.G.CUUCUCAUCG..CCGAU.G.GUACUAUUGGG..uUCG.......CU
+gi|452192414:1-117              ACGGAAGUUAA.G.ACUUGCAUCG..CCAAU.G.GUACUCGGUUC..uUCG.......GA
+gi|216767:249-367               ACAGAAGUUAA.G.CCCCUCAUCG..CCGAU.G.GUACUGCAGAG..uUCG.......CU
+gi|507148580:1-114              ACGGAAGUCAA.G.CACUCUCACG..CCGAU.G.GUACUGCGGUU...--C.......GC
+gi|452192347:1-113              ACGGAAGUUAA.G.CACCCUCACG..CCGAU.G.GUACUACGGUU...---.......AG
+gi|451991762:1-111              ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gi|452192371:1-112              ACGGCAGUCAA.G.CACUCUCGCG..CCGAU.G.GUACUGCGU--...UU-.......-U
+gi|452192196:1-116              ACAGAAGUUAA.G.CCCUCUUACG..CCGAU.G.AUACUGCCGCU...CAA.......AG
+gi|452192221:1-115              ACGGCAGUUAA.G.CCUUUCAUCG..UCGAU.G.GUACUGUAAGG..gUAG.......CU
+gi|507148498:1-116              ACGGCAGUUAA.G.CCUUUCAUCG..UCGAU.G.GUACUGUAAGG..gUAG.......CU
+gi|507148564:1-107              ACAGAAGUUAA.G.CUCUUUUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|KU291355.1|:36-147           ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|CP002873.1|:2145056-2145173  ACGGCAGUUAA.G.CCUUUCAUCG..UCGAU.G.GUACUGUAAGG..gUAG.......CU
+gb|CP006647.2|:c434557-434446   ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gi|507148596:1-116              ACGGAAGUUAAcG.CCCCUCAGCG..CCGAU.G.GUACUGCAGUU...--C.......GC
+gi|451992005:1-111              ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|CP004267.1|:c439103-438992   ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|CP007564.1|:466414-466525    ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gi|452192501:1-108              ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gi|452192103:1-116              ACGGCAGUUAA.G.CCUUUCAUCG..UCGAU.G.GUACUGUAAGG..gUAG.......CU
+gi|451991616:1-110              ACGGAAGUCAA.G.CUCUCUUACG..CCGAU.G.AUACUGCU-GA...---.......UC
+gb|CP005745.1|:c431115-431004   ACAGAAGUUAA.G.CUCUUUUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|CP005829.1|:c428563-428452   ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|CP000049.1|:c435752-435641   ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gb|CP005851.1|:481735-481846    ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gi|526641892:1-111              ACAGAAGUUAA.G.CUCUUAUUCG..CUGAU.G.GUACUGCGAG-...---.......-U
+gi|4468110:2-116                AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gb|CP015136.1|:656498-656615    ACGGAAGUUAA.G.CCCUCCACCG..CCGAU.G.GUACUGCAGGC..gCAG.......GU
+gb|CP013099.1|:3650031-3650144  UCGGAAGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGUGGCA...-GA.......UG
+gb|CP013066.1|:1198376-1198490  ACAGCAGUUAA.G.CCCGCCAGCG..CCGAU.G.GUAGUAGUCCU...UAA.......GU
+gb|CP011214.1|:386649-386764    UCAGAAGUUAA.A.CGCCGUAGCG..CUGAC.G.AUAGUUACCGG..gCAA.......CU
+gi|38938:2-120                  CCGGAAGCUAA.G.ACCCACAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gb|CP009217.2|:1265876-1265989  UCGUAAGUGAA.A.CCCUGUUGCG..CUGAU.G.GUACUGCAUCU...-UA.......AG
+gb|CP012154.1|:245759-245875    UCGGAAGUGAA.A.CGCGCCAGCG..CCGAU.G.GUAGUGCGGCA...-AU.......AG
+gb|CP003801.1|:c1381757-1381640 UCGGUCGUGAA.G.GCCUCCAGCG..CCGAU.G.GUACUUAGUCU...-UA.......AG
+gi|662020025:1-116              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|CP011213.1|:c135211-135096   AGAGUAGUUAA.G.CACCAUAGUA..CCGAU.G.AUACUUGAUCC..gAAA.......GG
+gb|CP007706.1|:54289-54406      UCGGCCGUGAA.A.CGCUCCAGCG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gi|610510261:c2632714-2632599   UCGGCCGUUAA.A.CUCCUCAGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gb|KT962112.1|:5558-5674        ACGGCCGUGAA.A.CGCCCCAGCG..CCAAU.G.GUACUCCGUCU...-UA.......AG
+gi|743966687:c3299323-3299206   ACGGCCGUGAA.A.CAUUCCAGCG..CCGAU.G.GUACUAAGUCU...-CA.......AG
+gb|M59337.1|STMCRETO5S:2-119    CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|507148501:1-116              ACAGCAGUUAA.G.CUCUUCAUCG..CCGAU.G.GUACUCGGACC..gCAG.......GG
+gi|662019993:1-109              AGAGAAGUUAA.G.CCCGUCAGCG..CCGAU.G.GUACUGCGU--...-A-.......-A
+gi|662020001:2-112              AGAGUCGUUAA.G.CCCCGGAGCG..CCUAU.G.GUACUGCCUUC...---.......AC
+gi|374855595:178928-179047      ACGGCCGUUAA.G.CCCGCCCGCG..CCGAU.G.GUAGUGGGCUC..gUGA.......GG
+gi|662019999:2-119              UCGGCCGUGAA.A.AACCCCAGCG..CCCAU.G.AUACUGUGCCU...-CA.......AG
+gb|CP006911.1|:c1523003-1522887 UCAGAAGUGAA.A.CCACUUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|662019963:1-115              UCGGCCGUGAA.A.CGCCCCUGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gi|662019989:1-117              CCGGAAGCUAA.G.CCUGCCUGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gb|KC811143.1|:23595-23712      ACGGAAGUUAA.G.CCCAUUAGCG..CCGAU.G.GUACUUGGGGG..gCAA.......CC
+gb|CP012645.1|:c7075-6965       AGAGAAGUUAA.G.CCCCGCCGAG..CCGAU.G.GUACUGCGGUC...---.......AC
+gi|451991747:2-119              UCGGCCGUUAA.A.CUCUUCAGCG..CCAAU.G.GUACUAUGGCU...-UA.......AG
+gb|CP005990.1|:c1738617-1738502 UCGGAAGUGAA.A.CCGCGUAGCG..CCGAU.G.AUAGUGCCGCC..aCGC.......UG
+gi|485099290:1-116              AGGAAAGUUAA.G.GUCUAUUACG..CUGAU.G.GUACUGCAUGG..gAGA.......CU
+gi|662019941:c114-4             UCGGAAGUGAA.A.CCGCUUAGCG..CCGAU.G.AUAGUGUGGCA...-GU.......AG
+gi|452192398:1-115              ACGGUCGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUGGGGCG..uUAC.......CG
+gb|CP011770.1|:130936-131052    UCGGACGUGAA.A.CCAAACAGCG..CCGAU.G.GUACUAACGCU...-UA.......AG
+gi|485099250:2-115              ACGGCCGUGAA.A.CGCUCCAGCG..CCUAU.G.GUACUUCGUCU...-UA.......AG
+gb|CP006745.1|:122093-122210    UCGGCCGUGAA.A.ACUUUCAGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gi|662019982:1-114              UCGGCCGUGAA.A.ACUUUCAGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gb|CP006567.1|:9138975-9139093  CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|507148531:1-114              CCAGUCGUUAA.G.CACCGUUGCG..CUGAU.G.GUACUGCGUCU...-UA.......AG
+gb|JQ733906.1|:5882-5999        CCGGCAGUUAA.G.CCCACCAGCG..CCGAU.G.GUAGUAUGCGG..gCGA.......CU
+gb|CP003347.1|:1410592-1410706  CCGGAAGCUAA.G.CCUGUCAGCG..CCGAU.G.AUACUGCCCAU...---.......AC
+gi|452192107:1-117              ACGGAAGUUAA.G.CCUCUCAGGG..CCGAU.G.GUACUGCACGG..gUAG.......CU
+gi|662020015:2-117              AGGACCGUGAA.A.CGACCUAGCG..CCGAU.G.AUAGUAUGGAU...--U.......GC
+gi|39130:3-120                  ACGGCCGUGAA.A.CGCCCCAGCG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gi|451991572:2-119              ACGGCCGUGAA.A.CGCCCCAGCG..CCAAU.G.GUACUCCGUCU...-CA.......AG
+gi|258590833:c1582130-1582011   ACGGAAGUGAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCGUGG..gCAA.......CU
+gi|452192338:1-117              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|507148517:1-115              UCAGAAGUGAA.A.CCUCUUAGCG..CUGAU.G.GUAGUGUGGGG...-UU.......UC
+gi|452192484:1-114              AGAGAAGUUAA.G.CCCGUAAACG..CCGAU.G.GUACUGCACUG..gCAA.......CG
+gi|451991869:1-115              UCGGAAGUUAA.G.CCCCUUAGCG..CCGAU.G.AUACUGCGUCU...-UA.......AG
+gb|CP003308.1|:286401-286517    UCGAAUGUGAA.A.CCUCAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|662020024:1-117              CCGGAAGCUAA.G.CCCACCAGCG..CCGAU.G.GUACUGCACCC..gCGA.......GG
+gi|452192100:1-114              UCGGAAGUGAA.A.CUGCUCAGCG..CCGAU.G.AUAGUGUGGGG...CUU.......CC
+gi|452192227:1-113              UCAGAAGUGAA.A.CAGACCAGCG..CCGAU.G.GUAGUGUGGCG...-UU.......GC
+gi|452192370:1-117              CCGGAAGCUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|452192339:1-117              ACGGAAGUUAA.G.CCUCGUUGGG..CCGAU.G.GUACUGCACGC..gUAA.......GU
+gi|452192326:1-113              ACGGAAGUUAA.G.CUCUGUUCCG..CCUAC.G.AUACUUGGGCU...-UA.......AG
+gb|GU474916.1|:6228-6347        UCGGAAGUUAA.G.CCCUAUUGCG..CCGAU.G.GUACUGCGCGG..gUAA......cUA
+gi|38747:1-116                  UCAGAAGUGAA.A.CCUCUUCGCG..CUGAU.G.GUAGUGNGGGU...--U.......AC
+gb|CP003639.1|:c3378511-3378397 ACGGAAGUUAA.G.ACCUCCAGGG..CCGAG.C.AUACUUGGGGC...AUA.......GC
+gi|485099292:1-111              CCGGUAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCAUGG...-UA.......GC
+gi|452192337:1-117              ACGGAAGUUAA.G.UCUCGCUGGG..CCGAU.G.GUACUGCACGG..gUGA.......CU
+gi|452192239:1-115              ACGGCAGUUAA.G.CCUCUCAGCG..CCGAU.G.GUACUUGGCGG..gGGA.......CC
+gi|330752658:19019-19129        AGAGAAGUUAA.G.CCCGUCCGCG..CCGAU.G.GUACUGCCGUA...---.......AU
+gi|452192169:2-119              UCGGCCGUGAA.A.GCCUGUAGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gi|452192109:1-111              AGGACAGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gb|CP009848.1|:137372-137488    UCAGAAGUGAA.A.CGAAAUAGCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|452192272:1-117              ACGGAAGUUAA.G.CCUCGCAACG..CCGAU.G.AUACUGUGCUG..gAGA.......CG
+gi|451991708:2-119              ACGGAAGUUAA.G.CCCUUCAGGG..CCGAU.G.GUACUGCACCG..gCGA.......CG
+gi|451991840:1-117              ACGGAAGUUAA.G.CCACGCUGGG..CCGAU.U.GUACUGCACGC..gAAA.......GU
+gb|CP010552.1|:c648422-648306   UCAGAAGUGAA.A.CCACUUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|EU081774.1|:5115-5231        ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUCGGGGG...UUU.......CC
+gb|CP003667.1|:1525308-1525419  AGAGAAGUUAA.G.CCCACUUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|452192132:1-116              CCGGCCGUUAA.G.CCACUUCGGG..CCGAU.G.GUAGUGCGGGG..gCAG.......CC
+gi|662019923:1-112              UCAGAAGUGAA.A.CGAACGUGCG..CCGAU.G.AUAGUGUGGAU...--U.......AC
+gi|452192391:2-120              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACAC..gCGA.......GA
+gi|757807349:c1774843-1774728   CCGGAAGCUAA.G.GCCUAGCACG..GCGAU.G.GUACUGCACUC..gAGA.......GG
+gi|507148552:1-110              AGAGAAGUGAA.A.CACAUUAGCG..CUGAU.G.GUACUGGU---...UAU.......--
+gi|452192288:1-115              UCGGCCGUGAA.A.CGCUCCAGCG..CUGAU.G.GUACUUCGUCU...-CA.......AG
+gb|CP003418.1|:799889-800004    AGAGAAGUUAA.G.CCCCGGAACG..CCGAU.G.GUACUGCCUGC..gCAG.......GU
+gb|CP012075.1|:1345279-1345392  AGAGAAGUUAA.G.CCCGCCUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|451991950:1-115              ACGGAAGUUAA.G.CUCUCUAGCG..CCGAU.G.GUAGUUGGGGC...CUU.......GC
+gb|M34776.1|PSERRAA:1-117       UCGGCCGUUAA.A.CUCCUCAGUG..CCGAU.G.GUACUAUGUCU...-UA.......AG
+gb|M34771.1|MTBRRAB:1-117       UCGGCCGUUAA.A.CACACCAGCG..CCGAU.G.GUACUGUGUCU...-CA.......AG
+gb|CP000655.1|:41847-41961      AGGACAGUGAA.A.CGAUUCUACG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gi|330752781:c15609-15499       AGAGAAGUUAA.G.CCCGCCAGCG..CCGAU.G.GUACUGCA---...---c....u.--
+gi|42763:130-247                UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991719:1-113              AGGACCGUGAA.A.CGCCUUAGCG..CCGAU.G.AUAGUGCGGCC...--U.......UG
+gi|452192242:1-115              CCGGUCGUUAA.G.UCUCUUUGCG..CUGAU.G.GUACUGCCCUG...UGG.......UG
+gi|451991725:1-107              ACGGCCGUUAA.G.CCCAGC-ACG..CCGAU.G.AUACUGCA---...---a....c.--
+gb|CP007490.1|:520317-520434    CCAGAAGCUAA.G.ACCUCCUGCG..CCGAU.G.GUACUGCAAGG..gUGA.......CC
+gi|452192089:1-113              ACGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUACCCUG..gCGA.......CG
+gi|48430:2-118                  UCAGAAGUGAA.A.CGUAAUAGCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|212548595:c196594-196482     AGAGAAGUUAA.G.CCCGAUUGUG..CUGAU.G.GUACUGCGA--...---.......--
+gi|452192382:1-113              ACAUAGGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUAGGCAA...---.......AU
+gi|451991901:1-112              ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUCGGGGG...UUU.......CC
+gi|330752731:13671-13782        AGAGAAGUUAA.G.CCCGUUUGCG..CCGAU.G.GUACUGCA---...---u...cu.--
+gi|507148619:1-115              UCGGCCGUGAA.A.ACCCCCAGCG..CCUAU.G.AUACUGUGGCU...-UA.......AG
+gi|452192257:1-111              UCGGAAGUGAA.A.CUGCUCAGCG..CCGAU.G.AUAGUGUGGGA...-UU.......AC
+gi|451991980:1-114              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGGGGCC...--U.......GC
+gi|451991975:1-115              ACAGUAGUUAA.G.CCCUUCAGCG..CUGAU.G.GUACUUGGCGG..gAAG.......CU
+gb|CP002514.1|:107806-107924    ACGGAAGUUAA.G.CUCCGUGGAG..UCGAU.G.AUACUGCGCGG..gGGA.......CU
+gi|452192342:1-116              ACGGAAGUUAA.G.CUCCGUGGAG..UCGAU.G.AUACUGCGCGG..gGGA.......CU
+gi|507148613:1-117              ACAGCAGUUAA.G.CUUGUCUGCG..CCGAU.G.GUACUGCACGG..gCAA.......CU
+gi|507148504:1-113              UCAGCAGUUAA.G.CUCUCUUGCG..GCGAU.G.GUAUUGCACGC..gUGA.......GC
+gi|452192256:1-117              ACGGAAGUUAA.G.CUCUACAGCG..CCGAU.G.GUACUGCAAGG..uUUC.......CU
+gi|507148584:1-115              ACGGCCGUGAA.A.CGCCCCAGCG..CCGAU.G.GUACUUCGUCU...-CA.......AG
+gi|972621738:1141564-1141681    ACGGUCGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUGGGCGG..uUAC.......CC
+gi|452192217:1-116              ACGGAAGUUAA.G.CCCCUCAGCG..CCGAU.G.GUACUGCCAGG..gAAA.......CU
+gi|166157033:35720-35832        AGAGAAGUUAA.A.ACCACUAGCG..CCGAA.A.AUACUUGAAGA...--A.......AU
+gi|662019965:1-110              AGAGAAGUUAA.G.ACUACCAGCG..CCGAA.A.AUACUGAACAG...--A.......AA
+gb|CP010904.1|:590328-590444    ACGGAAGUUAA.G.CUCCCCAGCG..GCGAU.G.GUACUGAGGAA...-CA.......GA
+gi|452192430:1-115              ACGGAAGUGAA.A.CGCAGCUGCG..CCGAU.G.GUAGUGUGGCU...-UA.......AG
+gb|CP006375.1|:c1605-1492       UCGGCCGUGAA.A.CGCCUCAGCG..CCCAU.G.AUACUUCGUCU...-UA.......AG
+gi|507148481:2-116              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gi|965596756:c1423416-1423301   ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.AUACUGCCACC..gCGA.......GG
+gb|GU568020.1|:c16851-16734     ACGGCCGUUAA.G.UCUCACCGCG..CGGAU.G.GUACUGCCGGG..gUCG.......CC
+gi|452192515:1-109              AGAGUAGUUAA.G.CCCGUUAGCG..CAGAU.G.GUACUGCUGU-...---.......-A
+gi|674649611:c46346-46231       ACGGCAGUUAA.G.CUCUUUAGCG..UCGAU.G.GUAGUUGGGGU...-UA.......GC
+gi|662019976:1-109              AGAGAAGUUAA.G.CCCCGUCACG..CCGAU.G.GUACUGCG---...-CA.......--
+gi|452192233:1-115              ACGCUCGUCAA.G.CUCACAAGCG..CCAAU.G.GUAGUGCCGCC..cCGC.......UG
+gi|662019912:1-116              UCAGCAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gi|485099214:1-112              AGAGAAGUUAA.G.CCCUGUCGCG..CCGAU.G.GUACUGGGGUU...---.......AC
+gi|485099267:1-114              UCGGCCGUGAA.A.CGUUCCAGCG..CUGAU.G.GUACUUUGCCU...-UA.......AG
+gi|451991879:1-116              UCAGAAGUGAA.A.CCACUUAGCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|91199943:841289-841402       ACGGUAGUUAA.G.CUUCUU-ACG..CUGAU.G.GUACUGGUG--...-A-.......-A
+gi|452192246:1-117              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CU
+gi|485099234:1-115              ACGACCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGACC..gAAG.......GG
+gi|452192344:1-109              AGAGCAGUUAA.G.CUUCGCAUCG..CCGAU.G.GUACUGCG---...-CA.......--
+gi|451992014:1-117              ACAGUAGUUAA.G.UCCUCCAGCG..CCUAU.G.GUACUGGGAGC..gUGA.......GC
+gi|295083795:983988-984097      AGAGAAGUUAA.G.CCUUGUAGCG..CCGAU.G.GUACUGCG---...UAA.......--
+gi|662019926:1-114              ACGGCAGUUAA.G.CUCUCCAGCG..CCGAU.G.GUACUGCGGUU...--A.......AG
+gi|452192269:1-114              AGGACAGUGAA.A.CGACUCCGCG..CCAAU.G.AUAGUGUGGAU...--U.......AC
+gi|485099271:1-111              AGAGAAGUUAA.A.CACGUUAGCG..CUGAU.G.GUACUGGU---...UAU.......--
+gi|452192113:3-116              AGAGAAGUUAA.A.CACGUUAGCG..CUGAU.G.GUACUGGU---...UAU.......--
+gi|451991849:3-118              UCGGACGUGAA.A.UGCCCCAGCG..CCCAU.G.GUACUGCAUCU...-CA.......AG
+gi|451991897:1-113              AGGACAGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCGGCU...---.......CC
+gi|451991755:1-116              UCAGAAGUCAA.G.CCUUUCAUCG..CCGAU.G.GUACUGCACAC...-AA.......GA
+gi|662019919:2-120              AGAGCAGUUAA.G.CCCCUCAGCG..CCGAU.G.GUACUUGGCCC..gCAA.......GG
+gi|452192313:1-118              CCGGAAGCUAA.G.ACCCACAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gb|CP012669.1|:c2071292-2071176 UCGGCCGUGAA.A.CCGGACAGCG..CCGAU.G.GUACUAGUGCC...-UA.......AG
+gi|662019985:3-116              AGGACAGUGAA.A.CGCCUUCGCG..CCGAU.G.AUAGUGGGUGG...---.......AC
+gi|451991908:1-116              UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991887:1-116              UCAGCAGUGAA.A.CGCAAUUGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192446:1-110              AGAGAAGUUAA.G.CCCCUCAUGG..CCGAU.G.GUACUACACAA...---.......CA
+gi|451991931:1-116              ACGGAAGUUAA.G.CCUCUCAGGG..CCGAU.G.GUACUGCACGG..gUAG.......CU
+gi|451991866:1-117              UCGGUAGUGAA.A.CUGCUCAGCG..CCAAU.G.AUAGUGCGGCC..uCGC.......UG
+gb|CP003538.1|:465652-465769    UGGACCGUGAA.A.AGCCUCAGCG..CCAAU.G.GUACUUCGUCU...-UA.......AG
+gb|CP009556.1|:c2977167-2977053 AGGACCGUGAA.A.CGACUCUACG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gi|507148567:1-110              AGAGAAGUGAA.A.CACAUUAGCG..CUGAU.G.GUACUAGUU--...---.......AA
+gb|CP000108.1|:107551-107659    AGAGUCGUUAA.G.CCCUGAUGAG..CCGAU.G.GUACUGCUU--...---.......AA
+gi|974573954:1154616-1154733    CCGGAAGCUAA.G.ACCUUCUGCG..CCGAU.G.GUACUGCGAGG..gGGA.......CC
+gi|612149278:100728-100841      AGAGAAGUUAA.A.CUUGUUAGCG..CCGAU.G.GUACUAGUA--...---.....a.--
+gb|CP010105.1|:54410-54523      AGAGAAGUUAA.A.UUUGUUAGCG..CCGAU.G.GUACUAGUA--...---.....a.--
+gi|452192431:1-116              CCGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCGAUG...GGU.......AA
+gi|451991871:1-117              ACGGUAGUUAA.G.CUCCUCAGCC..CCAAU.G.GUACUGCACGC..gCAA.......GU
+gi|507148548:1-112              AGAGAAGUUAA.G.CUCACUUACG..CCGAU.G.GUACUGCGGUU...--U.......UC
+gi|485099263:1-105              AGAGAAGUUAA.G.CCCAUUUGCG..CAGAU.G.GUACUGCUA--...---.....u.--
+gi|452192343:1-108              AGAGAAGUUAA.G.CCCGUCAGCG..CCGAU.G.GUACUGCA---...---c....u.--
+gi|507148434:3-120              ACGGAAGUUAA.G.CUCUUUUGCG..CCGAU.G.GUACUGCUCGG..gCGA.......CC
+gi|451992023:1-116              ACGGAAGUUAA.G.CCCCUCUGGG..CCGAU.G.AUACUGCACGG..gUAG.......CU
+gi|507148443:2-118              UCAGCAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|452192415:1-110              AGAGAAGUUAA.G.CCCCGCACCG..CCGAU.G.GUACUAAUGUC...---.......AA
+gi|452192456:1-115              CCGGAAGCUAA.G.CCUCACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|662019946:3-116              ACGGCCGUUAA.A.UGCCCCAGCG..CCUAU.G.GUACUUCAUCU...-UA.......AG
+gi|507148456:1-116              CCGGCAGUUAA.G.CCCACCAGCG..CCCAU.G.AUACUGAUCGG..gAGA.......CC
+gi|507148467:1-115              CCGGCAGUUAA.G.CUCCCCUGCG..CCUAU.G.AUACUGGCCGG..gAGA.......CC
+gi|452192152:1-115              CCGGAAGCUAA.G.CCCGCCAGCG..CCGAU.G.GUACUGCCAGG..gGGA.......CC
+gb|JN173082.1|:1612-1730        ACGAUGGUUAA.G.ACCUUGUCGG..CCGAU.G.AUACUAUGCUG..gAGA.......CG
+gb|GU474895.1|:11785-11903      UCGGCCGUGAA.A.ACCCUCCGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gb|GU474886.1|:c24601-24485     CCGGCCGUUAA.G.UGCCGUCGCG..CCAAU.G.GUACUGCGUCU...-CA.......AG
+gb|GU474885.1|:c28506-28393     UCAGAAGUGAA.A.CCGCUUAGCG..CCGAU.G.AUAGUGUGGGA...-GG.......UC
+gi|452192265:1-115              ACACAGGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGGGGGA...-GG.......UC
+gi|452192396:1-108              AGAGAAGUUAA.G.CCUAUUAGCG..CCGAU.G.GUACUACA---...-UU.......--
+gi|452192306:1-111              AGAGAAGUUAA.G.CCCGGUCACG..CCGAU.G.GUACUGCG---...UAA.......--
+gi|507148610:1-117              ACGGUAGUUAA.G.CUUCUCAGUG..CCGAU.G.AUACUUGGAUG..gAGA.......CG
+gi|452192220:1-115              CCGGAAGCUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCAUGC..gGGA.......GC
+gi|451991946:2-116              UCGGUCGUUAA.G.CCUCUCAGGG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gi|507148520:1-115              ACAGAAGUUAA.G.CUCUUUAGCG..CCGAU.G.GUAGUCGGACU...-UA.......CG
+gi|452192350:1-110              AGAGAAGUUAA.G.CCCCUGAGUG..CCGAU.G.GUACUGCCUU-...---.......-A
+gi|451992029:1-107              AGAGAAGUUAA.G.CCCAACAGCG..CCGAU.G.GUACUGCC---...-CA.......AA
+gi|451991997:1-114              UCAGAAGUGAA.A.CACAGUAUCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991967:1-116              UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192535:1-112              UCGGAAGUGAA.A.CCGCUUAGCG..CCGAU.G.AUAGUGUGGCA...GUU.......UG
+gi|47202:1-118                  ACGGUCGUUAA.G.CUCUUCUGUG..CCGAU.G.GUAAUUGGGGG..cUGU.......CC
+gi|452192331:1-114              CCGGAAGUUAA.G.CCUCUCAGCG..CCGAU.G.AUACUGCAGAC...UAC.......GU
+gb|M35164.1|PLL5SRRNA:1-108     ACAGCCGUCAA.G.CUUUUC-GAG..CCGAU.G.AUAGUACC---...---a...ca.--
+gi|451991662:2-107              UCGGAAGUGAA.A.CUUUUUAGCG..CCGAU.G.AUACUUA----...---a....a.--
+gi|452192154:1-114              UCAGAAGUGAA.A.CGACUCAUCG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gi|507148534:1-112              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gi|452192440:1-114              UCGGAAGUGAA.A.CGCCCCUGCG..CCAAU.G.GUACUUCGUCU...-UA.......AG
+gi|452192401:1-116              CCGGAAGCUAA.G.CCUAUCCGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|452192545:1-116              CCGGAAGCUAA.G.GCCCACUGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|451991953:2-118              UCGGCCGUUAA.A.UUCCUCAGCG..CCAAU.G.GUACUAUGUCU...-UA.......AG
+gi|452192443:1-110              AGAGCAGUUAA.G.CCCACCAGCG..CAGAU.G.GUACUGGAGUA...---.......AU
+gi|507148542:1-113              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gi|452192309:1-115              ACAGAAGUUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGAGCGG..gAAA.......CC
+gi|452192267:1-111              AGGGAAGUUAA.G.CCCGUCUGCG..CCGAU.G.GUACUGCCACA...C--.......-C
+gi|404432500:c268700-268590     AGAGCAGUUAA.G.CCCAGCAGCG..CCGAU.G.GUACUUCGGUA...---.......AU
+gi|451991784:1-113              AGGUCCGUGAA.A.CAGCUCCGCG..CCGAU.G.AUAGUGCGGAU...---.......AC
+gi|662019913:1-111              AGAGAAGUUAA.G.CCCUGCCGCG..CCGAU.G.GUACUGGGGUU...---.......AC
+gi|330752281:16273-16380        AGAGAAGUUAA.G.CCCUACAGCG..CCGAU.G.GUACUGCA---...-UU.......--
+gi|452192206:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192362:1-117              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gCCA.......GG
+gi|451992018:1-116              CCGGAAGUGAA.A.CGCUGCCGCG..CCAAU.G.GUAGUCGGACG...ACA.......GG
+gi|452192264:1-114              UCAGAAGUGAA.G.AGCUCCAUCG..CCGAU.G.GUACUGUGUCU...-UA.......AG
+gi|485099235:1-115              ACGGAAGUUAA.G.ACCUCCAGGG..CUGAU.G.AUACUUGGACC..gCAG.......GG
+gi|507148546:1-112              AGAGAAGUUAA.G.CCCUGCAGCG..CCGAU.G.GUACUGGGGUU...---.......AC
+gi|662019994:1-113              UCGGAAGUGAA.A.CGCAGCCGCG..CCGAU.G.GUAGUGUGAAU...---.......CC
+gi|452192327:1-115              ACGGAAGUUAA.G.CCCGCCAGCG..CCGAU.G.AUACUGCCCGC..gGGA.......GC
+gi|452192411:1-115              UCGAACGUGAA.A.CCUCAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|485099273:1-118              CCGGAAGCUAA.G.CCUGCCCGCG..CUGAU.G.GUACUGCACCC..gGGA.......GG
+gi|451992036:1-112              ACGGAAGUUAA.G.CCUCUCUGGG..CCGAU.G.GUACUGCACUG..gUAA.......CG
+gi|452192096:1-116              ACAGAAGUUAA.G.CUCCUCCGCG..CCGAU.G.GUACUGCAAGG..gCAG.......CU
+gi|944192093:142971-143088      UCGGCCGUGAA.A.CGCACCAGCG..CCCAU.G.AUACUUCGUCU...-CA.......AG
+gb|CP005078.1|:437054-437159    ACAGAAGUUAA.G.CACUAUUACG..CCGAC.G.AUAGCC-----...---gc..aa.--
+gi|526641908:1-103              ACAGAAGUUAA.G.CACUAUUACG..CCGAC.G.AUAGCC-----...---gc..aa.--
+gi|451991589:2-119              CCGGAAGCUAA.G.GCCUGGCACG..GCGAU.G.GUACUGCACCC..gACA.......GG
+gi|451991896:1-113              AGGACAGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gi|507148581:1-114              AGAGAAGUUAA.G.CUCACUUACG..CCGAU.G.GUACUGCGGUU...--U.......UC
+gi|451992020:1-114              CCGGCAGUUAA.G.CCCACCAGCG..CCCAU.G.AUACUGGCCGG..gAGA.......CC
+gi|223587978:c1375487-1375371   UCAGAAGUGAA.A.CACAAUAGCG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gi|344169122:985-1098           AGGACCGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gi|451991939:1-113              ACAGAAGUUAA.G.CCCUUCAGCG..CUGAU.G.GUACUUGGCGG..gCAG.......CU
+gi|507148553:1-110              ACGGUAGUUAA.G.CUUCUCUGCG..CCAAU.G.GUAGUUGGGGG...CUU.......CC
+gi|452192277:1-112              CCAGAAGCUAA.G.CCUCUCAUCG..CUGAU.A.AUACUGCACCU...UUC.......AG
+gi|485099288:1-116              UCAGCAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|452192092:1-114              UCGGCCGUCAA.A.CGCUUCAGCG..CCAAU.G.GUACUAUGUCU...-CA.......AG
+gi|452192340:1-118              UCGGAAGUCAA.G.CUCUUCAGCG..CCGAU.G.GUACUUUGCCU...-UA.......AG
+gi|451991696:3-121              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAG.A.AUACUGCGGGAa.gGUA.......AC
+gi|662019943:1-117              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|451991868:2-117              UCAGAAGUGAA.A.CGCGGUAGCG..CCGAU.G.GUAGUGUGGCA...-UU.......CG
+gi|451991823:1-113              AGGACAGUGAA.A.CGCUUCUGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gi|451991830:1-114              UCAGAAGUGAA.A.CACAGUAUCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192348:1-114              AGAGAAGUUAA.G.CCCGUUAGCG..CUGAU.G.GUACUGCCCUU...-UU.......GA
+gb|CP001854.1|:c3761242-3761125 AGAGCCGUUAA.G.CCUCUCAGCG..CCGAU.G.GUACUUGGCCC..gCAA.......GG
+gi|485099217:1-110              UCGGAAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCUAGG...-UA.......GC
+gi|452192310:1-115              ACGGAAGUGAA.A.CACGCCAGCG..CCGAU.G.AUACUUGGACC..gCAG.......GG
+gb|CP003989.2|:c3556699-3556583 UCGGAAGUGAA.A.CUGUUCAGCG..CCGAU.G.GUAGUUUGGGG...CCU.......CC
+gi|452192367:1-117              ACGGUCGUGAA.A.CGCGCCUGCG..CCGAU.G.GUACUUGGACC..gGAG.......GG
+gi|452192190:1-116              CCGGAAGCUCA.G.CCCUACAGCG..CCGAU.G.GUACUGCCCUG..gAGA.......CG
+gi|452192301:1-109              AGAGAAGUUAA.G.CCUGUCCACG..UCGAU.G.GUACUGCU--G...---.......CA
+gi|452192470:2-119              ACGGAAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUCCGCGG..gAAA.......CC
+gi|451991742:1-116              ACAGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUUGGGGC...UUU.......GC
+gb|GU474939.1|:c103790-103680   AGAGAAGUUAA.G.CACAUUAGCG..CCGAU.G.GUACUGGG---...-UU.......--
+gi|452192162:1-116              CUGGAAGUUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCGAUC..gGGA.......GA
+gi|452192325:1-113              CCGGUAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCAUGG...-UA.......GC
+gi|451991979:1-117              ACGGAAGUUAA.G.CUCUUUAGCG..CCGAU.G.GUACUGCUCGG..gAAG.......CU
+gi|485099291:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192330:1-113              AGGACAGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gb|CP013862.1|:c2508425-2508307 ACAGCAGUUAA.G.CUCUCCAGCG..CCGAU.G.GUAGUUGGGGU...UUA.......AC
+gi|451991679:2-121              ACGGUCGUCAA.G.CCUGAUAGCG..CCGAU.G.GUACUCCGGGC..gAGA.......GC
+gi|452192376:1-117              ACGGUCGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUGCUGGG..uUAC.......CC
+gb|CP003240.1|:83241-83356      UCGGCCGUGAA.A.CCGUCCUGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gb|GQ228684.1|:92-207           ACGGCCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGCUCC..gCAG.......GG
+gi|451991973:2-119              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|451991920:1-115              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|451992037:1-118              CCGGCAGUUAA.G.CCCUUCUGCG..CCGAU.G.AUACUGUGCUGggcAAA.......CG
+gi|451992044:1-112              AGGACCGUGAA.A.CCACUUAGCG..CCGAU.G.AUAGUACGGAU...---.......AC
+gi|485099260:3-121              UCGGAAGUUAA.G.CCCAUCAGGG..CCGAU.G.GUACUUGGACC..gCAG.......GG
+gb|CP009452.1|:158690-158806    UCGGCCGUGAA.A.CCUGACAGCG..CCGAU.G.GUACUAUGGCU...-CA.......AG
+gi|451991718:4-120              UCGGCCGUGAA.A.CCUGACUGCG..CCGAU.G.GUACUAUCGCU...-CA.......AG
+gi|319409085:c134159-134041     UCGGCCGUGAA.A.CGUUCCAGCG..CUGAU.G.GUACUGUGUCU...-UA.......AG
+gi|452192406:1-117              ACAGAAGUUAA.G.CUCAGUCACG..CCGAA.A.GUAGUUGGAGG..aUCG.......CC
+gi|452192519:1-115              AGGUCCGUGAA.A.CGACUCCGCG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gi|507148418:1-113              AGAGAAGUUAA.A.CACAUUAGCG..CUGAU.G.GUACUGGU---...UUU.......--
+gi|452192126:4-120              CCGGAAGCUAA.G.CCUGCCUGCG..CCGAU.G.GUACUGCACCU..gGGA.......GG
+gi|451991819:1-117              ACGGUAGUUAA.G.CCCACCAGAG..CCGAU.G.GUACUGCACCG..gAAG.......CG
+gi|451992038:1-116              ACGGUAGUUAA.G.CCCACCAGAG..CCGAU.G.GUACUGCACCG..gAAG.......CG
+gi|485099287:1-113              ACAGAAGUUAA.G.CUCUCCAGUG..CCGAU.G.AUACUUGGGUG..gAAA.......CG
+gi|451991932:1-114              UCGGCCGUGAA.A.CCAGACUGCG..CCGAU.G.GUACUAGCGCU...-UA.......AG
+gi|662019987:1-119              CCGGAAGCUAA.G.CCUGCCCGCG..CUGAU.G.GUACUGCACCC..gGGA.......GG
+gi|452192432:1-117              ACGACCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGACC..gCAG.......GG
+gi|662020012:1-117              CCGGCCGUUAA.G.UGCUACUGCG..CCAAU.G.GUACUGCGUCU...-CA.......AG
+gi|452192386:2-113              AGGACCGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCUGCA...---.......AC
+gi|451991806:2-113              UCAGAAGUGAA.A.CAGUCCAGCG..CCGAU.G.GUAGUGUGGAU...---.......UC
+gi|38851:2-119                  CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCCCUG..aAGA.......CG
+gi|451991566:2-115              UCGGUCGUUAA.G.UCCCCCUGGG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gi|662019932:1-113              CUAGAAGUUAA.G.CCCAUAUACG..CUGAU.G.GUACUUGGCUG..gAAG.......CG
+gi|451991999:2-118              UCAGAAGUGAA.A.CGACUUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|507148438:3-120              CCGGAAGCUAA.G.CCUGGUUACG..CUGAU.G.GUACUGCACUC..gGGA.......GG
+gb|CP009794.1|:c305500-305387   AGGACCGUGAA.A.CGACUCUACG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gb|JX556289.1|:c400-283         ACGGCCGUGAA.A.UGCCCCAGCG..CCGAU.G.GUACUUUGUCU...-UA.......AG
+gb|M11544.1|TFERRATNO:3-118     UCGGCCGUUAA.A.CUCCUCAGCG..CCGAU.G.GUACUAUGUCU...-UA.......AG
+gi|452192351:1-110              AGAGCAGUUAA.G.CCCGCCAGAG..CCGAU.G.GUACUGCAGUA...---.......AC
+gb|M76578.1|ABCRR5SI:3-118      UCGGCCGUGAA.A.ACCCCCAGCG..CCUAU.G.AUACUGCGGCU...-UA.......AG
+gi|452192308:1-114              CCGGAAGCUAA.G.ACCCUCAUCG..CUCAU.A.AUACUGCAUCU...UUC.......AG
+gi|451992016:1-112              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gi|451991673:1-115              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUAGUCGGACU...-UA.......CG
+gi|451991646:1-115              ACAGUAGUUAA.G.CUCUUUAGCG..CCGAU.G.GUAGUCGGACU...-UA.......CG
+gi|452192389:1-116              UCAGAAGUGAA.A.CGUUCCAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192441:1-114              AGGACCGUGAA.A.CAGAGUUGCG..CCGAU.G.AUAGUGCAUAC...--U.......UC
+gb|CP000159.1|:c3324875-3324762 AGAGAAGUUAA.G.UCCCGCAGCG..CCGAU.G.GUACUGGCCG-...-U-.......-U
+gb|CP003546.1|:c900696-900580   UCAGAAGUGAA.A.CGCUGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192316:1-113              ACAGAAGUUAA.G.CCUUUCAUCG..CUGAU.G.AUACUUGGGGU..gCAG.......AC
+gi|1045039:2-119                CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gUAG.......GG
+gi|452192394:1-117              CCGGAAGCUCA.G.CCCUUCAGCG..CCGAU.G.GUACUGCCCCC..gCCA.......GG
+gi|507148500:1-115              CCGGAAGCUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCCCUG..gAGA.......CG
+gi|452192090:2-119              UCAGAAGUGAA.A.CGCCGUUGCG..CCGAG.G.GUAGUGUGGGG...UUU.......CC
+gi|662019968:1-116              UCAGUAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|452192213:1-116              CCGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.AUACUGUGCCGggcGAA.......CG
+gi|451991625:2-118              UCAGAAGUGAA.A.CACACCAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192536:1-118              CCGGAAGCUAA.G.GCCACCUGCG..CCGAU.G.GUACUGCACUC..gACA.......GG
+gi|512125287:1-116              ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUCGGGGG...UUU.......CC
+gi|452192261:1-115              CCAGAAGUUAA.G.CCCCCGAGCG..CCGAU.G.GUACUGCGGAG...UCA.......GU
+gi|662019957:1-115              CCGGAAGUUAA.G.CACUGUCGCG..CCGAU.G.GUACUUGGGCU...-CA.......AG
+gi|451991724:1-116              CCGGCAGUUAA.G.CCCGCCAGCG..CCGAU.G.GUAGUGCAGGC..cUCG.......GC
+gi|451991858:3-120              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACCC..gACA.......GG
+gi|451991948:1-116              CCGGAAGCUAA.G.CCCACCAGCG..CCGAU.G.GUACUGCUCGG..gAGA.......CU
+gb|JN590777.1|:288-403          ACGACCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGACC..gCAA.......GG
+gi|1045235:2-120                CCGGUAGUUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|451991801:1-114              ACGGCAGUUAA.G.CCCUCCAGCG..CCAAU.G.GUACUGGGACG...AUA.......GG
+gi|452192445:1-113              UCAGCAGUGAA.A.CGCAACCGCG..CCGAU.G.AUAGUGUGGCA...-GC.......UG
+gi|6468276:1-117                ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUAGUUGGGGC..cAGC.......GC
+gb|CP006947.1|:407829-407945    UCAGAAGUGAA.A.CGAAGUAGCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gb|GU474881.1|:c27476-27357     ACGGUAGUUAA.G.CUCUCUACCG..CCGAU.G.GUACUGCGAGG..gUUG.......CU
+gb|CP013015.1|:c265431-265313   UCGGAAGUUAA.G.CCCUCCAAGG..CCGAU.G.AUACUGCGGAG..aUUC.......CU
+gi|452192305:1-116              CCGGCCGUUAA.G.CCGCUCCGGG..CCGAU.G.GUAGUAUGGGG..gCAA.......CC
+gi|451991836:1-114              AGGACCGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCGGAC...--U.......AC
+gi|451991574:1-106              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCA---...-UA.......--
+gi|452192226:1-117              ACGGAAGUUAA.G.CUUACCAGCG..CCGAU.G.GUACUUCAUGAa.uCAA.......AC
+gb|GU474851.1|:c16045-15932     AGAGAAGUUAA.G.CCUAUCAGCG..CAGAU.G.GUACUGAGU--...---.......AA
+gi|452192104:1-113              UUGGAAGUUAA.G.CUCUCCAUCG..CCGAU.G.AUACUGCAUAA...-CG.......UC
+gb|CP014865.1|:260867-260983    UCGAACGUGAA.A.CCUCAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gb|CP013133.1|:c1167901-1167785 UCGAACGUGAA.A.CCUCAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|452192542:1-112              AGGGAAGUUAA.G.CCCGCUAGCG..CCGAU.G.GUACUGCCAA-...---.......-U
+gi|308271278:c576085-575968     ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCUCGG..gAAA.......CU
+gb|CP012042.1|:2201200-2201314  AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gi|452192422:1-112              AGGGAAGUUAA.G.CCCGUUUGCG..CCGAU.G.GUACUGCCACA...C--.......-C
+gb|M60936.1|CLBRRNAB:2-119      CCGGAAGCUAA.G.ACUCUCUGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|451991687:1-115              ACGGUAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUUGGGGC..gAAG.......GC
+gi|451991942:1-114              ACGGCCGUGAA.A.CGCCCCAGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gb|M11537.1|TFERRATN:1-117      ACAGAAGUGAA.A.CGCCGCAUCG..CCGAU.G.AUAGUGUGGGG...UCU.......CC
+gi|452192215:1-108              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCU---...-UU.......--
+gi|451992013:1-114              ACGGCCGUUAA.G.CCCUCAGCCG..CCAAU.G.GUAGUCGGACG...UAA.......GG
+gb|CP011367.1|:c2565661-2565545 UCGGAAGUGAA.A.CUGCUCUGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|CP007239.1|:c267-150         ACGGCCGUGAA.A.CGCCCCAGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gi|507148545:1-112              AGGUCCGUGAA.A.CAGCUCCGCG..CCGAU.G.AUAGUGCGGAU...---.......AC
+gi|4468666:2-115                AGGUCCGUGAA.A.CAGCUCCGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gb|AF416766.1|:2879-2995        CCGGAAGUUAA.G.CCUCCUAGCG..CCUGU.G.GUACUUUGUCU...-UA.......AG
+gb|AF416765.1|:2877-2991        CUGGAAGUUAA.G.CCUUCUAGCG..CUGAU.G.GUACUUUGUCU...-UA.......AG
+gb|CP000555.1|:357385-357499    AGGACAGUGAA.A.CGCCUCAGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|485099256:2-121              CCGGUAGUUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|526641902:1-115              ACGGAAGUUAA.G.CUCUUCGAGG..CCGAU.G.GUACUUGGGCU...-UU.......UG
+gi|507148571:1-110              AGAGAAGUUAA.G.CCCGUUUGCG..CCGAU.G.GUACUGCAG--...UUA.......--
+gi|451992027:1-104              AGAGAAGUUAA.G.CCCCAGAGAG..CCGAU.G.GUACUGCG---...-UU.......--
+gi|82523815:1059-1176           ACGGAAGCUAA.G.CCCUCCGGUG..CCGAU.G.GUACUGCCAGG..gGUG.......CC
+gi|82523856:1049-1164           ACGGUCGUUAA.G.CCCUCCAGCG..CUGAU.G.GUACUGCUUCG..gAGA.......CG
+gb|EU819142.1|:c1163-1045       UCGGAAGUUAA.G.CAUGGUCGCG..CCGAU.G.GUACUGCAGCU...-CA.......AG
+gi|330751977:c15315-15203       AGAGAAGUUAA.G.CCCAAUAGCG..CCGAU.G.GUACUGCAU--...-UU.......--
+gb|GU180083.1|:c9355-9239       ACAGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCAGGU...UUG.......UC
+gb|GU474920.1|:13810-13926      UCAGUAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|507148594:1-116              CCGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUACGGGG...GGU.......AC
+gi|451991842:1-115              CCGGAAGUUAA.G.CGCUGUUGCG..CCGAU.G.GUACUGCAUCU...-UA.......AG
+gi|452192125:1-108              AGAGAAGUUAA.G.CCCAGUUCCG..CCGAU.G.AUACUUGGAUC...---.......AA
+gi|451991816:3-117              AGGACAGUGAA.A.CGCCUCUGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gi|452192195:1-117              CCGGCCGUUAA.G.CCGCCCUGGG..CCGAU.G.GUAGUAUGGGG..gCAA.......CC
+gi|451991933:1-117              CCGGCCGUUAA.G.CCGCCCUGGG..CCGAU.G.GUAGUAUGGGG..gUAG.......CC
+gi|662019962:1-113              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...---.......AC
+gi|507148516:1-115              UCGGAAGUUAA.G.GGCGGCUACG..CUGAU.G.GUACUGCGACU...-UA.......AG
+gb|CP012909.1|:64567-64682      UCGGAAGUUAA.G.GGCGGCUACG..CUGAU.G.GUACUGCGACU...-UA.......AG
+gi|451991768:2-117              CCGGAAGUUAA.G.UGCCUCCGCG..CCAAU.G.GUACUCGGGCU...-CA.......AG
+gi|662019931:1-117              CCGGAAGCUAA.G.CCUGCCUGCG..CCGAU.G.GUACUGCACCU..gGGA.......GG
+gi|452192538:1-116              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCCCGG..gGGA.......CC
+gi|82523952:1183-1297           CCAGAAGCUAA.G.CCUCUCAUCG..CUGAU.A.AUACUUGUCCU...UUC.......AG
+gb|AF267889.1|AF267889:1-112    ACGGAAGUUAA.G.CUCUCUAGCG..CCGAU.G.GUAGUUGGGAC...CUU.......GU
+gi|507148554:1-109              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCU---...-AA.......--
+gi|662019937:1-111              UCAGAAGUUAA.G.CCUUUUAUCG..CUGAU.G.GUACUAUACAC...-AA.......GA
+gi|451991642:2-119              UCGGCCGUGAA.A.CGCUCCAGCG..CUGAU.G.GUACUUUGCCU...-UA.......AG
+gi|452192178:1-116              ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.AUAGUUGGGGG..cUGU.......CC
+gi|452192518:1-111              ACAGCAGUUAA.G.CUUUUUAACG..CCGAC.A.AUAGUUCGAUU...---.......UU
+gi|43349:2-121                  UCGGCAGUGAA.A.CCGCUCAGCG..CCGAU.G.GUAGUGCGACC..aCGC.......UG
+gi|452192101:1-116              CCGGAAGCUAA.G.ACCCACAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gi|452192124:1-117              CCGGAAGCUAA.G.CCCCUCAGCG..CCGAU.G.GUACUGCACGG..gAGA.......CC
+gi|452192434:1-116              CCGGAAGCUAA.G.CCCACCAGCG..CCAAU.G.GUACUGCACCC..uAAU.......CA
+gb|M33885.1|CYTRRAA:1-111       AGAGAAGUUAA.G.CCCACCAGAG..CCGAU.G.GUACUGCGGUA...---.......AC
+gi|452192363:1-113              ACGGCAGUUAA.G.CCUGCAUGCG..CCGAU.G.GUACUGCGGGA...-GA.......GC
+gi|452192143:1-111              CCGGCAGUUAA.G.CCCGCCCUCG..CCGAA.A.GUACUACGGAG..gUAA.......GU
+gi|452192551:1-117              UCAGAAGUUAA.G.CUCUUCAUCG..CCGAU.G.GUACUGUGCAC...-UA.......GA
+gi|451991561:1-114              UCAGAAGUUAA.G.CCUCUGAUCG..CUGAU.G.GUACUAUACAC...-AA.......GA
+gi|451991559:1-113              UCAGAAGUUAA.G.CCUUUUAUCG..CUGAU.G.GUACUAUACAC...-AA.......GA
+gi|451991595:1-114              UCAGAAGUUAA.G.CCUUUUAUCG..CCGAU.G.GUACUAUACAC...-AA.......GA
+gi|451991669:1-114              UCAGAAGUUAA.G.CCUUUUAUCG..CCGAU.G.GUACUAUACAC...-AA.......GA
+gi|452192507:1-114              UCAGAAGUUAA.G.CCUUUUAUCG..CCGAU.G.GUACUAUACAC...-AA.......GA
+gi|485099265:1-110              UCAGAAGUUAA.G.CCUUUUAUCG..CCGAU.G.GUACUAUACAC...-AA.......GA
+gi|452192550:1-116              UCAGAAGUCAA.G.CUCUUUAUCG..CCGAU.G.GUACUGCACAC...-AA.......GA
+gi|451991732:2-119              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|CP010517.1|:c1904053-1903939 AGGACCGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCGGAC...--U.......AC
+gi|48330:3-121                  UCGGCCGUGAA.A.CCGGACUGCG..CCGAU.G.GUACUAGUGCU...UCA.......AG
+gi|452192467:1-113              UCGGAAGUGAA.A.CGCAGUUGCG..CCGAU.G.GUAGUGUAGCU...---.......UG
+gi|452192232:1-115              CCGGACGUUAA.G.CCCUCCAGCG..CCCAU.G.GUACUGCAGAG...GCU.......AU
+gi|452192187:1-114              CCGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCGGGG...GGU.......AC
+gb|GU324241.1|:5261-5378        UCGGCCGUUAA.A.CUCUUCAGCG..CCAAU.G.GUACUAUGGCU...-UA.......AG
+gi|451991807:3-119              UCCGUCGUUAA.G.CCCCCUUGCG..CCGAU.G.GUACUACGUCU...-UA.......AG
+gi|451991889:1-113              AGGACAGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|451991984:1-113              AGGACAGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|451991623:16-125             UCGGAAGUGAA.A.CUUUUUAGCG..CUGAU.G.GUACUUG----...---a....a.--
+gi|330752167:c614-504           AGAGAAGUUAA.G.CACAUUUGCG..CCGAU.G.GUACUGGG---...-UU.......--
+gi|452192183:1-117              ACGGAAGUUAA.G.UCCUCCUGGG..CCGAU.G.GUACUGCAGGG..gCAA.......CU
+gi|507148490:1-116              ACGGUCGUUAA.G.CUCUUUUGCG..CCGAU.G.GUAGUUGGGGG...CUU.......CC
+gi|451991664:1-112              ACGGUCGUUAA.G.CUCUUUUGCG..UCGAU.G.GUAGUUAGGGG...CUU.......CC
+gi|452192151:1-108              AGAGAAGUUAA.G.CCCCUUAUGG..CCGAU.G.GUACUGCACAA...---.......CC
+gi|452192485:1-114              ACGGAAGUUAA.G.ACCUCCAGGG..CCGAU.G.AUACUUGGGGC...AUA.......GC
+gb|CP011489.1|:1116931-1117048  ACGGAAGUGAA.G.ACUGCCCGCG..CCGAU.G.GUACUUGGGGG..gAAG.......CC
+gb|AY242847.1|:60-175           ACGACCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGACC..gCAG.......GG
+gb|CP003883.1|:900336-900441    UCGGAAGUGAA.A.CUUUUUAGCG..CCGAU.G.AUACUUA----...---a....a.--
+gi|451991581:1-115              CUAGAAGUUAA.G.CCCAUAUACG..CUGAU.G.GUACUUGGCUG..gAAG.......UG
+gi|451991710:1-113              ACGGAAGUUAA.G.CUCUUUAGCG..CCGAU.G.GUAGUUGGGGG...CUU.......CC
+gi|662020023:1-118              CCGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.AUACUGUGCCGggcGAA.......CG
+gi|485099270:1-114              UCAGAAGUGAA.A.CGCGCAUGCG..CCGAU.G.GUAGUGUGGCU...--U.......UG
+gi|451991864:1-115              ACGACCGUUAA.G.ACCCCGAGCG..CCGAU.G.GUACUGCAUCU...-UA.......AG
+gi|452192258:1-113              UCGGUCGUUAA.G.CCCUCCAGAG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gb|GU567959.1|:c25280-25160     ACGCUCGUUAA.G.CCCUCAAUCG..CUGAU.G.GUAGUGCGGCC..uCGC.......UG
+gi|46916688:c266432-266316      UCAGAAGUGAA.A.CGCAGUUGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192300:1-117              ACGGCCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGGGCGG..gAAA.......CC
+gb|CP008700.1|:c1753988-1753871 UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991678:1-119              CCGGUAGCUAA.G.ACCCACAGCG..CUGAU.G.GUACUGCACUC..gGUA.......GG
+gi|337294156:c41069-40956       UCAGUAGUUAA.G.CCCUUCAUCG..CCGAU.G.GUACUGCACAC...-AA.......GA
+gi|451991974:1-114              UCAGAAGUGAA.A.CGCAAUAUCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991590:2-118              UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991688:1-111              ACAGAAGUUAA.G.CUCUCUAGCG..CCGAU.G.GUAGUUGGUCU...-UA.......CG
+gi|507148511:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|KF040403.1|:5221-5338        UCGGCCGUGAA.A.CGCUCCAGCG..CUGAU.G.GUACUUCGUCU...-CA.......AG
+gi|452192421:1-117              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|526641910:1-116              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|452192528:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...-UC.......UC
+gb|HM454280.1|:28084-28201      ACGGAAGUUAA.G.CUCUCUAGGG..CCGAU.G.AUACUUGGAUC..gCGA.......GA
+gb|EU285525.1|:5589-5706        UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991985:1-117              ACGAUGGUUAA.G.ACUUAAGCGG..CCGAU.G.GUACUUUGCUG..gAGA.......CG
+gi|485099284:1-117              ACGGAAGUUAA.G.CUCUUUAGCG..CCGAU.G.GUACUGCAUGG..gCAA.......CU
+gb|GU567972.1|:c27755-27638     ACGGAAGUUAA.G.CUCUGCUUCG..GCGAU.G.GUACUGCCGGG..uUUC.......CU
+gi|452192392:1-115              CCGGAAGCUAA.G.CCCGAUUGCG..CUGAU.G.GUACUGCACCU..gGGA.......GG
+gi|452192349:1-115              UCGGAAGUUAA.G.CCCGUCAGCG..CCGAU.G.AUACUGCCCUG..gAGA.......CG
+gi|451991555:2-117              CCGGCAGUUAA.G.CCCCCCAGCG..CCGAU.G.AUACUGUGCCG..gCAG.......CG
+gb|AY744399.1|:60759-60876      UCGGUCGUGAA.A.GCUUGUAGCG..CCGAU.G.GUACUUUGUCU...-UA.......AG
+gi|451991904:1-114              UCAGAAGUGAA.A.CGCAAACGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991703:3-119              UCGGCCGUGAA.A.AUCCCCAGCG..CCCAU.G.GUACUGUGCCU...-CA.......AG
+gi|452192138:1-108              ACAGAAGUUAA.G.CCCUCUAGCG..CCGAU.G.GUACUGCG---...-AA.......--
+gi|451992002:1-114              UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192188:1-119              CCGGAAGCUAA.G.CCCCUCUGCG..CCGAU.G.GUACUGCACGG..gAGA.......CU
+gi|452192366:1-117              UCGGAAGUUAA.G.CCCCGUCGGG..CCGAU.G.AUACUACGUGG..gCAG.......CU
+gi|452192416:1-114              CCGGAAGUUAA.G.CACUGUUGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gi|451991695:2-118              UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991645:2-118              UCAGAAGUGAA.A.CAGUACAUCG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gb|M33888.1|FVBRRAA:2-119       CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|507148466:1-113              ACAGCAGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUUGGAGC..uCAC.......GC
+gi|452192332:1-112              AGGGAAGUUAA.G.CCUAUCAGCG..CCGAU.G.GUACUGCUAUA...---.......CC
+gb|JN092297.1|:185-302          UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|374855139:12123-12240        CCGGCAGUUAA.G.CCCGCUAGCG..CCGAU.G.GUACUUGAGGG..gCGA.......CC
+gi|451991791:1-113              UCGGAAGUUAA.G.CCAGCCAUCG..CCGAU.G.AUACUGCAAGG...-GA.......GC
+gi|507148514:1-113              ACGGAAGUCAA.G.CUCUUCAGCG..CUGAU.G.GUACUUGGGGU...-UA.......CC
+gi|452192387:1-116              ACGGAAGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUUGGGGG...UCU.......AC
+gb|AY281352.1|:c916-797         ACGGAAGUUAA.G.CUCUCUACCG..CCGAU.G.GUACUGCAUGG..gUAA.......CU
+gb|GU474930.1|:5530-5646        UCGGCCGUUAA.A.UUCCUCAGCG..CCGAU.G.GUACUAUGUCU...-UA.......AG
+gb|CP007141.1|:c616038-615920   CCGGCCGUUAA.G.CCGCUCUGGG..CCGAU.G.GUAGUAUGGGG..gCAG.......CC
+gi|452192240:1-109              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCU---...-UU.......--
+gi|451991978:2-119              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|452192500:1-109              AGAGAAGUUAA.G.CCCGUUUGCG..CCGAU.G.GUACUGCAU--...-A-.......-C
+gi|485099222:1-117              ACGGAAGUGAA.A.CGCGCCAGCG..CCGAU.G.GUACUGGGACC..gCGA.......GG
+gi|451991862:4-118              UCAGAAGUGAA.A.CACAGUAUCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|507148582:1-114              UCGGCCGUGAA.A.CGUUCCAGCG..CUGAU.G.GUACUUUGUCU...-UA.......AG
+gi|662019991:1-103              ACGGAAGUUAA.G.ACCUCCUGGG..GCGAC.G.AUACU------...---gc..aa.--
+gi|452192177:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|452192280:1-115              ACGGAAGUUAA.G.CCUCGCAACG..CCGAU.G.AUACUGUGCUG..gAGA.......CG
+gi|452192548:1-105              AGAGAAGUUAA.G.CCCGCCUGCG..CAGAU.G.GUACUGCA---...UUU.......--
+gb|CP011075.1|:188893-189010    ACGACCGUUAA.G.CCCUCUAGCG..CCGAU.G.GUACUUGCCCA...-UU.......CG
+gb|EU723620.1|:400-513          ACAGAAGUUAA.G.CCCUUCAGCG..CCGAU.G.GUACUUGGGCG...-UA.......UG
+gi|507148502:1-115              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|507148461:1-117              CCAGUCGUUAA.G.CACCGUUGCG..CUGAU.G.GUACUGCGUCU...-UA.......AG
+gb|CP012160.1|:c2905493-2905375 CCAGCCGUUAA.G.CACCGUUGCG..CUGAU.G.GUACUGCGUCU...-UA.......AG
+gi|452192130:1-115              ACGGCCGUUAA.G.CCCACCAGCG..CCGAU.G.GUACUUGGGGG..gAGA.......CC
+gi|452192163:1-116              CCGGAAGCUAA.G.CUUCACUGCG..CCGAU.G.GUACUGCACCU..gCGA.......GG
+gi|452192494:1-113              CCGGUCGUUAA.G.UCUCUUUGCG..CUGAU.G.GUACUGCCCUG...UGG.......UG
+gi|452192254:1-115              UCGGCCGUGAA.A.CGCCCCUGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gi|452192299:1-117              CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCACUG..gUGA.......CG
+gi|451991831:1-113              AGGACAGUGAA.A.CGACUUAGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gi|485099215:1-111              AGAGAAGUUAA.G.CCCGUCUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|452192243:1-114              ACGGAAGUGAA.A.CGCGCCUGCG..CCGAU.G.GUACUCGGCCC..gCAA.......GG
+gi|374852364:37530-37645        AGAGAAGUUAA.G.CCCCGCACCG..CCGAU.G.GUACUGCCGGG..uUAC.......CC
+gi|374852692:c17317-17202       AGAGAAGUUAA.G.CCCCGCAGGG..CCGAU.G.GUACUGCACGG..gCAA.......CC
+gb|GU567999.1|:c14701-14585     UCAGAAGUGAA.A.ACGCUCAGCG..CCGAU.G.AUAGUGCGGGG...UCU.......CC
+gi|452192097:1-113              ACGGAAGUUAA.G.ACCUCCAGGG..CUGAU.G.AUACUUGGACC..gCAG.......GG
+gi|451991845:1-115              AGAGAAGUUAA.G.CCCGCCAGCG..CCGAU.G.GUACUGCGGGG..gGGA.......CC
+gi|959677888:1189303-1189416    AGGACCGUGAA.A.CGACUCCGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gb|EU686608.1|:c9613-9494       ACGGCAGUUAA.G.CCCUCUACCG..CCGAU.G.GUACUGCGAGG..gUUG.......CU
+gb|GU474882.1|:11471-11587      UCGGCCGUCAA.A.CGCUGCAUUG..CCGAU.G.GUAGUGCUUGU...CUA.......GC
+gi|507148636:6-125              UCAGAAGUGAA.A.CCUCUUAGCG..CUGAU.G.GUAGUGUGGGG...-UU.......AC
+gb|AY744396.1|:c42608-42492     UCAGAAGUGAA.A.CCACUUAGCG..CCGAU.G.GUAGUGUGGUG...--C.......GU
+gb|EF157669.1|:c10980-10866     AGGACCGUGAA.A.CACCUCAGCG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gb|GU474853.1|:24795-24910      CCGGCCGUGAA.A.CACUUUAGCG..CCAAU.G.GUACUGCAGGC...-UC.......AC
+gi|452192271:1-117              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|452192088:1-115              UCGAAUGUGAA.A.CCUCAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|4468257:2-115                AGGACAGUGAA.A.CGCCUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|452192393:1-115              UCGGCCGUGAA.A.CCAGUCUGCG..CCGAU.G.GUACUGUGGCU...-CA.......AG
+gb|GU452709.1|:181-299          ACGAUGGUUAA.G.ACCUAAUCGG..CCGAU.G.AUACUAUGCUG..gAGA.......CG
+gi|452192161:1-114              UCGGCCGUUAA.G.CUCUCCAGCG..CCAAU.G.AUACUCCGGUU...-UU.......AA
+gi|526641879:3-119              UUAGAAGUGAA.A.CGCUGUAACG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gb|CP012370.1|:152653-152770    ACGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGGGGAG...-UA.......UU
+gi|485099261:3-120              UCGGCCGUUAA.A.CUCCUCAGCG..CCAAU.G.GUACUAUGGCU...-CA.......AG
+gb|AY763503.1|:255-370          ACGGCCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGACC..gCAG.......GG
+gi|451992008:1-114              AGGACAGUGAA.A.CGACUUUACG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gb|CP007501.1|:37249-37364      AGGACAGUGAA.A.CGACUUUACG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gi|452192279:1-114              UCAGAAGUGAA.A.CGCGACCGCG..CCGAU.G.GUAGUGUGGCA...-GU.......UG
+gi|451991923:1-113              ACGGAAGUUAA.G.CCUCGCAACG..CCGAU.G.AUACUGUGCUG..gAGA.......CG
+gi|452192123:1-113              ACAGAAGUGAA.A.CGUUGUAGCG..CCGAU.G.GUAGUGUGGCA...-UU.......CG
+gi|451991659:3-121              CCGGAAGCUAA.G.CCUACCUGCG..CUGAU.G.GUACUGCACCU..gGGA.......GG
+gi|451991699:1-112              CCAGAAGCUAA.G.ACUCUUUGCG..CCGAU.G.GUACUGCACUU..uUGU.......GG
+gi|452192153:1-116              CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gGAA.......GG
+gi|452192134:2-120              CCGGAAGCUAA.G.CUCGAUUGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|451991872:2-120              CCGGAAGCUAA.G.ACCCACAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gi|662020002:3-118              CCGGAAGCUAA.G.CCCUCCUGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|452192175:1-116              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCCCUG..gCGA.......CG
+gi|452192364:1-114              CCAGCCGUUAA.G.UGCCUUAGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gi|485099236:1-117              ACAGCAGUUAA.G.UCCUCCAGCG..CCGAU.G.GUACUAUAGGG..gCAG.......CC
+gi|662020013:1-113              AGAGUAGUUAA.G.CCCGCCAGCG..CCGAU.G.GUACUGCAGGG..gAGA.......CU
+gi|67003493:956-1069            UCGGUCGUUAA.G.CCCUCCAGAG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gi|485099268:1-114              UCGGCCGUGAA.A.CGCUCCAGCG..CUGAU.G.GUACUUUGUCU...-UA.......AG
+gi|452192129:1-116              CCGGUAGUUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|452192471:2-117              ACAGAAGUGAA.A.CAGCUCAGCG..CCGAU.G.AUAGUGUGGGA...-GU.......UC
+gi|297374631:c14625-14508       ACGGAAGUUAA.G.CUCUCUAGGG..CCGAU.G.AUACUUGGAUC..gCGA.......GG
+gb|S39231.1|:2-119              UCGGCCGUCAA.A.CGCUCCAGCG..CCAAU.G.GUACUAUGUCU...-CA.......AG
+gi|1045040:2-119                CCGGAAGCUAA.G.CCCACCAGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gb|M34759.1|MAGRRAA:1-118       UCGGAAGUGAA.A.CCGCUUAGCG..CCGAU.G.AUAGUGCGACA...GGU.......UG
+gi|507148570:1-110              AGAGAAGUUAA.A.CACAUUAGCG..CUGAU.G.GUACUGGU---...UUU.......--
+gi|451991805:1-114              CCAGAAGCUAA.G.CCUCUCAUCG..CUGAU.A.AUACUGAUCCU...UGC.......AG
+gi|861108:1-119                 UCGGAAGUUAA.G.CUUCUUGGAG..CCGAU.G.GUACUGCCAGG..gCAA.......CC
+gi|662019990:1-117              CCGGAAGCUAA.G.CCCAACAGCG..CUGAU.G.GUACUGCACCC..gGGA.......GG
+gi|452192509:4-120              CCGGAAGCUAA.G.CCUACCUGCG..CUGAU.G.GUACUGCACCU..gGGA.......GG
+gi|452192222:1-114              ACGGAAGUGAA.A.CGCGCCAGCG..CCGAU.G.GUACUGGGACC..gCAG.......GG
+gi|451991663:1-118              CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gACA.......GG
+gi|452192499:1-117              CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gACA.......GG
+gi|451991825:1-114              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......AC
+gi|662019921:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...CCU.......CC
+gi|451991794:1-112              AGGACGGUGAA.A.CGCUCCCGCG..CCAAU.G.AUAGUAGGCAU...---.......UC
+gi|452192465:1-115              ACGGAAGUUAA.G.ACCUUCAGGG..CUGAU.G.AUACUUGGACC..gCAG.......GG
+gb|CP001078.1|:c3376625-3376505 AGGAAAGUUAA.G.GUCUACAGCG..CUGAU.G.GUACUGCACGG..gAGA.......CU
+gi|406718232:c3565558-3565438   AGGAAAGUUAA.G.GUCUACAGCG..CUGAU.G.GUACUGCACGG..gAGA.......CU
+gi|451991649:1-117              ACGAAGGUUAA.G.CUUCAAAGCG..CUGAU.G.GUACUGCAGGG..gAGG.......UC
+gb|L37448.1|ROORRB:3-118        UCGGCCGUGAA.A.CACUCCAGCG..CCUAU.G.GUACUGCGGCU...-UA.......AG
+gb|CP012371.1|:c1248792-1248677 AGGGUCGUGAA.A.CGAAGUCGCG..CCGAU.G.AUAGUGUGUUU...---.......UC
+gi|451991927:2-118              UCGAACGUGAA.A.CCUCGUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|967041:2-119                 CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACCC..gAGA.......GA
+gi|451991996:1-117              ACGGCAGUUAA.G.CUCUCCAGCG..CCGAU.G.GUACUUGGGAC..gGUG.......GU
+gi|451991610:1-112              ACGGAAGUUAA.G.CCCCUCUGGG..CCGAU.G.AUACUGCACGG..gCAG.......CU
+gb|CP005488.1|:292160-292273    AGAGAAGUGAA.A.CACAUUAGCG..CUGAU.G.GUACUGGUUU-...---.......-A
+gi|451992033:1-106              AGAGUAGUUAA.G.CCCUGGAGAG..CCGAU.G.GUACUGCUU--...-A-.......-A
+gi|452192493:c107-1             ACAGAAGUUAA.G.CCCACCAGCG..CCGAU.G.GUACUACG---...-AA.......--
+gi|452192323:1-113              AGGACAGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|4468788:2-115                AGGACAGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|330862872:c7391-7275         UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|DQ267496.1|:5711-5826        UCGGAAGUUAA.G.CCCUCUCGCG..CCGAU.G.GUACUGCGUUC...---.......AC
+gi|451992009:1-113              AGGACAGUGAA.A.CGCCUCAGCG..CCGAU.G.AUAGUGCGCAU...---.......UC
+gi|452192140:1-113              ACGGCCGUUAA.A.UGCCCUAGCG..CCUAU.G.GUACUUCAUCU...-UA.......AG
+gb|EU644449.1|:4888-5001        ACGGCCGUUAA.A.UGCCCUAGCG..CCUAU.G.GUACUUCAUCU...-UA.......AG
+gi|451991910:3-121              UCGGCCGUGAA.A.UCCCUCUGCG..CCCAU.G.GUACUGCGUCU...-CA.......AG
+gb|CP006651.1|:34556-34672      UCGGCAGUUAA.G.CGCCGUCGCG..CCAAU.G.GUACUGCGUCC...-UA.......AG
+gi|451991656:2-119              UCGGCCGUGAA.A.UGCCCCAGCG..CCUAU.G.AUACUGCGUCU...-CA.......AG
+gi|452192460:1-115              UCGAACGUGAA.A.CCUUAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|452192236:1-113              ACAGAAGUGAA.G.UCCUCCAGCG..CCGAU.G.GUACUUGGGCC..gCCG.......GG
+gi|452192436:1-115              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUAGUUGGGGC..cAGC.......GC
+gi|451991899:1-117              ACGGAAGUUAA.G.CUCUCCAGCG..CCGAU.G.GUAGUUGGGGC..cAGC.......GC
+gi|451991993:1-114              ACGGAAGUUAA.G.CUCUCCAGCG..CCGAU.G.GUAGUUGGCGG..gACA.......CC
+gi|507148440:2-120              CCGGAAGCUAA.G.CCUGACAGCG..CCGAU.G.GUACUGCAACC..gAAG.......GG
+gi|507148615:1-117              CCGGAAGCUAA.G.ACCUGGCACG..GCGAU.G.GUACUGCACCU..gGAA.......GG
+gi|451991743:1-117              CCGGAAGCUAA.G.CCUUACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gb|M16170.1|AUTRRA:2-119        CCGGAAGCUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|452192365:1-116              CCGGAAGCUAA.G.CCCCCGAGCG..CCGAU.G.GUACUGCGGGG...UCA.......GC
+gi|530669580:c2208543-2208427   UCAGAAGUGAA.A.CAGUGCAUCG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gi|452192115:1-117              ACGGAAGUUAA.G.CCUCACUGGG..CCGAU.G.GUACUGCACGC..gAAA.......GU
+gi|452192118:3-120              UCGGCCGUGAA.A.CGCUCCAGCG..CUGAU.G.GUACUUUGCCU...-UA.......AG
+gi|507148482:1-117              CCGGUAGUUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACGA..gGGA.......UC
+gi|662019992:1-115              UCGGCAGUUAA.G.CCGCUAUGCG..CCGAU.G.GUAGUCUGGGA...-AC.......GC
+gb|U78300.1|TCU78300:342-457    AGGACAGUGAA.A.CACCUCAGCG..CCGAU.G.AUAGUGCGCAU...---.......UC
+gi|636795890:259502-259616      AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--C.......AC
+gi|451992010:1-115              UCGGCCGUCAA.A.CGCUUUCGCG..CCAAU.G.GUACUAUGUCU...-CA.......AG
+gi|526641903:2-116              CCGGAAGCUAA.G.CCUGACAGCG..CCGAU.G.GUACUGCAACC..gAAG.......GG
+gi|451992025:1-113              ACAGAAGUUAA.G.UCCUCCAGCG..CCUAU.G.GUACUGCGGGG..gUAA.......CC
+gi|452192110:1-116              ACGGAAGUUAA.G.CCUCGCAACG..CCGAU.G.AUACUGUGCUG..gAGA.......CG
+gi|452192184:1-110              AGAGAAGUUAA.G.CCCCGCAGCG..CCGAU.G.GUACUGCCCGA...--A.......AA
+gi|485099259:1-114              UCGGCAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCAUAU...-UU.......AU
+gi|451991877:1-117              ACGGAAGUUAA.G.CCCCUCAGGG..CCGAU.G.AUACUGCACGG..gUAG.......CU
+gi|451991798:2-119              ACGGCCGUGAA.A.CGCCCCUGCG..CCCAU.G.GUACUUCGUCU...-UA.......AG
+gb|CP007440.1|:1428619-1428734  UCGGCCGUUAA.A.CUCCCCAGCG..CCGAU.G.GUACUAAGUCU...-CA.......AG
+gi|451991714:2-120              CCGGAAGUUAA.G.CUUCUCAGCG..CCGAU.G.GUACUGCACGG..gGGA.......CC
+gi|507148555:1-109              ACGGAAGUGAA.G.CCCUCCAGCG..CCGAU.G.GUACUGAU---...-UA.......--
+gi|452192336:1-109              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCU---...-UU.......--
+gi|507148601:1-116              CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCGGGG..gGGA.......CC
+gi|391827:2-119                 CCGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gb|CP008936.1|:314708-314825    UCGGCCGUGAA.A.GCCUCCAGCG..CCAAU.G.GUACUCCGUCU...-UA.......AG
+gi|452192360:1-110              AGAGAAGUUAA.G.CCCGCCAGAG..CCGAU.G.GUACUGCAGUA...---.......AC
+gi|451991655:2-116              CCGGAAGCUAA.G.ACUCUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|391696:2-119                 CCGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACCG..gGGA.......CG
+gi|452192244:1-116              CCGGAAGCUAA.G.CCUACCAGCG..CCGAU.G.GUACUGCACCC..gAGA.......GA
+gi|451992043:1-115              ACGGAAGUUAA.G.CCCUCCAGGG..CCGAU.G.AUACUAUGACC..gUGA.......GG
+gi|507148565:1-108              AGAGAAGUUAA.G.CCUAUCAGCG..CCGAU.G.GUACUGCG---...---u....u.--
+gi|451991804:1-112              ACGGAAGUUAA.G.CCCCUCUGGG..CCGAU.G.AUACUGCACGG..gUAG.......CU
+gi|452192539:1-116              ACGGAAGUUAA.G.CUCUUUAGCG..UCGAU.G.GUACUGCAUGG..gAGA.......CU
+gi|507148515:1-114              CCGGAAGUCAA.G.CACUUCAUCG..CUGAU.A.AUACUGCAGGG...UCC.......CC
+gb|EF667147.1|:21-137           CUGGUAGUCAA.G.CACUUCAUCG..CCGAU.A.AUACUGCAGGG...UCC.......CC
+gi|452192262:1-108              AGAGCAGUUAA.A.CCUUUUAGCG..CAGAU.G.GUACUACG---...-CA.......--
+gi|452192260:1-117              ACAGCAGUUAA.G.UCCUCCAGCG..CUGAU.G.GUACUAUGGGG..gUGA.......CC
+gi|451991969:1-116              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|507148538:1-111              AGAGAAGUUAA.G.CCCGUUUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|507148541:1-111              AGAGAAGUUAA.G.CCCGAUUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|507148578:1-111              AGAGAAGUUAA.G.CCCGCCUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|452192377:1-111              AGAGCAGUUAA.G.CCCAAUAGCG..CCGAU.G.GUACUGAG--U...AAA.......--
+gi|452192448:1-111              AGAGAAGUUAA.G.CCUCGUCACG..CCGAU.G.GUACUGCUAU-...---.......-A
+gi|507148495:1-115              AGGACCGUGAA.A.CGACUCCACG..CCGAU.G.AUAGUGCGGAU...--U.......GC
+gi|451991723:2-116              AGGAAAGUGAA.A.CGCCUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|451991876:1-117              CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCGCGG..gCGA.......CU
+gi|452192194:1-114              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUAGUCGGACU...-UA.......CG
+gi|662020016:1-115              UCGGACGUGAA.A.CCAGACUGCG..CCGAU.G.GUACUAUCGCU...-UA.......AG
+gi|662019973:1-114              UCGGACGUGAA.A.AUCCCCAGCG..CCAAU.G.GUACUGUGUCU...-UA.......AG
+gi|4468059:2-115                AGGACAGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|452192537:1-110              UCAGAAGUGAA.A.CAGACCUGCG..CCGAU.G.GUAGUGUGGCG...-UU.......GC
+gi|452192491:1-112              UCAGAAGUGAA.A.CAGGCCUGCG..CCGAU.G.GUAGUGUGGUU...--C.......GC
+gi|451991667:1-109              ACGGAAGUUAA.G.CCCUCCAGGG..CCGAA.G.GUACUCCG---...-CA.......--
+gi|452192199:1-115              CCGGAAGCUAA.G.GCCUGACACG..GCGAG.G.GUACUGCACUC..gAUA.......GG
+gi|507148465:1-117              CCAGCCGUUAA.G.UGCCUUAGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gi|452192468:1-115              ACAGCAGUUAA.G.CCCUCCAGCG..CUGAU.G.GUACUGCGUGG..gUGA.......CC
+gi|452192402:1-116              ACGGAAGUUAA.G.ACCUCCAGCG..CCGAA.G.AUACUCGGGCUa.aCCA.......AG
+gi|452192379:1-109              AGAGAAGUUAA.G.CCGCUCAGCG..CUGAU.G.GUACUGCCC--...-UU.......--
+gi|451991992:5-123              CCGGCCGUUAA.G.CCGCCCUGGG..CCGAU.G.GUAGUAUGGGG..gCAG.......CC
+gb|KP239990.1|:c22054-21936     CCGGCCGUUAA.G.CCGCCCUGGG..CCGAU.G.GUAGUAUGGGG..gUAG.......CC
+gi|452192274:1-117              ACAAAAGUUAA.G.UCCUCCUGCG..CCUAU.G.GUACUGCAUUG..gUAA.......CG
+gi|452192294:1-117              ACAAAAGUUAA.G.UCCUCCAGCG..CCUAU.G.GUACUGCAUUG..gUAA.......CG
+gi|451992022:1-118              ACGGAAGUUAA.G.ACCUCUAGCG..CCGAU.G.GUACUGCAGGG..gAGG.......CC
+gb|L24488.1|HBTRRNA5S:2-119     UCGGCCGUGAA.A.CGCUCCAGCG..CUGAU.G.GUACUUCGCCU...-CA.......AG
+gi|47147:1-117                  ACGGUCGUUAA.G.CUCUUCUGUG..CCGAA.G.GUAAUUGGGGG..cUGU.......CC
+gi|1045273:2-119                CCGGAAGCUAA.G.UCCUCCAGCG..CCGAU.G.GUACUGCAUGC..gUGA.......GC
+gi|451991692:2-119              CCGGAAGCUAA.G.CCUCACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|452192225:1-115              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gUGA.......GG
+gi|452192182:1-115              CCGGAAGCUAA.G.CCCUCCAGCG..CCAAU.G.GUACUGCACCC..uAAU.......CA
+gi|452192410:2-117              CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACCU..uAAU.......CA
+gi|452192230:1-115              CCGGAAGCUAA.G.CCUGCCCGCG..CCGAU.G.GUACUGCACAC..gCCG.......GU
+gi|452192289:1-113              CCAGUAGCUAA.G.CCUCUUUGCG..CUGAU.G.GUACUGCACUU..uGAU.......GG
+gb|M16174.1|PISRRA:2-120        CCGGAAGUUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCAACC..gAGA.......GG
+gb|M16171.1|CURRRA:2-119        CCGGAAGCUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCAAGG..gGGA.......CC
+gi|451991709:1-115              CCGGAAGCUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|1045203:2-119                CCGGAAGCUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCACUG..gGUA.......CG
+gb|M29856.1|BTTDNA:1-115        ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGGGA...-UG.......AC
+gi|507148590:1-116              CCGGUCGUUAA.G.CCGCCCAGCG..CCGAU.G.GUACUGCCCUG...UGG.......UG
+gi|452192164:1-117              CCGGUAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCAUGG..gAGA.......CU
+gb|AF116563.1|:6176-6294        CCGGUAGUUAA.G.CCCGCCAGCG..CCGAU.G.GUACUGCACUG..gUGA.......CG
+gi|391775:1-118                 CCGGUCGUUAA.G.UCUCUUUGCG..CUGAU.G.GUACUGCCCUG...UGG.......UG
+gi|452192205:1-115              CCGGAAGUUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gi|452192185:1-116              CCGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCACCG..gGGA.......CG
+gi|391740:2-119                 CCGGAAGUUAA.G.CCUUCCAGCG..CCGAU.G.GUACUGCACUG..gGGA.......CG
+gi|391601:2-120                 CCGGAAGUUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCAUGG..gAGA.......CU
+gi|452192529:2-119              CCGGAAGCUAA.G.CCUUACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|24427855:5230-5347           CCGGAAGCUAA.G.CCUUACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|126347282:c1469819-1469702   CCGGAAGCUAA.G.CCUUACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|507148604:1-115              CCGGAAGCUAA.G.CCUUACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gb|M59335.1|STMJL855S:2-119     CCGGAAGCUAA.G.CCUCACAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|451991722:2-120              CCGGUAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|452192444:1-116              CCGGUAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gGGA.......GG
+gi|452192204:1-115              CCGGAAGCUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCCCUG..gAGA.......CG
+gi|967042:2-119                 CCGGAAGCUAA.G.CCUUUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|452192513:2-120              CCGGAAGCUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCAUGG..gGGA.......CU
+gi|451991818:1-117              CCGGAAGCUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCAUGG..gGGA.......CU
+gi|452192144:3-121              CCGGAAGCUAA.G.CCCGCCAGCG..CCGAU.G.GUACUGCACCC..cCAC.......GG
+gi|1045222:2-120                CCGGAAGCUAA.G.CCCACCAGCG..CCGAU.G.GUACUGCACUC..gAAG.......GA
+gi|1045216:2-120                CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gUCA.......GG
+gi|967055:2-119                 CCGGAAGUCAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCAACC..gAGA.......GG
+gi|451991650:2-119              CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gACA.......GG
+gi|1045287:3-121                CCGGAAGCUAA.G.CUCCCCAGCG..CCGAU.G.GUACUGCACCC..gGUG.......GG
+gi|2198532:5734-5852            CCGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCACUC..gACA.......GG
+gi|662020008:1-115              CCGGAAGCUAA.G.GCCACCUGCG..CCGAU.G.GUACUGCACUC..gACA.......GG
+gi|8250508:28-145               CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.GUACUGCACUC..gAAG.......GG
+gi|451991875:3-116              CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.AUACUACCCUU...---.......CC
+gb|CP009483.1|:c1403850-1403736 CCGGAAGCUAA.G.CCUGUCAGCG..CCGAU.G.AUACUGCCCUU...--C.......UC
+gi|967054:3-116                 CCGGAAGCUAA.G.CCUGCCAGCG..CCGAU.G.AUACUACCCAU...---.......CC
+gi|507148600:1-115              CCGGAAGUUAA.G.CCUUUCUACG..CCGAU.G.GUACUGCAGGC..gGGA.......GC
+gi|507148471:1-117              CCGGAAGUUAA.G.CCUCCCAGCG..CUGAU.G.GUACUGCACAC..gCGA.......GU
+gi|485099223:1-116              CCGGAAGUUAA.G.CCUCCACACG..CUGAU.G.GUACUGCCCAC..gCCA.......GU
+gi|451991620:2-119              CCGGUCGUUAA.G.CCUUCCAACG..CUGAU.G.GUACUGCACGA..gGGA.......UC
+gi|756351692:c165-48            CCGGAAGUUAA.G.CCUUUCUACG..CCGAU.G.GUACUGCAGGC..gGGA.......GC
+gb|CP008796.1|:c1295779-1295664 ACGGAAGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUGGGGCG..uUAC.......CG
+gi|662019996:1-113              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUACUUGGAUC..gAAG.......GG
+gi|507148474:1-117              CCGGAAGCUAA.G.CCUGCCUGCG..CCGAU.G.GUACUGCACCU..gGGA.......GG
+gi|451991745:3-120              CCGGAAGCUAA.G.CCUGGUUACG..CUGAU.G.GUACUGCACUC..gGGA.......GG
+gb|M16204.1|CORRRAXB:3-118      CCGGAAGCUAA.G.CCCACCUGCG..CCGAU.G.GUACUGCACCU..gGGA.......GG
+gi|967057:2-119                 CCGGAAGCUAA.G.CCUCUCAGCG..CCGAU.G.GUACUGCCCUG..gAGA.......CG
+gi|452192223:1-115              CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCACUC..gCCA.......GG
+gi|967058:2-120                 CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCCCUG..gAGA.......CG
+gb|M16172.1|CFIRRA:2-119        CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCACUC..gCCA.......GG
+gi|39490:2-120                  CCGGAAGCUAA.G.ACCCACAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gi|757805207:c1933401-1933286   CCGGAAGCUAA.G.GCCUAGUACG..GCGAU.G.GUACUGCACUC..gGAA.......GA
+gi|781876604:c1571253-1571138   CCGGAAGCUAA.G.GCCUAGCACG..GCGAU.G.GUACUGCACUC..gAGA.......GG
+gi|507148472:1-117              CCGGAAGCUAA.G.GCCUGGCACG..GCGAU.G.GUACUGCACCC..gACA.......GG
+gi|507148609:1-117              CCGGAAGCUAA.G.ACCUGGCACG..GCGAU.G.GUACUGCACCC..gACA.......GG
+gi|118764602:c1525337-1525222   UCGGAAGCUAA.G.GCCUAGCACG..GCGAU.G.GUACUGCACUC..gAGA.......GG
+gb|CP010437.1|:c1617392-1617277 CCGGAAGCUAA.G.GCCUAGCACG..GCGAU.G.GUACUGCACUC..gAGA.......GG
+gi|451991867:1-117              CCGGAAGCUAA.G.ACCCACAGCG..CCGAU.G.GUACUGCACCC..gGGA.......GG
+gb|CP007003.1|:1078475-1078593  CCGGAAGCUAA.G.CCCACCAGCG..CCGAU.G.GUACUGCACCC..gCGA.......GG
+gi|451991990:2-120              CCGGAAGCUAA.G.ACCCACAGCG..CCCAU.G.GUACUGCACUC..gCGA.......GG
+gi|451991643:1-110              ACGGUAGUUAA.G.CUUCUCUGCG..CCAAU.G.GUAGUUGGGGG...UUU.......CC
+gi|16415123:c148470-148353      ACGGUAGUUAA.G.CUUCUCUGCG..CCAAU.G.GUAGUUGGGGG...CUU.......CC
+gi|507148522:1-115              ACGGUAGUUAA.G.CUUCUCUGCG..CCAAU.G.GUAGUUGGGGG...UUU.......CC
+gi|507148503:1-116              ACGGUAGUUAA.G.CUUCUCUGCG..CCAAU.G.GUAGUUGGGGG...CUU.......CC
+gb|AF160963.1|AF160963:480-597  ACGGUAGUUAA.G.CUUCUCUGCG..CCAAU.G.GUAGUUGGGGG...-CU.......UC
+gb|S73542.1|:2-119              CCGGAAGCUAA.G.ACUCUCAGCG..CCGAU.G.GUACUGCAGGG..gGGA.......CC
+gi|452192557:1-114              ACAGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUCGGGUC...--G.......AU
+gi|39765:1-117                  ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUUGGGGU..gUUA.......GC
+gi|452192384:1-115              ACAGCAGUUAA.G.CCCUCCAGGG..CCGAU.G.GUACUUGGGGC..uCAC.......GC
+gi|452192390:1-115              ACAGCAGUUAA.G.UCCUCCAGGG..CCGAU.G.GUACUUGGGGC..uCAC.......GC
+gi|452192433:1-114              ACGGUAGUUAA.G.ACCUCCAGGG..CCGAU.G.AUACUUGGGGC...AUA.......GC
+gi|451991844:1-115              ACGAUGGUUAA.G.CUUCAAAGCG..CCGAU.G.GUACUGCACUG..gAGA.......CG
+gi|451991810:1-115              ACGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGGGGAG...-UA.......UU
+gi|507148488:1-113              ACGGCAGUUAA.G.CAUCUUUGUG..CCGAU.A.AUACUUGGCUG..gAAA.......CG
+gi|452192273:1-109              ACGGAAGUGAA.G.CCCUCCAGCG..CCGAU.G.GUACUGAU---...-UA.......--
+gi|451991905:1-117              ACGGUAGUUAA.G.CUUCUCAGUG..CCGAU.G.AUACUAGGAUG..gAGA.......CG
+gi|451991596:1-117              ACGAUGGUUAA.G.CUUCUAAGCG..CCGAU.G.GUACUGCAAGG..gUGA.......CC
+gi|662019925:1-117              ACGAAGGUUAA.G.CCUAUUGAGG..CCGAU.G.GUACUGCACGG..gAGA.......CU
+gi|507148469:1-115              ACGACGGUUAA.G.CUACUAAGGG..CCGAU.G.AUACUGCAGGA..gAGG.......UC
+gb|CP002410.1|:c2758965-2758850 ACGAAGGUUAA.G.CUUCAAAGCG..CCGAU.G.GUACUGCACUG..gAGA.......CG
+gi|451991560:1-117              ACGAAGGUUAA.G.AACCAAAGCG..CCGAU.G.GUACUGCAGGG..gCAG.......CC
+gb|M36157.1|CLORRAAF:1-116      ACGGAAGUUAA.G.CUUUCCAGCG..CCGAU.G.GUAGUUGGGGG...UCU.......CC
+gb|CP007739.1|:254201-254315    ACGGAAGUUAA.G.CUUCUCAGCG..CCGAU.G.GUAGUUGGGGC...AUU.......GC
+gi|451991748:1-104              ACGGAAGUUAA.G.CCCUCCAGCG..CCGAU.G.GUAGUUGGGGC..cAGC.......GC
+gi|452192278:1-116              ACGGUAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUCGGGGG...CUU.......CC
+gi|451991707:1-113              ACAGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUUGGUUU...---.......UU
+gi|485099279:1-115              ACGGAAGUUAA.G.CUCUCUAGCG..CCGAU.G.GUAGUUGGGAC...CUU.......GU
+gi|507148473:1-117              ACGGAAGUUAA.G.CUCUCCAGCG..CCGAU.G.GUAGUUGGGGC..cAGC.......GC
+gi|451991966:1-107              ACGGAAGUUAA.G.CUCUUUAGCG..CCGAU.G.GUAGUUGGGGG...CUU.......CC
+gi|452192317:1-116              ACGGUAGUUAA.G.CUCUCCAGCG..CCGAU.G.AUAGUUGGGGG...UUU.......CC
+gi|507148519:1-113              ACGACCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGGACC..gCAG.......GG
+gb|CP010587.1|:c2342-2226       ACGGAAGUUAA.G.CUCUUUAGCG..CCAAU.G.GUAGUUGGGAC...UUU.......GU
+gi|451991759:1-116              ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUUGGGGG...CUU.......CC
+gi|507148493:1-116              UCGGAAGUUAA.G.CUUUCCAGCG..CCGAU.G.GUAGUUGGGGG...UUU.......CC
+gi|451991606:1-115              ACGGAAGUUAA.G.CUCUCUAGCG..CCGAU.G.GUAGUUGGGAC...CUU.......GU
+gi|507148463:1-115              ACGGCCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGCUCC..gCAG.......GG
+gi|451991607:1-116              ACGGAAGUUAA.G.CUCUCUAGCG..CCGAU.G.GUAGUUGGGAC...CUU.......GU
+gb|EU723616.1|:258-373          ACAGAAGUUAA.G.UCCUUCAGCG..CCGAU.G.GUACUUGGGUG..gCAA.......CG
+gi|452192408:1-113              ACGGACGUGAA.G.ACCUCCAGCG..CCGAG.A.AUACUGGGAGG..gCAG.......CC
+gb|K03158.1|BACRBB:21-137       ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUAGUCGGGGG...UUU.......CC
+gi|507148585:1-114              CCAGAAGUUAA.G.CCCCCGAGCG..CCGAU.G.GUACUGCGGAG...UAA.......GU
+gi|45565:1-116                  ACGGCAGUUAA.G.CUCUUUUGCG..CCGAU.G.GUAGUUGGGGG...UUU.......CC
+gi|485099272:1-113              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUAGUCGGACU...-AA.......CG
+gi|451991666:1-115              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUAGUUGGAUU...-UA.......CG
+gi|451991767:1-113              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUAGUCGGACU...-GA.......CG
+gi|662019936:1-111              ACAGAAGUUAA.G.CUCCUUAGCG..CCGAU.G.GUAGUCGGACU...-AA.......CG
+gi|452192147:3-120              CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCACUG..gGAA.......CG
+gi|452192127:2-120              CCGGAAGCUAA.G.GCCCACAGCG..CCGAU.G.GUACUGCAACC..gGGA.......GG
+gb|K02682.1|MLURRAA:1-119       CCGGAAGCUAA.G.CCCCAUAGCG..CCGAU.G.GUACUGCAACC..gGGA.......GG
+gb|GU137314.1|:62-180           ACGAUGGUUAA.G.ACCUAAUCGG..CCGAU.A.AUACUACGUUG..gAGA.......CG
+gi|451991676:1-116              ACAGAAGUUAA.G.CCUCUUAACG..CCGAU.G.GUACUACGAUG..gAAA.......CG
+gi|952974062:1784173-1784288    ACGGAAGUUAA.G.CCCUCCAAGG..CCGAU.G.AUACUGCUGCC..gAGA.......GG
+gi|451991788:3-118              AGGGUCGUGAA.A.CGAAGUCGCG..CCGAU.G.AUAGUGUGUUU...---.......UC
+gi|451991797:1-113              UCGGAAGUGAA.A.CUGCUCAGCG..CCGAU.G.AUAGUGUGGGG...-UU.......AC
+gi|451991785:1-108              AGAGUAGUUAA.G.CCCUGGAGAG..CCGAU.G.GUACUGCUU--...---u....a.--
+gi|451992028:1-106              AGAGCAGUUAA.G.CCCUGGAGAG..CCGAU.G.GUACUGCG---...UAA.......--
+gi|451991909:1-107              AGAGUAGUUAA.G.CCCUGGAGAG..CCGAU.G.GUACUGCU---...---u...ca.--
+gi|451992024:1-105              AGAGUCGUUAA.G.CCCUGGAGAG..CCGAU.G.GUACUGCU---...UA-.......--
+gb|M33892.1|CHBRRAA:1-109       AGAGUCGUUAA.G.CCCUGGAGAG..CCGAU.G.GUACUGCU---...---uc..ac.--
+gi|451991809:1-115              UCGGCCGUGAA.A.GAGCCCUGCG..CCAAU.G.GUACUGCGUCU...-UA.......AG
+gi|452192556:4-121              UCGGCCGUGAA.A.CUGUUCAGCG..CCAAU.G.GUACUGCGUCU...-UA.......AG
+gi|46403:3-120                  UCGGCCGUGAA.A.GAGCCCUGCG..CCAAU.G.GUACUGCGUCU...-UA.......AG
+gi|452192293:1-108              UCGACCGUGAA.A.CGUUCCUGCG..CCGAU.G.GUACUACA---...---.....c.--
+gb|CP000143.2|:5111-5227        UCGGCAGUUAA.G.UGCCGUCGCG..CCAAU.G.GUACUGCGUCU...-CA.......AG
+gi|507148457:2-118              UCGGCCGUUAA.GgGCCAAC-ACG..CCGAU.G.GUACUGCGUCU...-CA.......AG
+gi|451991898:1-117              UCGGCAGUGAA.A.CCGCUCAGCG..CCGAU.G.GUAGUGCGACC..aCGC.......UG
+gb|CP011310.1|:c2714779-2714663 UCGGCCGUGAA.A.CCAGGUAGCG..CCGAU.G.GUACUAGUGCC...-UA.......AG
+gb|M35563.1|THTRR5SX:4-120      UCAGAAGUGAA.A.CGGUGCAUCG..CCGAU.G.GUAGUGUGGGG...CCU.......CC
+gi|452192131:1-110              AGAGCAGUUAA.A.CCUUUUAGCG..CAGAU.G.GUACUACGG--...UCA.......--
+gi|452192334:1-106              AGAGAAGUUAA.G.CCUGCAUGCG..CCGAU.G.GUACUGCU---...-AA.......--
+gi|452192400:1-109              AGAGCAGUUAA.G.CCCCUCAGCG..CCGAU.G.GUACUACG---...-AA.......--
+gb|M33890.1|SPGRRAA:3-121       CCGGAAGCUAA.G.CCUGCUAACG..CUGAU.G.GUACUGCAACC..gGGA.......GG
+gi|452192304:1-110              AGAGAAGUUAA.G.CCCACCAGCG..CUGAU.G.GUACUGCCGUA...---.......AA
+gi|507148572:1-110              AGAGCCGUUAA.G.CCCUAUUGCG..CCGAU.G.GUACUGCGCU-...---.......AU
+gi|452192451:1-109              AGAGAAGUUAA.G.CCCGCCAGCG..UCGAU.G.GUACUGCA---...UUU.......--
+gi|452192466:1-110              AGAGAAGUUAA.G.CCCGCCAGAG..CCGAU.G.GUACUGCCGUA...---.......AC
+gb|M33889.1|FBCRRAA:1-115       ACGGCCGUUAA.G.CCCUCCAGCG..CCGAU.G.GUACUUGCCCC..gCAG.......GG
+gi|451991928:1-106              AGAGAAGUUAA.G.CCCGCCUGCG..CAGAU.G.GUACUGCAG--...-UU.......--
+gi|507148549:1-108              AGAGAAGUUAA.G.CCCAACUGCG..CCAAU.G.GUACUGCAGUC...---.......AA
+gi|452192142:4-112              AGAGAAGUUAA.G.CCCACCAGAG..CCGAU.G.GUACUGCGGUA...---.......AC
+gi|452192345:1-110              AGGGAAGUUAA.G.CUCAUCUGCG..CCGAU.G.GUACUGCCA--...CUA.......--
+gi|452192241:1-112              AGGACCGUGAA.A.CGACUUCGCG..CCGAU.G.AUAGUGCUGCA...---.......AC
+gi|451991789:2-116              CUGGAAGUUAA.G.CCUUCUAGCG..CUGAU.G.GUACUUUGUCU...-UA.......AG
+gi|452192282:1-118              CCGGCAGUUAA.G.CCCUCCAGCG..CCGAU.G.AUACUGUGCCGgacGCA.......CG
+gi|452192181:1-114              ACAGAAGUGAA.A.CGCCGCAUCG..CCGAU.G.AUAGUGUGGGG...UCU.......CC
+gi|452192237:1-113              AGGGCCGUGAA.A.CAGUUCAGCG..CCGAU.G.AUAGUGCGCAU...---.......UC
+gi|452192238:1-113              UCGGCCGUUAA.A.CUCCUCAGCG..CCGAU.G.GUACUAUGUCU...-UA.......AG
+gb|M11540.1|TFERRATTH:2-116     AGGACGGUGAA.A.CGCUCCCGCG..CCAAU.G.AUAGUAGGCAC...--C.......UC
+gi|451991865:1-113              AGAGAAGUGAA.A.CGAAGCAGCG..CCGAU.G.AUAGUAUGUUU...---.......UC
+gi|451991635:3-116              AGAGAAGUGAA.A.CGAAGCAGCG..CCGAU.G.AUAGUGUGUUU...---.......CC
+gi|452192354:1-113              AGAACUGUGAA.A.CGAAGCUGCG..CCGAU.G.AUAGUGUGUAU...---.......UC
+gi|452192128:1-113              UCGGAAGUUAA.G.ACCUCCAGCG..CCGAU.G.AUACUGCCAGU...-CC.......AC
+gi|452192311:1-117              ACGGAAGUUAA.G.CUCUUCAGCG..CCGAU.G.GUACUGCAUGG..gAGA.......CU
+gi|662019911:1-115              ACAGAAGUUAA.G.CUCUGUUGCG..CCGAU.G.AUACUGCAUGG..gCAA.......CU
+gi|451991895:1-113              UCGGAAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCGGGG...-UA.......GC
+gi|507148536:1-110              UCGGAAGUUAA.G.CUCUCCAUCG..CCGAU.G.AUACUGCUAGG...-UA.......GC
+gb|CP006585.1|:1257726-1257839  ACGGUAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCAUGG...-UU.......GU
+gi|452192450:1-113              UCGGCAGUUAA.G.ACCACCCUCG..CCGAU.G.AUACUUGGAGU...-CC.......AC
+gi|662019945:1-111              ACGGUAGUUAA.G.CCCUCCAUCG..CCGAU.G.AUACUGCAUGG...-UU.......GU
+gi|34483186:c333378-333264      CUGGCAGUUAA.G.CUCUCCAUCG..CCGAU.A.AUACUGCAUCU...UUC.......AG
+gb|JX424617.1|:c548-437         AGAGAAGUUAA.G.CCCACUUACG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|452192268:1-115              ACGGAAGUUAA.G.CCUCAGAUCG..CCGAU.G.GUACCUGGCCC...-UC.......GG
+gb|GU452708.1|:93-211           ACGACGGUUAA.G.ACCAGGGCGG..CCGAA.A.GUACUAUGCUG..gAGA.......CG
+gi|451991800:1-101              AGAGAAGUUAA.G.CCUCGUCACG..CCGAU.G.GUACUGCG---...UAA.......--
+gi|451991799:1-102              AGAGAAGUUAA.G.CCUUGUCACG..CCGAU.G.GUACUGCG---...---uc..ac.--
+gi|452192505:1-102              AGAGAAGUUAA.G.CCUUGUCACG..CCGAU.G.GUACUGCAU--...---.......AA
+gi|451991558:1-113              UCAGAAGUUAA.G.CCUCUGAUCG..CUGAU.G.GUACUAUACAC...-AA.......GA
+gi|451991754:2-119              UCGGCCGUGAA.A.CGUUCCAGCG..CUGAU.G.GUACUUUGCCU...-UA.......AG
+gb|CP003398.1|:259645-259761    UCGAACGUGAA.A.CCUCAUAGCG..CUAAU.G.GUACUAUGUCA...-UA.......AG
+gi|452192506:2-119              CUGGAAGUUAA.G.CCUUCUAGCG..CUUAU.G.GUACUUUGUCU...-UA.......AG
+gi|507148510:1-115              UCAGAAGUGAA.A.CGCCGUAAUG..CCGAU.G.GUAGUGUGGGA...UGU.......UC
+gi|45880:2-118                  UCAGAAGUGAA.A.CGCUGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gb|M16533.1|VIBRRABA:2-118      UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|662019975:1-113              UCAGAAGUGAA.A.CGCGGUAGCG..CCGAU.G.GUAGUGUGGCA...-UU.......CG
+gi|38869:2-118                  UCAGAAGUGAA.A.CGCGGUAGCG..CCGAU.G.GUAGUGUGGCA...-UU.......UG
+gi|451991756:2-118              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991660:2-118              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|675820153:120-237            UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|507148512:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|507148513:1-115              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...CUU.......CC
+gi|485099266:1-116              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991968:1-116              UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991600:3-115              AGGACCGUGAA.A.CGCCUUAGCG..CCGAU.G.AUAGUGUGGCA...-UU.......CG
+gi|451991949:1-114              UCGGCCGUGAA.A.CGCUCCAGCG..CCAAU.G.GUACUUUGUCU...-UA.......AG
+gi|451991930:1-114              UCGGCCGUGAA.A.AUCCCCAGCG..CCCAU.G.GUACUGUGCCU...-CA.......AG
+gb|M11546.1|TFERRATA:3-119      UCGGCCGUGAA.A.ACCCCCAGCG..CCCAU.G.GUACUGUGCCU...-CA.......AG
+gi|451991638:1-115              AGGACAGUGAA.A.CGCCUUCGCG..CCGAU.G.AUAGUUGGUUU...---.......AC
+gi|451991657:1-115              AGGACAGUGAA.A.CGCCUUCGCG..CCGAU.G.AUAGUGGACUU...--C.......CC
+gi|526641878:3-117              AGGACCGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGUGGUU...--C.......UU
+gi|389606634:c119374-119258     AGGACCGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGUGGUU...--C.......UU
+gi|507148557:1-109              AGGACCGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGUGGUU...--C.......UC
+gi|662019915:1-113              AGGACCGUGAA.A.CGACUCAGCG..CCGAU.G.AUAGUGUGGUU...--C.......UU
+gi|507148579:1-112              UCAGAAGUGAA.A.CGUCUUAGCG..CCGAU.G.GUAGUGUGGUU...--C.......GC
+gb|CP007577.1|:3302973-3303092  UCAGAAGUGAA.A.CCUCUUAGCG..CUGAU.G.GUAGUGUGGGA...-UU.......AC
+gi|452192503:1-116              UCAGAAGUGAA.A.CCUCUUCGCG..CUGAU.G.GUAGUGUGGCG...-UU.......AG
+gb|M76577.1|GLURR5SA:3-120      UCGGCCGUGAA.A.UCCCUCAGCG..CCUAU.G.AUACCGUACCU...-UA.......AG
+gb|M76569.1|ABCRR5SA:3-119      UCGGCCGUGAA.A.ACCCCCAGCG..CCUAU.G.AUACGUUGGCU...-UA.......AG
+gb|S39188.1|:2-119              UCGGCCGUCAA.A.CGCUCCAGCG..CCAAU.G.GUACUAUGUCU...-CA.......AG
+gi|452192385:1-116              UCGGAAGUGAA.A.CCGCUUAGCG..CCGAU.G.AUAGUGUGGCA...GGU.......UG
+gb|M34761.1|MAGRRAC:1-117       UCGGAAGUGAA.A.CCGCUUUGCG..CCGAU.G.AUAGUGUGGCA...GUU.......UG
+gi|451991619:1-116              UCGGAAGUGAA.A.CCGCUUAGCG..CCGAU.G.AUAGUGCAGAA...--U.......AC
+gb|M34762.1|MLCRRAB:1-117       UCGGAAGUGAA.A.CCGCUUAGUG..CCGAU.G.AUAGUGUGGCA...AUU.......UG
+gi|485099285:1-114              ACGGCCGUGAA.A.CGCCCCUGCG..CCCAU.G.GUACUUCGUCU...-UA.......AG
+gb|CP013949.1|:1046709-1046826  UCGGCCGUUAA.A.CUCUUCAGCG..CCAAU.G.GUACUAUGGCU...-UA.......AG
+gi|451991914:2-119              ACGGCCGUGAA.A.CGCCCCUGCG..CCAAU.G.GUACUUCGUCU...-UA.......AG
+gi|451991913:2-119              ACGGCCGUGAA.A.CGCCCCUGCG..CCCAU.G.GUACUUCGUCU...-UA.......AG
+gi|451991605:2-118              UCAGCAGUGAA.A.CGAUGUAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gb|DQ532441.1|:c9325-9209       UCAGCAGUGAA.A.CGAUGUAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|451991936:1-114              UCAGUAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gb|ANOR01000024.1|:5607-5723    UCAGAAGUGAA.A.CGAUGCAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gi|4468164:2-115                AGGACAGUGAA.A.CGAAUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|48257:4-119                  ACGGAAGUGAA.A.CGCGCCAGCG..CCGAU.G.GUACUGGCGGA...-CG.......AC
+gi|224510780:2-119              ACGGAAGUGAA.A.CGCGCCAGCG..CCGAU.G.GUACUGGGCGG..gCGA.......CC
+gi|451991880:1-115              UCGGCCGUUAA.G.UGCCGUAGCG..CCAAU.G.GUACUGCGUCA...-AA.......AG
+gi|662019950:1-114              UCGGCAGUUAA.G.CGCCGUCGCG..CCAAU.G.GUACUGCGUCC...-UA.......AG
+gb|CP009574.1|:c806523-806408   UCAGAAGUGAA.A.CGGACUCACG..CCGAU.G.AUAGUCUGGCA...-UU.......GC
+gb|M33886.1|CYTRRAB:1-116       ACGGAAGUUAA.G.UUCUCUAGCG..CCGAU.G.GUAGUGUGGAC...UUU.......GU
+gi|357428060:1522-1640          UCGGCCGUGAA.A.AGCCUCCGCG..CCAAU.G.GUACUGCGUCU...-UA.......AG
+gi|356882082:c402625-402507     UCGGCCGUGAA.A.CGCCUCAGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gb|CP012406.1|:664991-665109    UCGGCCGUGAA.A.AGCCUCUGCG..CCGAU.G.GUACUGCGUCU...-UA.......AG
+gi|451991726:1-113              ACGGCCGUUAA.G.CCCUCCAGGG..CCGAU.G.AUACUGCAACU..gCAA.......GG
+gi|452192559:1-115              UCGGCCGUCAA.A.CGCUUCUGCG..CCAAU.G.GUACUAUGUCU...-CA.......AG
+gb|M35166.1|PLLS5RRNAB:1-109    ACAGCAGUUAA.G.CACAAC-CAG..CCGAU.G.AUAGUGC----...---ccacca.--
+gb|CP011270.1|:4958369-4958477  ACGACCGUUAA.G.CCUCUG-GAG..CCGAU.G.AUAGUGCCG--...AA-.......--
+gb|M35170.1|GEM5SRRNA:1-108     ACGGCCGUGAA.A.-GUUUGAGG-..CCGAU.G.GUAGUGC----...---gu.cca.--
+gi|452192403:1-110              AGAGAAGUUAA.G.CCCCGCUCCG..CCGAU.G.AUACUGAGAUA...---.......AA
+gi|452192413:1-112              AGAGAAGUUAA.G.CCCUGCAGCG..CCGAU.G.GUACUGGGGUU...---.......AC
+gb|M34775.1|ANCRRAA:1-116       UCGGCCGUUAA.A.CUCCUCAGCG..CCGAU.G.GUACUAUGUCU...-CA.......AG
+gb|M35569.1|LTTRR5S:3-117       AGGACAGUGAA.A.CGCCUCAGCG..CCGAU.G.AUAGUGCGCAU...---.......UC
+gi|452192547:1-114              UCGGCCGUGAA.A.CGCCCCUGCG..CCGAU.G.GUACUUCGUCU...-UA.......AG
+gi|40413:3-117                  UCGGUCGUUAA.G.UCCCCCUGGG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gb|M35310.1|HESRRA:1-117        ACGGAAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUCCGCGG..gGAA.......CC
+gb|M35568.1|VITRR5SXX:1-115     AGGACAGUGAA.A.CGCCUUAGCG..CCGAU.G.AUAGUGCGGUU...--C.......UC
+gi|451991653:1-112              UCGGAAGUUAA.G.CUUCUUGGAG..CCGAU.G.GUACUGCCAGG..gCAA.......CC
+gi|861061:1-118                 UCGGUCGUUAA.G.ACUUCCAGCG..CCGAU.G.GUACUGCAGGG..gCGA.......CC
+gi|860904:1-116                 ACGGAAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUCCGCGG..gAAA.......CC
+gi|507148422:2-119              ACGGAAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUCCGCGG..gAAA.......CC
+gi|451991792:1-116              ACGGAAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUUCGCGG..gAAA.......CC
+gi|452192399:1-117              ACGGAAGUUAA.G.CCCUCCAGAG..CCGAU.G.GUACUUCGCGG..gAAA.......CC
+gi|451991925:1-116              UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|47140:2-118                  UCAGAAGUGAA.A.CGCAAUCGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|451991802:1-112              ACAGAAGUUAA.G.CCCUGUUGCG..CCGAU.G.AUACUGCAUGG..gCAA.......CU
+gi|451992042:1-115              ACGGAAGCUAA.G.CCCUCCAGCG..CCGAU.G.GUACUGCCCUG..gCAA.......CG
+gi|452192373:1-117              CCGGAAGCUAA.G.CCCUUCAGCG..CCGAU.G.GUACUGCACUC..gCCA.......GG
+gi|451991686:3-118              UCGGCCGUUAA.A.CUCCUCUGCG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gi|328801247:21-136             UCAGUAGUGAA.A.CGAUGUAUCG..CCGAU.G.GUAGUGUGGGG...UUU.......CC
+gb|KF901086.1|:6138-6252        ACGGAAGUGAA.A.CGCACCAGCG..CCGAC.G.AUACUGCCCUG..gCGA.......CG
+gi|688725010:c1243-1130         AGGACAGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gb|AC167666.4|:1429-1542        AGGACAGUGAA.A.CGACUCUGCG..CCGAU.G.AUAGUGCGGAU...---.......UC
+gi|690018164:461-574            AGGACAGUGAA.A.CGCCUUCGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|451991889:1-113              AGGACAGUGAA.A.CGACUUUGCG..CCGAU.G.AUAGUGCGGGU...---.......UC
+gi|688799711:426-535            CCAGAAGUUAA.G.CCCCCGAGCG..CCGAU.G.GUACUGCGGAG...-UA.......GU
+gi|307683286:c91863-91747       UUGGUGGUUAA.A.CUCUACUGCG..GUGAC.G.AUACUGUAGGG..gAAG.......CC
+gi|452192203:1-116              ACGGACGUUAA.G.CCCGCCUGCGuuUCGGC.GaGUACUGGAGUGc.gCGA.......GC
+gi|765338145:1-113              AGGACCGUGAA.A.CGAGACCGCG..CCAAU.G.AUAGUGCACAC...---.......UC
+gb|CP006885.2|:13738-13857      ACGGAAGAUAA.G.CCCACCAGCGuuCCGGG.GaGUACUGGAGUGc.gCGA.......GC
+gi|689936939:3579-3693          CCGGUCGUUAA.G.CCUUCCAACG..CUGAU.G.GUACUGCACGA..gGGA.......UC
+gi|841942794:7818-7933          UCAGAAGUGAA.A.CGCCGUAGCG..CCGAU.G.GUAGUGUGGGG...UCU.......CC
+gi|156148669:c114797-114685     ACGGCCGUGAA.A.CGCCCCAGCG..CCAAU.G.GUACUUCGUCU...-CA.......AG
+gi|687058084:c326-216           AGAGAAGUUAA.G.CCCGCCUGCG..CCGAU.G.GUACUGCAAUG...---.......CA
+gi|687836183:c2166-2052         UCGGAAGUGAA.A.CGCAGCUGCG..CCGAU.G.GUAGUGUGGCU...-CA.......AG
+gi|49258838:3-122               ACGGAAGAUAA.G.CCCACCAGCGuuCCGGG.GaGUACUGGAGUGc.gCGA.......GC
+gi|20609:4653-4769              UCGAUUGUUAA.A.CACUACAGCG..GCAAU.G.AUACUGAAGGG..gAAG.......CC
+gi|451991654:1-118              ACGGAAGAUAA.G.CCCGCCUGCGuuCCGGUcA.GUACUGGAGUGc.gCGA.......GC
+gb|CP007060.1|:196416-196534    ACGGAAGAUAA.G.CCCGCCUGCGuuCCGAUcA.GUACUGGAGUGc.gCGA.......GC
+gi|37927900:1-119               ACGGAAGAUAA.G.CCCACCAGCGuuCCGGG.GaGUACUGGAGUGc.gCGA.......GC
+gi|526641914:1-118              ACGGAAGAUAA.G.CCCACCUGCGuuCCGGC.GaGUACUGGAGUGc.gCGA.......GC
+                                      *   *                        **                       
+
+AB001721.1/2735-2851            GCAUGGGAGAGUAGG.ACGUUGCCGGGU
+gb|CP006694.1|:152734-152851    GCAUGGGAGAGUAGG.ACGUUGCCGGGU
+gi|526641887:1-118              CAAUGGGAGAGUAGG.ACGUUGCCGGGU
+gi|216762:421-538               CAAUGGGAGAGUAGG.ACAUUGCCGGGU
+gi|452192414:1-117              GCCCGGGAGAGUAGG.ACGCGCACAGGU
+gi|216767:249-367               CUGUGGGAGAGCAGG.ACGGUGCCACAC
+gi|507148580:1-114              CCGUGGGAGAGUAGG.UAGCCGCCGGGC
+gi|452192347:1-113              CCGUGGGAGAGUAGG.UAGCCGCCGGGC
+gi|451991762:1-111              UCGCGGGAGAGUAAG.CUAUUGCCAGG-
+gi|452192371:1-112              UCGCGGGAGAGUAGG.UCGCCGCCGGGC
+gi|452192196:1-116              CGGUGGGAAAGUAGG.UCGUUGCCAGGC
+gi|452192221:1-115              UUACGGGAGAGUAGA.ACGUUGCCGGGU
+gi|507148498:1-116              UUACGGGAGAGUAGA.ACGUUGCCGGGU
+gi|507148564:1-107              UCGCGGGAGAGUAGG.UUAUUGCC----
+gb|KU291355.1|:36-147           UCGCGGGAGAGUAAG.UUGUUGCCAGG-
+gb|CP002873.1|:2145056-2145173  UUACGGGAGAGUAGA.ACGUUGCCGGGU
+gb|CP006647.2|:c434557-434446   UCGCGGGAGAGUAAG.UCAUUGCCAGG-
+gi|507148596:1-116              UGGUGGGAGAGUAGG.UCGUCGCCAGGC
+gi|451992005:1-111              UCGCGGGAGAGUAAG.UUAUUGCCAGG-
+gb|CP004267.1|:c439103-438992   UCGCGGGAGAGUAAG.UUAUUGCCAGG-
+gb|CP007564.1|:466414-466525    UCGCGGGAGAGUAAG.UUAUUGCCAGG-
+gi|452192501:1-108              UCGCGGGAGAGUAAG.UUAUUGCCA---
+gi|452192103:1-116              UUACGGGAGAGUAGA.ACGUUGCCGGGU
+gi|451991616:1-110              AAGUGGGAAAGUAGG.AUGCUGCCUG--
+gb|CP005745.1|:c431115-431004   UCGCGGGAGAGUAGG.UCAUUGCCAGG-
+gb|CP005829.1|:c428563-428452   UUGCGGGAGAGUAGG.UUAUUGCCAGG-
+gb|CP000049.1|:c435752-435641   UCGCGGGAGAGUAGG.UUAUUGCCAGGG
+gb|CP005851.1|:481735-481846    UCGCGGGAGAGUAGG.UUGUUGCCAGG-
+gi|526641892:1-111              UCGCGGGAGAGUAGG.UUAUUGCCAGG-
+gi|4468110:2-116                CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gb|CP015136.1|:656498-656615    CUGUGGGAGAGUAGG.UCACUGCCGGGG
+gb|CP013099.1|:3650031-3650144  CCAUGUGAAAGUAGG.ACACUGCCAG--
+gb|CP013066.1|:1198376-1198490  GGCUGCAAGAGUAGG.UCGGUGCCAG--
+gb|CP011214.1|:386649-386764    GGUCGCGAAAAUAAG.UCGUCGCCAA--
+gi|38938:2-120                  GUGUGGGAGAGUAGG.UCACCGCCGGAC
+gb|CP009217.2|:1265876-1265989  AUGUGGGAGAGUAAG.UCGUUGCCAG--
+gb|CP012154.1|:245759-245875    CCGUGUGAGAGUAGG.UCACUGCCAGGC
+gb|CP003801.1|:c1381757-1381640 GCUUGGGAGAGUAGG.ACGCCGCCUAUU
+gi|662020025:1-116              CCAUGCGAGAGUAGG.ACACUGCCAGGC
+gb|CP011213.1|:c135211-135096   UUCCGGGAAAGUAGG.UAGGCGCCAA--
+gb|CP007706.1|:54289-54406      ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|610510261:c2632714-2632599   GCGUGGGAGAGUAGG.UCGUUGCCGGGC
+gb|KT962112.1|:5558-5674        ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|743966687:c3299323-3299206   ACUUGGGAGAGUAGG.UCGUCGCCAGGC
+gb|M59337.1|STMCRETO5S:2-119    CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|507148501:1-116              UCCCGGGAGAGUAGG.ACGUAGCCAAUU
+gi|662019993:1-109              AAGUGGGAGAGUAGG.UCGCUGCCAA--
+gi|662020001:2-112              CGGCGGGAGAGUCGG.UCGCCGCCA---
+gi|374855595:178928-179047      GCCCGCAAGAGUAGG.UCGCCGCCUGGG
+gi|662019999:2-119              GCACGGGAAAGUCGG.UCGCCGCCAGGU
+gb|CP006911.1|:c1523003-1522887 CCAUGUGAGAGUAGG.ACAUUGCUAGGC
+gi|662019963:1-115              ACGCGGGAGAGUAGG.UCGUCGCCAGGU
+gi|662019989:1-117              GUGUGGGAGAGUAGG.ACGCCGCCGGCA
+gb|KC811143.1|:23595-23712      CCCUGGGAGAGUAGG.ACACUGCCGACU
+gb|CP012645.1|:c7075-6965       ACGCGGGAGAGUAGG.UAGCCGCCA---
+gi|451991747:2-119              CCCUGGGAGAGUAGG.UCGCUGCCAGGC
+gb|CP005990.1|:c1738617-1738502 UGGUGCGAAAGUAGG.UCAUCGCCAG--
+gi|485099290:1-116              GUGUGGGAGAGUAGG.AAAUUGCCAGGU
+gi|662019941:c114-4             CCAUGUGAAAGUAGG.GAACUGCCA---
+gi|452192398:1-115              CCCUGGGAGAGUAGG.UCGGUGCCCG--
+gb|CP011770.1|:130936-131052    CGUUGGAAGAGUAGG.ACGCCGCCAGGC
+gi|485099250:2-115              ACGCGGAAGAGUCGG.UCGUUGCCAG--
+gb|CP006745.1|:122093-122210    GCGUGGGAGAGUAGG.UCACUGCCAGGU
+gi|662019982:1-114              GCGUGGGAGAGUAGG.UCACUGCCAGGU
+gb|CP006567.1|:9138975-9139093  CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|507148531:1-114              ACGUGGGAGAGUAAG.UCACUGCCAGAC
+gb|JQ733906.1|:5882-5999        GCAUGCGAGAGUAGG.UCAUUGCCAACC
+gb|CP003347.1|:1410592-1410706  GGGUGGAAAAGUAGG.ACACCGCCGAAC
+gi|452192107:1-117              GUGUGGGAGAGUAGG.UCGCCGCCGGGA
+gi|662020015:2-117              CCAUGUGAAAGUAGG.ACACCGCCAGAC
+gi|39130:3-120                  ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|451991572:2-119              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|258590833:c1582130-1582011   GCGCGGGAGAGUAGG.UCGCCGCCAGGA
+gi|452192338:1-117              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|507148517:1-115              CCAUGUGAGAGUAAG.UCAUCGCCAGCU
+gi|452192484:1-114              GUGCGGGAGAGUAGG.UAGCUGCCAG--
+gi|451991869:1-115              ACGUGGGAAAGUAGG.ACACCGCCGGAA
+gb|CP003308.1|:286401-286517    GCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gi|662020024:1-117              GUGUGGGAGAGUAGG.ACACCGCCGUCA
+gi|452192100:1-114              CCAUGCGAAAGUAGG.UCACUGCCAGGC
+gi|452192227:1-113              CCAUGUGAGAGUAGG.UCAUCGUCAGGC
+gi|452192370:1-117              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192339:1-117              GUGUGGGAGAUUAGG.UGAUCGCCGGCA
+gi|452192326:1-113              CCCUGGGAAAAUCGG.ACGGUGCCUG--
+gb|GU474916.1|:6228-6347        GCGUGGGAGAGUAGG.UCGUCGCCGGGA
+gi|38747:1-116                  CCAUGUGAGAGUAAG.UCAUCGCCAGCU
+gb|CP003639.1|:c3378511-3378397 CCCUGGGAAAGUAGG.UCAUCGCCAG--
+gi|485099292:1-111              GUGUGGGAAAGUAGG.UCGGUGCCA---
+gi|452192337:1-117              GUGUGGGAGAUUAGG.UGGUCGCCGGCA
+gi|452192239:1-115              GCCUGGGAGAGUAGG.UCGUUGCCGGAU
+gi|330752658:19019-19129        AGGUGGGAGAGUAGG.UCGUUGCCA---
+gi|452192169:2-119              GCGCGGGAGAGUAGG.UCGUCGCCUGGU
+gi|452192109:1-111              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gb|CP009848.1|:137372-137488    CCAUGUGAGAGUAGG.ACAUCGCCAGGC
+gi|452192272:1-117              GCACGGGAAAGUAGG.UGGCUGCCGGAU
+gi|451991708:2-119              GUGCGGGAGAGUAGG.ACGCUGCCAGGG
+gi|451991840:1-117              GUGUGGGAGAGUAGG.UCGUCGCCGACA
+gb|CP010552.1|:c648422-648306   CCAUGUGAGAGUAGG.ACAUUGCUAGGC
+gb|EU081774.1|:5115-5231        CCCUGUGAGAGUAGG.ACGCCGCCAAGC
+gb|CP003667.1|:1525308-1525419  AUGCGGGAGAGUAGG.UAGCUGCCU---
+gi|452192132:1-116              CCGUGCGAGAGUAGG.U-AGCGCCCAGG
+gi|662019923:1-112              CCAUGUGAAAGUAGG.UCACCGCCAGGC
+gi|452192391:2-120              GUGCGGGAGAGUAGG.ACACCGCCGGA-
+gi|757807349:c1774843-1774728   GUGUGGGAGAGUAGC.ACGUCGCCGC--
+gi|507148552:1-110              -UCCGGGAGAGUAAG.UCGCCGCCCUUU
+gi|452192288:1-115              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gb|CP003418.1|:799889-800004    GGGUGGGAGAGUAGG.UCGCUGCCAA--
+gb|CP012075.1|:1345279-1345392  AUGCGGGAGAGUAGG.UGGCCGCCUCCU
+gi|451991950:1-115              CCCUGUGAGAGUAGG.ACGUCGCCAAGC
+gb|M34776.1|PSERRAA:1-117       ACCUGGGAGAGUAGG.UCGUCGCCAGGC
+gb|M34771.1|MTBRRAB:1-117       ACACGGGAGAGUCGG.UCGCCGCCAGGC
+gb|CP000655.1|:41847-41961      CCGUGUGAAAGUAGG.UAACUGCCGGGC
+gi|330752781:c15609-15499       -CGUGGGAGAGUAGG.UCGCCGCCUUUU
+gi|42763:130-247                CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|451991719:1-113              CCGUGUGAAAGUAGG.ACACCGCCAGAC
+gi|452192242:1-115              GGGUGGGAGAGUAGG.UCGCUGCCA---
+gi|451991725:1-107              -CGCGGGAAAGUAGG.UCAUUGCCGG--
+gb|CP007490.1|:520317-520434    UUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192089:1-113              GGGUGGGAGAGUAGG.UCAUCGCCA---
+gi|48430:2-118                  CCAUGUGAGAGUAGG.ACAUCGCCAGGC
+gi|212548595:c196594-196482     UUGCGGGAGAGUAAG.UAGCUGCCAUUU
+gi|452192382:1-113              GCCUGGGAGAGUAGG.UCGCUGCCGAGA
+gi|451991901:1-112              CCCUGUGAGAGUAGG.ACGCCGCC----
+gi|330752731:13671-13782        -CGUGGGAGAGUAGG.UCGCCGCCUUGU
+gi|507148619:1-115              CCACGGGAAAGUCGG.UCGCCGCCAGGU
+gi|452192257:1-111              CCAUGUGAAAGUAGG.UCACUGCCA---
+gi|451991980:1-114              CCCCGGGAGAGUAGG.ACGCCGCCGGAG
+gi|451991975:1-115              GCCUGGGAGAGUAGG.UCGCUGCGAU--
+gb|CP002514.1|:107806-107924    GCGUGGGAAAGUAGA.UAGCUGCCGGAA
+gi|452192342:1-116              GCGUGGGAAAGUAGA.UAGCUGCCGGAA
+gi|507148613:1-117              GUGUGGAAGAGUAGG.UCGCCGCCAUCG
+gi|507148504:1-113              GUGUGAGAGAGUAGC.ACGAUGCCA---
+gi|452192256:1-117              UUGUGGGAGAGUAGG.UCGCCGCCGGAU
+gi|507148584:1-115              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|972621738:1141564-1141681    GCCUGGGAGAGUAGG.UCGGUGCCCGGG
+gi|452192217:1-116              UGGUGGGAGAGUAGG.UCGCCGCCGAAU
+gi|166157033:35720-35832        UUCUGGGAAGAUAGG.UCGUCGCCGG--
+gi|662019965:1-110              GUUUGGGAAGAUAGG.UCGUCGCCG---
+gb|CP010904.1|:590328-590444    CCUCGGGAGAGUAGC.ACGUUGCCGGGC
+gi|452192430:1-115              CCAUGCAAGAGUAGG.UCAUCGCCAGGG
+gb|CP006375.1|:c1605-1492       ACGCGGGAAAGUCGG.UCGCUGCCAG--
+gi|507148481:2-116              CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|965596756:c1423416-1423301   UGGUGGGAAAGUAGG.GCGGUGCCAG--
+gb|GU568020.1|:c16851-16734     UGGUGGGAGAGUACG.UCGCUGCCGACU
+gi|452192515:1-109              UUGUGGGAGAGUAUG.UCGCCGCCUUCU
+gi|674649611:c46346-46231       CCCUGCGAGAGUAGA.ACGUCGCUAGGC
+gi|662019976:1-109              -AGUGGGAGAGUAGG.UAGCCGCCAC--
+gi|452192233:1-115              CGGUGUGAGAGUAGG.UUAUCGCCAGUA
+gi|662019912:1-116              CCAUGUGAGAGUAGG.UCAUCGCCAGGC
+gi|485099214:1-112              ACCCGGGAGAGUAGG.UCGCCGCCCGCU
+gi|485099267:1-114              GCACGGGAGAGUAAG.UCGCUGCCAGGU
+gi|451991879:1-116              CCAUGUGAGAGUAGG.ACAUUGCUAGGU
+gi|91199943:841289-841402       AGCUGGGAGAGUAAG.UUACUGCCGGGA
+gi|452192246:1-117              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|485099234:1-115              UCCCGGGAGAGUAGG.ACGUUGCCAG--
+gi|452192344:1-109              -AGCGGGAGAGUAGG.UAGCCGCCGUU-
+gi|451992014:1-117              UCCUGGGAGAGUAGG.UCUUCGCCGGGC
+gi|295083795:983988-984097      CAGUGGAAGAGUAGG.UCGCUGCCAU--
+gi|662019926:1-114              CCGUGGAAGAGUAGG.UCGUUGCCAGGA
+gi|452192269:1-114              CCAUGUGAAAGUAGG.UCAUCGUCAGAC
+gi|485099271:1-111              -UCCGGGAGAGUAAG.UCGCCGCCCUUU
+gi|452192113:3-116              -UCCGGGAGAGUAAG.UCGCCGCCCUUU
+gi|451991849:3-118              AUGCGGGAGAGUAGG.UCGCCGCCAGGU
+gi|451991897:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991755:1-116              GUGUGGGAGAGUAGG.UCGCCGCCAAAC
+gi|662019919:2-120              GCCUGGGAGAGUAGG.ACGCCGCCGGAU
+gi|452192313:1-118              GUGUGGGAGAGUAGG.UCACCGCCGGAC
+gb|CP012669.1|:c2071292-2071176 CACUGGAAGAGUAGG.UCGCCGCCAGGC
+gi|662019985:3-116              ACCUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991908:1-116              CCAUGUGAGAGUAGG.UCAUUUCCAGGC
+gi|451991887:1-116              CCAUGUGAGAGUAGG.UCAUCGCCAAGC
+gi|452192446:1-110              AUGUGGGAGAGUAGG.UAGUUGCCAU--
+gi|451991931:1-116              GUGUGGGAGAGUAGG.UCGCCGCCGGGA
+gi|451991866:1-117              UCGUGCGAAAGUAGG.UCAUCGCCAGGC
+gb|CP003538.1|:465652-465769    ACGCGGGAGAGUAGG.UCGUUGCCAGGU
+gb|CP009556.1|:c2977167-2977053 CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|507148567:1-110              UUCUGGGAGAGUAAG.UCGCUGCCCUUU
+gb|CP000108.1|:107551-107659    CUGCGGGAGAGUAGG.UCGUCGCCG---
+gi|974573954:1154616-1154733    UCGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|612149278:100728-100841      UUCUGGAAGAGUAGG.UCAUUGCCUAAA
+gb|CP010105.1|:54410-54523      UUCUGGAAGAGUAGG.UCAUUGCCUAAA
+gi|452192431:1-116              UCGUGGGAGAGUAGG.UCGCCGCCAGAA
+gi|451991871:1-117              GUGUGGGAGAGUAGG.ACGUCGCCCGGU
+gi|507148548:1-112              CCGUGGGAGAGUAGG.UAGCCGCCUCUU
+gi|485099263:1-105              UUGUGGGAGAGUAUG.UCGCCGCCU---
+gi|452192343:1-108              -CGUGGGAGAGUAGG.UCGCCGCCUUUU
+gi|507148434:3-120              GUGUGGGAGAGUAGG.ACGCCGCCGAAA
+gi|451992023:1-116              GUGUGGGAAAGUAGG.UCGCCGCCAGAA
+gi|507148443:2-118              CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gi|452192415:1-110              AAUUGGGAGAGUAGG.UAGACGCCAG--
+gi|452192456:1-115              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|662019946:3-116              AUGCGGGAGAGUUGG.UCGUUGCCAG--
+gi|507148456:1-116              GAUCGGGAAAGUAGG.UCGACGCCGG--
+gi|507148467:1-115              GGUCGGGAAAGUUGG.UCGGUGCCAG--
+gi|452192152:1-115              UGGUGGGAGAGUAGG.ACGCGGCCGGAC
+gb|JN173082.1|:1612-1730        GCAUGGGAAAGUAGG.UGGCUGCCAGAU
+gb|GU474895.1|:11785-11903      GCGCGGGAGAGUAGG.UCGCCGCCAGAC
+gb|GU474886.1|:c24601-24485     ACGUGGGAGAGUAGG.UCAUCGCCAAAC
+gb|GU474885.1|:c28506-28393     CCAUGUGAAAGUAGG.UCAUUGCCAG--
+gi|452192265:1-115              CCCUGGGAGAGUAGG.UCGCCGCCGAAA
+gi|452192396:1-108              -UGUGGGAGAGUAGG.UCGUCGCCUUUU
+gi|452192306:1-111              CAGUGGGAGAGUAGG.UAGUCGCCGUU-
+gi|507148610:1-117              UCCUGGGAAAGUAGG.UCGCUGCCAGAU
+gi|452192220:1-115              GUGUGGGAGAGUAGG.ACAUUGCCGUAC
+gi|451991946:2-116              GCGCGGGAGAGUAGG.UCGCCGCCAGG-
+gi|507148520:1-115              UUCCGCGAGAGUAGG.ACGGUGCCAGGU
+gi|452192350:1-110              UGGUGGGAGAGUAGG.UUGGCGCCGAAU
+gi|451992029:1-107              AGGUGGGAGAGUAGG.UCGUCGCC----
+gi|451991997:1-114              CCAUGUGAGAGUAGG.UCAUUUCCAG--
+gi|451991967:1-116              CCAUGUGAGAGUAGG.UCAUUUCCAGGC
+gi|452192535:1-112              CCAUGUGAAAGUAGG.GAAUUGCCA---
+gi|47202:1-118                  CCCUGUGAGAGUAGG.UCACUGCCAGGC
+gi|452192331:1-114              CUGUGGGAACGUAGG.UCGACGCCAC--
+gb|M35164.1|PLL5SRRNA:1-108     -AGUGUGAAAGUAGG.U-AUCGCCGGA-
+gi|451991662:2-107              --AAGGGAAAGUAGG.UCGUUGCCAA--
+gi|452192154:1-114              CCAUGUGAGAGUAGG.UCAUCGCCAAGC
+gi|507148534:1-112              CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|452192440:1-114              ACGCGGGAGAGUAGG.GCGCCGCCGGGC
+gi|452192401:1-116              GUGUGGGAGAGUAGG.UCGCCGCCGGCA
+gi|452192545:1-116              GUGUGGGAGAGUAGG.UCACCGCCGGAC
+gi|451991953:2-118              GCAUGGAAGAGUAGG.UCGCUGCCAGGC
+gi|452192443:1-110              AUCCGGGAGAGUAUG.UCGUUGCCA---
+gi|507148542:1-113              CCGUGUGAAAGUAGG.UAAUCGUCAGG-
+gi|452192309:1-115              GCUUGGGAGAGUAGG.CCGUUGCCCG--
+gi|452192267:1-111              AGGUGGGAGAGUAGG.CCGCCGCCUUU-
+gi|404432500:c268700-268590     ACGCGGGAGAGUAGG.UAGUUGCC----
+gi|451991784:1-113              CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gi|662019913:1-111              ACCCGGGAGAGUAGG.UCGCCGCCACAU
+gi|330752281:16273-16380        -UGUGGGAGAGUAGG.UCGCCACCUU--
+gi|452192206:1-115              CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gi|452192362:1-117              GUGUGGGAGAGUAGG.UCACUGCCGGCA
+gi|451992018:1-116              UCCCGCAAGAGUAGG.UCGCCGCCGGGA
+gi|452192264:1-114              GCAUGGGAGAGUAGG.AUGUUGCCAA--
+gi|485099235:1-115              UCCUGGGAAAGUAAG.UCGUUGCCAG--
+gi|507148546:1-112              ACCCGGGAGAGUAGG.UCGCCGCCACAU
+gi|662019994:1-113              UCAUGCAAGAGUAGG.UCACCGCCAGGG
+gi|452192327:1-115              GGGUGGGAAAGUAGG.GCGGUGCCAG--
+gi|452192411:1-115              GCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gi|485099273:1-118              GUGUGGGAGAGUAAG.UUACCGCCGACC
+gi|451992036:1-112              GUGUGGGAGAGUAGG.UCGCCGCA----
+gi|452192096:1-116              UUGUGGGAGAGUAGG.UCGUCGCCGGAU
+gi|944192093:142971-143088      ACGCGGGAAAGUCGG.UCGCCGCCAGGU
+gb|CP005078.1|:437054-437159    ---GGUGAAAAUAGG.GCAGUGCCAG--
+gi|526641908:1-103              ---GGUGAAAAUAGG.GCAGUGCCA---
+gi|451991589:2-119              GUGUGGGAGAGUAGC.ACGCCGCCGCAU
+gi|451991896:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|507148581:1-114              CCGUGGGAGAGUAGG.UAGCCGCCUCUU
+gi|451992020:1-114              GGUCGGGAAAGUAGG.UCGACGCCG---
+gi|223587978:c1375487-1375371   CCAUGUGAGAGUAGG.ACAUCGCCAGGC
+gi|344169122:985-1098           CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gi|451991939:1-113              GCCUGGGAGAGUAGG.UCGUCGCGA---
+gi|507148553:1-110              CCCUGCGAGAGUAGG.UCGCUGCC----
+gi|452192277:1-112              GUGUGGAAAUGUAGG.UCGCUGCCU---
+gi|485099288:1-116              CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gi|452192092:1-114              ACCUGGGAGAGUAGG.UCGCCGCCAGGC
+gi|452192340:1-118              GUAUGGGAGAGUAGG.UCGUUGCCAGGC
+gi|451991696:3-121              CCGUGGGAAGGUAGG.UCGCCGCCAGAG
+gi|662019943:1-117              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991868:2-117              CCAUGCGAGAGUAGG.ACACUGCCAGGC
+gi|451991823:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991830:1-114              CCAUGUGAGAGUAGG.UCAUUUCCAG--
+gi|452192348:1-114              GGGUGGGAGAGUAAG.UCGAUGCCACUU
+gb|CP001854.1|:c3761242-3761125 GCCUGGGAGAGUAGG.ACGCCGCCGGUU
+gi|485099217:1-110              UAGUGGGAAAGUAGG.UCGUCGCA----
+gi|452192310:1-115              UCCUGGGAAAGUAGG.GCGGUGCGGG--
+gb|CP003989.2|:c3556699-3556583 CCAUGUGAGAGUAGG.UCACCGCCAGGC
+gi|452192367:1-117              UCCUGGGAGAGUAGG.GCGGUGCGGGGG
+gi|452192190:1-116              GGGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|452192301:1-109              AAGUGGGAGAGUAGA.UAGCCGCC----
+gi|452192470:2-119              GCGUGGGAGAGUAGG.UCGCUGCCGGAU
+gi|451991742:1-116              CCCUGCAAGAGUAGG.ACGCCGCCAGGC
+gb|GU474939.1|:c103790-103680   -UCCGGGAGAGUAGG.UCGCCGCCAUUU
+gi|452192162:1-116              UCGUGGGAGAGUAGG.ACGUCGCCGGAC
+gi|452192325:1-113              GUGUGGGAAAGUAGG.UCGUUGCCAA--
+gi|451991979:1-117              GGGCGGGAGAGUAGG.UCGCUGCCGAAA
+gi|485099291:1-115              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|452192330:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gb|CP013862.1|:c2508425-2508307 CCCUGCAAGAGUAGG.ACGCCGCCAGGC
+gi|451991679:2-121              UCGCGGGAGAGUAGG.CCGUUGCCGGCA
+gi|452192376:1-117              CGGUGGGAGAGUAGG.UCGGCGCCCGGG
+gb|CP003240.1|:83241-83356      ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gb|GQ228684.1|:92-207           AGCCGGGAGAGUAGG.ACGUUGCCAG--
+gi|451991973:2-119              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|451991920:1-115              GUGUGGGAGAGUAGG.ACACCGCCGGGC
+gi|451992037:1-118              GCACGGGAAAGUAGG.UCGCCCUCGG--
+gi|451992044:1-112              CCGUGCGAAAGUAGG.ACACCGCCAGGC
+gi|485099260:3-121              UCCUGGAAGAGUAGG.UCGCUGCCGGAU
+gb|CP009452.1|:158690-158806    CCCUGGAAGAGUAGG.ACGUCGCCAGGC
+gi|451991718:4-120              CGCUGGAAGAGUAGG.UCGUCGCCAGGC
+gi|319409085:c134159-134041     GCACGGGAGAGUAAG.UCACUGCCAGGU
+gi|452192406:1-117              UCCUGCGAGGAUAGG.AAGUCGCGGUGC
+gi|452192519:1-115              CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gi|507148418:1-113              -UCCGGGAGAGUAAG.UCUCCGCCCAUU
+gi|452192126:4-120              GUGUGGGAGAGUAGG.UCGCCGCCAAC-
+gi|451991819:1-117              GUGUGGGAGAGUAGG.UCGCUGCCGCAU
+gi|451992038:1-116              GUGUGGGAGAGUAGG.UCGCUGCCGCAU
+gi|485099287:1-113              CCCUGGGAAAGUAGG.UCGUUGCCG---
+gi|451991932:1-114              CGGUGGAAGAGUAGG.GCGUCGCCAGGC
+gi|662019987:1-119              GUGUGGGAGAGUAAG.UUACCGCCGACA
+gi|452192432:1-117              UCCUGGGAGAGUAGG.ACGUCGCCAAGC
+gi|662020012:1-117              ACGUGGGAGAGUAGG.UCACCGCCAAAC
+gi|452192386:2-113              CAGUGUGAAAGUAGG.UCAUCGUCAG--
+gi|451991806:2-113              CCAUGCAAGAGUAGG.UCGUCGUCAG--
+gi|38851:2-119                  GGGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991566:2-115              GCGCGGGAGAGUAGG.UCGCCGCCAG--
+gi|662019932:1-113              GCCUGGGAGAGUAUG.GAUUUGCCA---
+gi|451991999:2-118              CCAUGUGAGAGUAGG.UCAUCGUCAAGC
+gi|507148438:3-120              GUGUGGGAGAGUAGG.UGACCGCCGACC
+gb|CP009794.1|:c305500-305387   CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gb|JX556289.1|:c400-283         GCACGGGAGAGUAGG.UCGCUGCCAGGU
+gb|M11544.1|TFERRATNO:3-118     ACCUGGGAGAGUAGG.UCGCUGCCAGGC
+gi|452192351:1-110              AUGUGGGAGAGUAGG.UCGGUGCC----
+gb|M76578.1|ABCRR5SI:3-118      CCGUGGGAAAGUCGG.UCGCCGCCAGGU
+gi|452192308:1-114              GUGUGGAAACGUAGG.UCGCCGCCUG--
+gi|451992016:1-112              CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|451991673:1-115              UUCCGCAAGAGUAGG.ACGUUGCCAGGC
+gi|451991646:1-115              UUCCGCAAGAGUAGG.ACGUUGCCAGGC
+gi|452192389:1-116              CCAUGCGAGAGUAGG.UCAUCGCCAAGC
+gi|452192441:1-114              AUGUGCGAAAGUAGG.UCACCGCCAGGC
+gb|CP000159.1|:c3324875-3324762 GGCCGGUAGAGUAGG.ACGUUGCCAGGA
+gb|CP003546.1|:c900696-900580   CCAUGUGAGAGUAGG.GAGCCGCCAGGU
+gi|452192316:1-113              CCCCGGGAAAGUAAG.UCGUAGCCA---
+gi|1045039:2-119                GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|452192394:1-117              GGGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|507148500:1-115              GGGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|452192090:2-119              CCAUGUGAGACUAGG.ACACCGCCAGGC
+gi|662019968:1-116              CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gi|452192213:1-116              GCACGGGAAAGUAGG.UCGUCCCGGG--
+gi|451991625:2-118              CCAUGCGAGAGUAGG.UCACCGCCAGAC
+gi|452192536:1-118              GUGUGGGAGAGUAGG.ACACCGCCGGAA
+gi|512125287:1-116              CCCUGUGAGAGUAGG.ACGCCGCCAAGC
+gi|452192261:1-115              CCGUGGGAGAGCAGG.ACGCCGCUGACC
+gi|662019957:1-115              CCCUGGGAGAGUAGG.UCACCGCCAAAC
+gi|451991724:1-116              CUGUGUGAGAGUAGG.CCAUUGCCAACC
+gi|451991858:3-120              GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|451991948:1-116              GGGUGGGAGAGUAGG.UCACCGCCGGCC
+gb|JN590777.1|:288-403          UCCUGGGAGAGUAGG.ACGUUGCCAA--
+gi|1045235:2-120                GUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|451991801:1-114              UCCCGGGAGAGUAGG.UCGCUGCCGG--
+gi|452192445:1-113              CCAUGUGAAAGUAGG.UCACUGCCAG--
+gi|6468276:1-117                CCCUGCAAGAGUAGG.UCGCUGCUAGGC
+gb|CP006947.1|:407829-407945    CCAUGUGAGAGUAGG.ACAUCGCCAGGC
+gb|GU474881.1|:c27476-27357     UCGUGGGAGAGUAGG.UCGCUGCCGGGA
+gb|CP013015.1|:c265431-265313   CCGUGGGAAAGUAGG.UAGCUGCCGGGU
+gi|452192305:1-116              CCAUGCGAGAGUAGG.U-AGUGCCCGGG
+gi|451991836:1-114              CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gi|451991574:1-106              -AGCGGGAGAGUAGG.UCGCUGCCGGAA
+gi|452192226:1-117              AUGUGGGAGAGUAGG.UCGCCGCCAGGG
+gb|GU474851.1|:c16045-15932     UAUCGGGAGAGUAUG.UCGCCGCCCUUU
+gi|452192104:1-113              AUGUGGGAAAGUAGG.CCGCUGCCAA--
+gb|CP014865.1|:260867-260983    CCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gb|CP013133.1|:c1167901-1167785 GCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gi|452192542:1-112              AGGUGGGAGAGUAGG.AAGCCGCCUUAC
+gi|308271278:c576085-575968     GGGUGGGAGAGUAGG.ACACCGCCGAAA
+gb|CP012042.1|:2201200-2201314  CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|452192422:1-112              AGGUGGGAGAGUAGG.UCGCCGCCUUCU
+gb|M60936.1|CLBRRNAB:2-119      CUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|451991687:1-115              CCCCGGGAGAGUAGG.UCGUCGCCAG--
+gi|451991942:1-114              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gb|M11537.1|TFERRATN:1-117      CCAUGUGAAAGUAGG.UCAACGCCAGGC
+gi|452192215:1-108              -CGCGGGAGAGUAGG.UCGCUGCCG---
+gi|451992013:1-114              UCCUGCGAGAGUAGG.UCGUUGCCAG--
+gb|CP011367.1|:c2565661-2565545 CCAUGUGAGAGUAGG.UCACCGCCAGGC
+gb|CP007239.1|:c267-150         ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|507148545:1-112              CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gi|4468666:2-115                CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gb|AF416766.1|:2879-2995        ACAUGGGAGAGAGGG.UCGCUGCCAGCC
+gb|AF416765.1|:2877-2991        ACAUGGGAGAGUAAG.UCACUGCCA---
+gb|CP000555.1|:357385-357499    CCGUGUGAAAGUAGG.ACAUUGUCAGGC
+gi|485099256:2-121              GUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|526641902:1-115              CCCUGGGAGAGUAGG.UCGUUGCCGGAA
+gi|507148571:1-110              -UGUGGAAGAGUAGG.UCGCCGCCUUCC
+gi|451992027:1-104              -UGCGGGAGAGUAGG.UCGUUGCCG---
+gi|82523815:1059-1176           UGGUGGGAGAGUAGG.AAGUUGCCGGGU
+gi|82523856:1049-1164           AGGUGGGAGAGUAGG.ACGUCGCCGG--
+gb|EU819142.1|:c1163-1045       CUGUGGGAGAGUAGG.UCAUCGCCAAUC
+gi|330751977:c15315-15203       AUGUGGGAGAGUAGG.UCGCCGCCUUUC
+gb|GU180083.1|:c9355-9239       CUGUGGGAGAGUAGG.ACACUGCCGGGA
+gb|GU474920.1|:13810-13926      CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gi|507148594:1-116              CCGCGGGAGAGUAGG.UCGCUGCCAUGU
+gi|451991842:1-115              GUGUGGGAGAGUAGG.GCACCGCCAAAC
+gi|452192125:1-108              ACCUGGUAAAGUAGG.UAGUCGCCA---
+gi|451991816:3-117              CCGUGUGAAAGUAGG.ACAUCGUCAGGC
+gi|452192195:1-117              CCAUGCGAGAGUAGG.U-AGCGCCC---
+gi|451991933:1-117              CCAUGCGAGAGUAGG.U-AGCGCCC---
+gi|662019962:1-113              CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|507148516:1-115              UCGUGGGAGAGUAAG.UCACCGCCAGAC
+gb|CP012909.1|:64567-64682      UCGUGGGAGAGUAAG.UCACCGCCAGAC
+gi|451991768:2-117              CCCCGGGAGAGUAGG.UCACCGCCAAAC
+gi|662019931:1-117              GUGUGGGAGAGUAGG.ACGCCGCCGGCA
+gi|452192538:1-116              GGGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|82523952:1183-1297           GAUUGGAAAUGUAGG.UCGCUGCCUA--
+gb|AF267889.1|AF267889:1-112    CCCUGUGAGAGUAGG.ACGCCGCC----
+gi|507148554:1-109              -CGCGGGAGAGUAGG.UCGCUGCCAGGA
+gi|662019937:1-111              GUAUGGGAGAGUAAG.UCGUUGCCA---
+gi|451991642:2-119              GCACGGGAGAGUAAG.UCGCUGCCAGGU
+gi|452192178:1-116              CCCUGUGAAAGUAGG.ACGUCGCCGGGC
+gi|452192518:1-111              UCGCGCCAAGAUAGG.UUGUCGCCAGGA
+gi|43349:2-121                  UCGUGCGAGAGUAGG.UCAUCGCCAGGC
+gi|452192101:1-116              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192124:1-117              GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|452192434:1-116              GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gb|M33885.1|CYTRRAA:1-111       ACGUGGGAGAGUAGG.UCGGUGCCAA--
+gi|452192363:1-113              CCGUGGGAGAGUAGG.U-AUUGCCAG--
+gi|452192143:1-111              CCGUGGGAGGAUAGG.GCGCCGCGC---
+gi|452192551:1-117              GUACGGGAGAGUAGG.UCGCCGCCAAGU
+gi|451991561:1-114              GUAUGGGAGAGUAGG.UCGUUGCCAA--
+gi|451991559:1-113              GUAUGGGAGAGUAAG.UCGUUGCCAA--
+gi|451991595:1-114              GUAUGGGAGAGUAGG.UCGUUGCCAA--
+gi|451991669:1-114              GUAUGGGAGAGUAGG.UCAUUGCCAA--
+gi|452192507:1-114              GUAUGGGAGAGUAGG.UCGUCGCCAA--
+gi|485099265:1-110              GUAUGGGAGAGUAGG.UCGUCGCC----
+gi|452192550:1-116              GUGUGGGAGAGUAGG.UCGCCGCCAAGU
+gi|451991732:2-119              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gb|CP010517.1|:c1904053-1903939 CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gi|48330:3-121                  CACUGGAAGAGUAGG.UCGUCGCCAGGC
+gi|452192467:1-113              CUAUGCAAGAGUAGG.UCACCGCCAGGG
+gi|452192232:1-115              CUGUGGGAGAGUAGG.UCGCCGCCAGGG
+gi|452192187:1-114              CCGUGGGAGAGUAGG.UCGCCGCCGGUC
+gb|GU324241.1|:5261-5378        CCCUGGGAGAGUAGG.UCGCUGCCAGGC
+gi|451991807:3-119              GCGUGGGAGAGUAGG.UCGCUGCCGGGU
+gi|451991889:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991984:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991623:16-125             --AAGGGAGAGUAGG.UCGCUGCCAAGU
+gi|330752167:c614-504           -UCCGGGAGAGUAGG.UCGCCGCCAUUU
+gi|452192183:1-117              CUGUGGGAGAGUAGG.UCGCUGCCAGAG
+gi|507148490:1-116              CCCUGUGAGAGUAGG.ACGUUGCCAGGC
+gi|451991664:1-112              CCUUGCGAGAGUAGA.ACGCUGCCG---
+gi|452192151:1-108              AUGCGGGAGAGUAGG.UAGCUGCCA---
+gi|452192485:1-114              CCCUGGGAAAGUAGG.UCAUCGCCAG--
+gb|CP011489.1|:1116931-1117048  CUCUGGGAGAGUAGG.UCGUCGCCGGAA
+gb|AY242847.1|:60-175           UCCUGGGAGAGCAGG.ACGUUGCCAA--
+gb|CP003883.1|:900336-900441    --AAGGGAAAGUAGG.UCGUUGCCAA--
+gi|451991581:1-115              GCCUGGGAGAGUAUG.GAUUUGCCAA--
+gi|451991710:1-113              CCCUGUGAGAGUAGG.ACGUCGCUUCGC
+gi|662020023:1-118              GCACGGGAAAGUAGG.UCGUCCCGGG--
+gi|485099270:1-114              CCAUGCAAGAGUAGG.UCACCGCCAGGG
+gi|451991864:1-115              GUGUGGGAGAGUAGG.UCGCUGCCCGGU
+gi|452192258:1-113              GCGCGGGAGAGUAGG.UCGCCGCCGG--
+gb|GU567959.1|:c25280-25160     CUGUGCGAGAGUAAG.UUGUUGCCAGUC
+gi|46916688:c266432-266316      CCAUGUGAGAGUAGG.GCAUCGCCAGGC
+gi|452192300:1-117              GCCCGGGAGAGUAGG.UCGCCGCCGGAA
+gb|CP008700.1|:c1753988-1753871 CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gi|451991678:1-119              GUGUGGGAGAGUAAG.UCACCGCCGGAA
+gi|337294156:c41069-40956       GUGUGGGAGAGUAGG.UCGCUGCCAA--
+gi|451991974:1-114              CCAUGUGAGAGUAGG.UCAUUUCCAG--
+gi|451991590:2-118              CCAUGUGAGAGUAGG.UCAUCGCCAAGC
+gi|451991688:1-111              AUCCGCGAGAGUAGG.ACGUUGCC----
+gi|507148511:1-115              CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gb|KF040403.1|:5221-5338        ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|452192421:1-117              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|526641910:1-116              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|452192528:1-115              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gb|HM454280.1|:28084-28201      UCCUGGGAAAGUAGG.UCGCUGCCGGCA
+gb|EU285525.1|:5589-5706        CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|451991985:1-117              GCACGGGAGAGUAGG.UGGCUGCCAGAU
+gi|485099284:1-117              GUGUGGGAGAGUAGG.UCACCGCCGAUU
+gb|GU567972.1|:c27755-27638     CGGUGGGAGAGUAGC.GCGACGGUGGGA
+gi|452192392:1-115              GUGUGGGAGAGUAGG.UCGCCGCCAACC
+gi|452192349:1-115              GGGUGGGAAAGUAGG.GCGGUGCCAG--
+gi|451991555:2-117              GCACGGGAAAGUAGG.UCGCUGCCAG--
+gb|AY744399.1|:60759-60876      GCACGGGAGAGUAGG.UCGUCGCCUGGU
+gi|451991904:1-114              CCAUGUGAGAGUAGG.UCAUCGCCAAGC
+gi|451991703:3-119              GCACGGGAGAGUAGG.UCGCCGCCAGGU
+gi|452192138:1-108              -AGCGGGAGAGUAGG.UCGCCGCCAGUU
+gi|451992002:1-114              CCAUGUGAGAGUAGG.UCAUUUCCAGGC
+gi|452192188:1-119              GUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gi|452192366:1-117              GCGUGGGAAAGUAGG.ACGCCGCCGAAA
+gi|452192416:1-114              GCGUGGGAGAGUAGG.UCACCGCCAAAC
+gi|451991695:2-118              CCAUGUGAGAGUAGG.UCAUUUCCAGGC
+gi|451991645:2-118              CCAUGCGAGAGUAGG.UCAUCGUCAGGC
+gb|M33888.1|FVBRRAA:2-119       GUGUGGGAGAGUAGG.UCACCGCCGAAC
+gi|507148466:1-113              UCCUGGGAGAGUAGG.UCGUCGCCA---
+gi|452192332:1-112              AAGUGGGAGAGUAGG.UCGUCGCCUUUU
+gb|JN092297.1|:185-302          CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|374855139:12123-12240        CUCUGGGAGAGUAGG.UCAUCGCCAAGA
+gi|451991791:1-113              UUGUGGGAAAGUAGG.CCGUCGCCAA--
+gi|507148514:1-113              CCCUGGGAGAGUAAG.ACGUUGCCGGAA
+gi|452192387:1-116              CCCUGGGAGAGUAGG.UCGCUGCCGGAA
+gb|AY281352.1|:c916-797         GUGUGGGAGAGUAGG.UCACUGCCGGGA
+gb|GU474930.1|:5530-5646        GCAUGGAAGAGUAGG.UCGCUGCCAGGC
+gb|CP007141.1|:c616038-615920   CCAUGCGAGAGUAGG.U-AGUGCCCGGG
+gi|452192240:1-109              -CGCGGGAGAGUAGG.UCGCUGCCGGAA
+gi|451991978:2-119              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|452192500:1-109              UUGUGGAAGAGUAGG.UCGCCGCCUUC-
+gi|485099222:1-117              UCCUGGGAGAGUAGG.UCGGUGCGGGGG
+gi|451991862:4-118              CCAUGCGAGAGUAGG.UCAUUUCCAG--
+gi|507148582:1-114              ACACGGGAGAGUAAG.UCGCUGCCAGGU
+gi|662019991:1-103              ----GGGAAAAUAGC.ACGUUGCCAG--
+gi|452192177:1-115              CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gi|452192280:1-115              GCACGGGAAAGUAGG.UGGCUGCCGG--
+gi|452192548:1-105              -UGUGGGAGAGUAUG.UCGCCGCCU---
+gb|CP011075.1|:188893-189010    GGCCGGGAGAGUAGG.ACGUUGCCAGGC
+gb|EU723620.1|:400-513          CCCUGGGAGAGUAGG.ACGUUGCCAG--
+gi|507148502:1-115              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|507148461:1-117              ACGUGGGAGAGUAAG.UCACUGCCAAAC
+gb|CP012160.1|:c2905493-2905375 ACGUGGGAGAGUAAG.UCACUGCCAAAC
+gi|452192130:1-115              CCCUGGGAGAGUAGG.GCGCCGCCGACC
+gi|452192163:1-116              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192494:1-113              GGGUGGGAGAGUAGG.UCGCUGCC----
+gi|452192254:1-115              ACGCGGGAGAGUAGG.UCGUUGCCAGGU
+gi|452192299:1-117              GUGUGGGAGAGUAGG.ACGCAGCCGGAC
+gi|451991831:1-113              CCGUGUGAAAGUAGG.ACAUCGUCAGGC
+gi|485099215:1-111              AUGCGGGAGAGUAGG.GAGCUGCCUG--
+gi|452192243:1-114              GCCCGGGAGAGUAGG.GCGGUGCA----
+gi|374852364:37530-37645        CGGUGGGAGAGUAGG.UAGUUGCCGG--
+gi|374852692:c17317-17202       GUGUGGGAGAGUAGG.UCGUUGCCAA--
+gb|GU567999.1|:c14701-14585     CCGUGUGAAAGUAGG.ACACUGCCAGGC
+gi|452192097:1-113              UCCUGGGAAAGUAAG.UCGUUGCCA---
+gi|451991845:1-115              CCGUGGGAGAGUAGG.UCGUCGCCC---
+gi|959677888:1189303-1189416    CCGUGUGAAAGUAGG.UCAUCGCCAGGC
+gb|EU686608.1|:c9613-9494       UCGUGGGAGAGUAGG.UCGCUGCCGGGA
+gb|GU474882.1|:11471-11587      UUGUGCGAGAGUAGG.UAGUCGCCAAAU
+gi|507148636:6-125              CCAUGUGAGAGUAAG.UCAUCGCCAGCU
+gb|AY744396.1|:c42608-42492     CCAUGCGAGAGUAGG.ACAUCGUCGGGC
+gb|EF157669.1|:c10980-10866     CCGUGUGAAAGUAGG.ACAUCGUCAAGC
+gb|GU474853.1|:24795-24910      CUGUGGGAGAGUAGG.UCGCCGCCAGAG
+gi|452192271:1-117              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192088:1-115              GCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gi|4468257:2-115                CCGUGUGAAAGUAGG.UCAUCGUCAGGM
+gi|452192393:1-115              CCCCGGAAGAGUAGG.GCGUCGCCAGGC
+gb|GU452709.1|:181-299          GCAUGGGAAAGCAGG.UGGCUGCCGGGU
+gi|452192161:1-114              CCGUGGGAAAGUAGG.UCGCUGCCAGGA
+gi|526641879:3-119              CCAUGUGAGAGUAGG.ACACCGCCAGGU
+gb|CP012370.1|:152653-152770    CCCCGGGAGAGUAGG.ACACCGCCAGGA
+gi|485099261:3-120              CCCUGGGAGAGUAGG.UCGCUGCCAGGC
+gb|AY763503.1|:255-370          UCCUGGGAGAGCAGG.ACGUUGCCAA--
+gi|451992008:1-114              CCGUGUGAAAGUAGG.UAACUGCCGGGC
+gb|CP007501.1|:37249-37364      CCGUGUGAAAGUAGG.UAACUGCCGGGC
+gi|452192279:1-114              CCAUGCGAGAGUAGG.UCACCGCCAGGC
+gi|451991923:1-113              GCACGGGAAAGUAGG.UGGCUGCCG---
+gi|452192123:1-113              CCAUGUGAGAGUAGG.ACACUGCCAGGC
+gi|451991659:3-121              GUGUGGGAGAGUAAG.ACGCCGCCGGCA
+gi|451991699:1-112              GUGUGGGAGAGUAGG.UUAUCGCCG---
+gi|452192153:1-116              GUGUGGGAGAGUAGG.ACACAGCCGCAC
+gi|452192134:2-120              GUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gi|451991872:2-120              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|662020002:3-118              GUGUGGGAGAGUAGG.ACGCUGCCGA--
+gi|452192175:1-116              GGGCGGGAGAGUAGG.UCGCUGCCGGGG
+gi|452192364:1-114              ACGUGGGAGAGUAGG.UCACCGCCAAAC
+gi|485099236:1-117              UUAUGGGAGAGUAGG.UCGCUGCCAGAA
+gi|662020013:1-113              CUGUGGGAGAGUAGG.UCAUCGCCC---
+gi|67003493:956-1069            GCGCGGGAGAGUAGG.UCGCCGCCGG--
+gi|485099268:1-114              GCACGGGAGAGUAAG.UCGCUGCCAGGU
+gi|452192129:1-116              GUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|452192471:2-117              CCAUGUGAAAGUAGG.UCACUGCCAGGC
+gi|297374631:c14625-14508       UCCUGGGAAAGUAGG.UCGCUGCCGGCA
+gb|S39231.1|:2-119              ACCUGGGAGAGUAGG.UCGUCGCCAGGC
+gi|1045040:2-119                GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gb|M34759.1|MAGRRAA:1-118       UCGUGCGAAAGUAGG.GAAUUGUMAAGC
+gi|507148570:1-110              -UCCGGGAGAGUAAG.UCGCCGCCUUUA
+gi|451991805:1-114              GAUUGGAAAUGUAGG.UCGCUGCCUA--
+gi|861108:1-119                 UGGUGGGAGAGUAGG.ACGCCGCCGGGA
+gi|662019990:1-117              GUGUGGGAGAGUAAG.ACACCGCCGACC
+gi|452192509:4-120              GUGUGGGAGAGUAAG.UCACCGCCGGC-
+gi|452192222:1-114              UCCUGGGAGAGUAGG.UCGGUGCG----
+gi|451991663:1-118              GUGUGGGAGAGUAGG.ACACCGCCGGAA
+gi|452192499:1-117              GUGUGGGAGAGUAGG.ACACCGCCGGAA
+gi|451991825:1-114              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|662019921:1-115              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|451991794:1-112              GCCUGUGAAAGUAGG.UCAUCGUCAGA-
+gi|452192465:1-115              UCCUGGGAAAGUAAG.UCGUUGCCAG--
+gb|CP001078.1|:c3376625-3376505 GUGUGGGAGAGUAAG.ACGUUGCCAGGU
+gi|406718232:c3565558-3565438   GUGUGGGAGAAUAAG.ACGUUGCCAGGU
+gi|451991649:1-117              CUGUGGAAGAGUAAG.UCGUUGCCAGAU
+gb|L37448.1|ROORRB:3-118        CGGCGGGAGAGUCGG.UCAGCGCCGAGC
+gb|CP012371.1|:c1248792-1248677 ACAUGCGAAAGUAGG.UCACUGCCAGGC
+gi|451991927:2-118              GCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gi|967041:2-119                 GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991996:1-117              CCCCGGGAGAGUAGG.ACGUUGCCGGAU
+gi|451991610:1-112              GUGUGGGAAAGUAGG.UCGCCGCC----
+gb|CP005488.1|:292160-292273    UUCUGGGAGAGUAAG.UCGCUGCCCUAU
+gi|451992033:1-106              CAGCGGGAGAGUAGG.UCGUCGCCG---
+gi|452192493:c107-1             -AGUGGGAGAGUAGG.UCGCCGCCAGUU
+gi|452192323:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|4468788:2-115                CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|330862872:c7391-7275         CCAUGCGAGAGUAGG.ACACUGCCAGGC
+gb|DQ267496.1|:5711-5826        UCGUGGGAGAGUAGG.UCGUCGCCGGAU
+gi|451992009:1-113              GCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|452192140:1-113              AUGCGGGAGAGUCGG.UCGCUGCCAG--
+gb|EU644449.1|:4888-5001        AUGCGGGAGAGUAGG.UCGCUGCCAG--
+gi|451991910:3-121              ACGUGGGAGAGUCGG.UCGCCGCCAGGU
+gb|CP006651.1|:34556-34672      ACGUGGGAGAGUAGG.UCACCGCCAGAC
+gi|451991656:2-119              ACGCGGGAAAGUCGG.UCGCCGCCAGGU
+gi|452192460:1-115              GCAUGGGAGAGUAAG.UCGCUGCCAAGC
+gi|452192236:1-113              CCCUGGGAGAGUAGG.ACGUUGCC----
+gi|452192436:1-115              CCCUGCAAGAGUAGG.UCGUUGCUAGGC
+gi|451991899:1-117              CCCUGCAAGAGUAGG.UCGCUGCUAGGC
+gi|451991993:1-114              GCCUGCGAGAGUAGG.ACGUUGCCGGGC
+gi|507148440:2-120              UUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|507148615:1-117              GUGUGGGAGAGUAGC.ACGCCGCCGCAC
+gi|451991743:1-117              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gb|M16170.1|AUTRRA:2-119        CUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192365:1-116              CCGUGGGAGAGCAGG.ACGCCGCUGACC
+gi|530669580:c2208543-2208427   CCAUGUGAGAGUAGG.UCACCGCCAGGC
+gi|452192115:1-117              GUGUGGGAGAUUAGG.UGAUCGCCGGCA
+gi|452192118:3-120              GCACGGGAGAGUAAG.UCGCCGCCAGGU
+gi|507148482:1-117              GUGUGGGAGAGUAGG.ACGCUGCCGGAA
+gi|662019992:1-115              CCAGGCAAGAGUAGG.U-ACUGCCAGGG
+gb|U78300.1|TCU78300:342-457    GCGUGUGAAAGUAGG.ACAUCGUCAGGC
+gi|636795890:259502-259616      CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|451992010:1-115              ACCUGGGAGAGUAGG.UCGUUGCCAGGC
+gi|526641903:2-116              UUGUGGGAGAGUAGG.ACACCGCCG---
+gi|451992025:1-113              CCGUGGGAGAGUAGG.UCGCUGCCG---
+gi|452192110:1-116              GCACGGGAAAGUAGG.UGGCUGCCGGAU
+gi|452192184:1-110              GGGCGGGAGAGUAGG.UCGGUGCCA---
+gi|485099259:1-114              GUGUGGGAAAGUAGG.UCGAUGCCAA--
+gi|451991877:1-117              GUGUGGGAAAGUAGG.UCGCCGCCGGGA
+gi|451991798:2-119              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gb|CP007440.1|:1428619-1428734  GCUUGGAAGAGUAGG.UCGCUGCCAGGU
+gi|451991714:2-120              GUGUGGGAGACUAGG.ACGUCGCCGGAC
+gi|507148555:1-109              -CUCGGGAGAGUAGG.UCGCUGCCGGAU
+gi|452192336:1-109              -CGCGGGAGAGUAGG.UCGCUGCCGGUA
+gi|507148601:1-116              CCGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|391827:2-119                 GUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gb|CP008936.1|:314708-314825    GCGUGGAAGAGUAGG.UCGCCGCCAGGC
+gi|452192360:1-110              AUGUGGGAGAGUAGG.UCGGUGCCGA--
+gi|451991655:2-116              CUGUGGGAGAGUAGG.ACACCGCCG---
+gi|391696:2-119                 GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192244:1-116              GUGUGGGAGAGUAGG.ACACCGCCG---
+gi|451992043:1-115              UCAUGGGAAAGUAGG.UCGCUGCCAG--
+gi|507148565:1-108              -AGCGGGAGAGUAGG.UCGUCGCCACUU
+gi|451991804:1-112              GUGUGGGAAAGUAGG.UCGCCGCC----
+gi|452192539:1-116              GUGUGGGAGAGUAGA.ACGCCGCCGGAU
+gi|507148515:1-114              UUGUGGAAACGUAAG.UCGUCGCCAACU
+gb|EF667147.1|:21-137           UUGUGGAAACGUAGG.UCGCUGCCAGUU
+gi|452192262:1-108              -AGUGGGAGAGUAUG.UCGCCGCCUUCU
+gi|452192260:1-117              CUAUGGGAGAGUAGG.UCGCUGCCGGAA
+gi|451991969:1-116              CCAUGCGAGAGUAGG.ACACUGCCAGGC
+gi|507148538:1-111              AUGCGGGAGAGUAGG.UGGCCGCCU---
+gi|507148541:1-111              AUGUGGGAGAGUAGG.UAGCUGCCU---
+gi|507148578:1-111              AUGCGGGAGAGUAGG.UGGCCGCCU---
+gi|452192377:1-111              -ACCGGGAGAGUAGG.UAACCGCCUUUC
+gi|452192448:1-111              UUGUGGGAGAGUAGG.UAGCCGCCGUUU
+gi|507148495:1-115              CCGUGUGAAAGUAGG.UAAUCGUCAGGC
+gi|451991723:2-116              CCGUGUGAAAGUAGG.ACAUCGUCAGGC
+gi|451991876:1-117              GCGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|452192194:1-114              UUCCGCUAGAGUAGG.ACGUUGCCAGGC
+gi|662020016:1-115              CGAUGGAAGAGUAGG.GCGCCGCCAGGC
+gi|662019973:1-114              GCACGGGAGAGUAGG.UCGCUGCCAGGU
+gi|4468059:2-115                CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|452192537:1-110              CCAUGUGAGAGUAGG.UCAUCGUCA---
+gi|452192491:1-112              CCAUGUGAGAGUAGG.UCAUCGUCAGAC
+gi|451991667:1-109              -AGGGGGAGAAUAGG.UCGCUGCCCAAA
+gi|452192199:1-115              GUGUGGGAGACUAGC.ACGCUGCCGC--
+gi|507148465:1-117              ACGUGGGAGAGUAGG.UCACCGCCAAAC
+gi|452192468:1-115              GCGUGGGAGAGUAGG.UCGUCGCCGG--
+gi|452192402:1-116              CCCCGGAAAAAUAGG.UCGCCGCCAG--
+gi|452192379:1-109              GGGUGGGAGAGUAGG.UCGCUGCCAA--
+gi|451991992:5-123              CCAUGCGAGAGUAGG.U-AGCGCCCGGG
+gb|KP239990.1|:c22054-21936     CCAUGCGAGAGUAGG.U-AGCGCCCGGG
+gi|452192274:1-117              AUGUGGGAGAGUAGG.UCGCUGCCGGUC
+gi|452192294:1-117              AUGUGGGAGAGUAGG.UCUCUGCCGGAU
+gi|451992022:1-118              CUGUGGGAGAGUAGG.ACGCCGCCGGGU
+gb|L24488.1|HBTRRNA5S:2-119     GCACGGGAGAGUAAG.UCGCUGCCAGGU
+gi|47147:1-117                  CCCUGUGAGAGUAGG.UCACUGCCAGGC
+gi|1045273:2-119                GUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|451991692:2-119              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|452192225:1-115              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192182:1-115              GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|452192410:2-117              GUGUGGGAGAGUAGG.ACACCGCCG---
+gi|452192230:1-115              GUGUGGGAGAGUAGG.AAACCGCCGCAC
+gi|452192289:1-113              GUGUGGGAGAGUAGG.UUGUCGCCG---
+gb|M16174.1|PISRRA:2-120        CUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gb|M16171.1|CURRRA:2-119        UUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991709:1-115              CUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|1045203:2-119                GUGUGGGAGAGUAGG.UCGCCGCCGUAA
+gb|M29856.1|BTTDNA:1-115        CCCUGGGAGAGUAGG.UCGUUGCCAGGC
+gi|507148590:1-116              GGGUGGGAGAGUAGG.ACACCGCCGUAC
+gi|452192164:1-117              GUGUGGGAGAGUAGG.UCACCGCCGGAA
+gb|AF116563.1|:6176-6294        GUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gi|391775:1-118                 GGGUGGGAGAGUAGG.UCGCUGCCACGG
+gi|452192205:1-115              GUGUGGGAGAGUAGG.UCGCUGCCGGGC
+gi|452192185:1-116              GUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gi|391740:2-119                 GUGUGGGAGAGUAGG.ACGCCGCCGGAA
+gi|391601:2-120                 GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192529:2-119              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|24427855:5230-5347           CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|126347282:c1469819-1469702   CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|507148604:1-115              CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gb|M59335.1|STMJL855S:2-119     CUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|451991722:2-120              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|452192444:1-116              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|452192204:1-115              GGGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|967042:2-119                 CUGUGGGAGAGUAGA.ACACCACCGAAC
+gi|452192513:2-120              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991818:1-117              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|452192144:3-121              GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|1045222:2-120                GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|1045216:2-120                GUGUGGGAGAGUAGG.UCGCCGCCGACA
+gi|967055:2-119                 CUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991650:2-119              GUGUGGGAGAGUAGG.ACACCGCCGACA
+gi|1045287:3-121                GUGUGGGAGAGUAGG.ACACCGCCGACA
+gi|2198532:5734-5852            GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|662020008:1-115              GUGUGGGAGAGUAGG.ACACCGCCGGAA
+gi|8250508:28-145               GUGUGGGAGAGUAGG.ACGCCGCCGAAC
+gi|451991875:3-116              GGGUGGAAAAGUAGG.ACACCGCCGAAC
+gb|CP009483.1|:c1403850-1403736 GGGUGGAAAAGUAGG.ACACCGCCGAAC
+gi|967054:3-116                 GGGUGGAAAAGUAGG.ACACCGCCGAAC
+gi|507148600:1-115              CUGUGGGAGACUAGG.AAGCCGCCGGAC
+gi|507148471:1-117              GUGUGGGAGAGUAAG.ACGCCGCCGGAC
+gi|485099223:1-116              GGGUGGGAGAGUAAG.ACGCCGCCGGAA
+gi|451991620:2-119              GUGUGGGAGAGUAAG.ACGCUGCCGGAA
+gi|756351692:c165-48            CUGUGGGAGACUAGG.AAGCCGCCGGAC
+gb|CP008796.1|:c1295779-1295664 CCCUGGGAGAGUAGG.UCGGUGCCCG--
+gi|662019996:1-113              UCCCGGGAGAGUAGG.ACGUGGCUG---
+gi|507148474:1-117              GUGUGGGAGAGUAGG.ACGCCGCCGGCA
+gi|451991745:3-120              GUGUGGGAGAGUAGG.UUACCGCCGACC
+gb|M16204.1|CORRRAXB:3-118      GUGUGGGAGAGUAGG.UCACCGCCGG--
+gi|967057:2-119                 GGGUGGGAGAGUAGG.UCGCCGCCGGAC
+gi|452192223:1-115              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|967058:2-120                 GGGUGGGAGAGUAGG.UCGCCGCCGGAC
+gb|M16172.1|CFIRRA:2-119        GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|39490:2-120                  GUGUGGGAGAGUAGG.UCACCGCCGGAA
+gi|757805207:c1933401-1933286   GUGUGGGAGAGUAGC.GCGUCGCCGC--
+gi|781876604:c1571253-1571138   GUGUGGGAGAGUAGC.ACGUCGCCGC--
+gi|507148472:1-117              GUGUGGGAGAGUAGC.ACGCCGCCGCAC
+gi|507148609:1-117              GUGUGGGAGAGUAGC.ACGCCGCCGCAC
+gi|118764602:c1525337-1525222   GUGUGGGAGAGUAGC.AAGUCGCCGC--
+gb|CP010437.1|:c1617392-1617277 GUGUGGGAGAGUAGC.AAGUCGCCGC--
+gi|451991867:1-117              GUGUGGGAGAGUAGG.UCACCGCCGGAA
+gb|CP007003.1|:1078475-1078593  GUGUGGGAGAGUAGG.ACACCGCCGUCA
+gi|451991990:2-120              GUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|451991643:1-110              CCCUGCGAGAGUAGG.UCGCUGCC----
+gi|16415123:c148470-148353      CCCUGCGAGAGUAGG.UCGCUGCCGGGC
+gi|507148522:1-115              CCCUGCGAGAGUAGG.UCGCUGCCGGGC
+gi|507148503:1-116              CCCUGCGAGAGUAGG.UCGCUGCCGGGC
+gb|AF160963.1|AF160963:480-597  CCCAGCGAGAGUAGG.UCGCUGCCGGGC
+gb|S73542.1|:2-119              CUGUGGGAGAGUAGG.ACACCGCCGGAC
+gi|452192557:1-114              CCCCGUGAGAGUAGG.ACGCCGCCACAU
+gi|39765:1-117                  CCCUGCAAGAGUAGG.ACGUUGCCAGGC
+gi|452192384:1-115              CCCUGGGAGAGUAGG.UCGCUGCCAG--
+gi|452192390:1-115              CCCUGGGAGAGUAGG.UCGUCGCCAG--
+gi|452192433:1-114              CCCUGGGAAAGCAGG.ACAUUGCCAG--
+gi|451991844:1-115              GUGUGGAAGAGUAGG.UCGUUGCCAG--
+gi|451991810:1-115              CCCCGGGAGAGUAGG.ACACCGCCAGGA
+gi|507148488:1-113              GCCCGGGAAAGUAGG.UCUCUGCCA---
+gi|452192273:1-109              -CUCGGGAGAGUAGG.UCGCUGCCGGAA
+gi|451991905:1-117              UCCUGGGAAAGUAGG.UCGCUGCCAGAU
+gi|451991596:1-117              UUGUGGGAGAGUAAG.ACGUUGCCAGGU
+gi|662019925:1-117              GUGUGGGAGAGUAGG.UGGUUGCCAG--
+gi|507148469:1-115              UUGUGGGAAAGUAGG.UUGUCGCUGG--
+gb|CP002410.1|:c2758965-2758850 GUGUGGAAGAGUAGG.UCGUUGCCAG--
+gi|451991560:1-117              CUGUGGGAGAGUAGG.UCAUUGCCGGGU
+gb|M36157.1|CLORRAAF:1-116      CCCUGCGAGAGUAGG.ACGCUGCCGGGC
+gb|CP007739.1|:254201-254315    CCCUGCGAGAGUAGG.ACGUUGCCAG--
+gi|451991748:1-104              CCCUGCAAGAGUAGG.UC----------
+gi|452192278:1-116              CCCUGUGAGAGUAGG.ACGCCGCCAAGC
+gi|451991707:1-113              GCCUGCGAGAGUAGG.ACGUCGCCAAGC
+gi|485099279:1-115              CCCUGUGAGAGUAGG.ACGUCGCCAAGC
+gi|507148473:1-117              CCCUGCGAGAGUAGG.UCGUUGCUAGGC
+gi|451991966:1-107              CCCUGUGAGAGUAGG.ACGUCGC-----
+gi|452192317:1-116              CCCUGUGAAAGUAGG.ACGUUGCUGGGC
+gi|507148519:1-113              UCCUGGGAGAGUAGG.ACGUUGCCA---
+gb|CP010587.1|:c2342-2226       CCCUGUGAGAGUAGG.ACGUUGCCAGGC
+gi|451991759:1-116              CCCUGUGAGAGUAGG.ACGCCGCCAAGC
+gi|507148493:1-116              CCCUGCGAGAGUAGG.ACGUUGCCGGGC
+gi|451991606:1-115              CCCUGUGAGAGUAGG.ACGUCGCCAAG-
+gi|507148463:1-115              AGCCGGGAGAGUAGG.ACGUUGCCAG--
+gi|451991607:1-116              CCCUGUGAGAGUAGG.ACGUCGCCAAGC
+gb|EU723616.1|:258-373          CCCUGGGAGAGUAGG.ACGUCGCCAG--
+gi|452192408:1-113              UCCUGGGAAGGUAGG.UCGUUGCCA---
+gb|K03158.1|BACRBB:21-137       CCCUGUGAGAGUAGG.ACGCCGCCAAGC
+gi|507148585:1-114              CCGUGGGAGAGCAGG.ACGUCGCUGACC
+gi|45565:1-116                  CCCUGUGAGAGUAGG.ACGUCGCUGGGC
+gi|485099272:1-113              UUCCGCUAGAGUAGG.ACGUUGCCAG--
+gi|451991666:1-115              UUCCGCUAGAGUAGG.ACGUUGCCAGGC
+gi|451991767:1-113              UUCCGCUAGAGUAGG.ACGUUGCCAG--
+gi|662019936:1-111              UUCCGCUAGAGUAGG.ACGUUGCCA---
+gi|452192147:3-120              GUGUGGGAGAGUAGG.ACACCGCCGAAC
+gi|452192127:2-120              UUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gb|K02682.1|MLURRAA:1-119       UUGUGGGAGAGUAGG.UCGCCGCCGGAC
+gb|GU137314.1|:62-180           ACGUGGGAAGGUAGG.UGGCUGCCGGGU
+gi|451991676:1-116              UCGUGGGAGAGUAGG.UAGUCGCCAAAC
+gi|952974062:1784173-1784288    CAGUGGGAAAGUAGG.ACACUGCCGG--
+gi|451991788:3-118              ACAUGCGAAAGUAGG.UCACUGCCAGGC
+gi|451991797:1-113              CCAUGUGAAAGUAGG.UCACUGCCAG--
+gi|451991785:1-108              CUGCGGGAGAGUAGG.UCGUCGCCG---
+gi|451992028:1-106              CAGCGGGAGAGUAGG.UCGUCGCCG---
+gi|451991909:1-107              -CGCGGGAGAGUAGG.UCGUCGCCG---
+gi|451992024:1-105              ACGCGGGAGAGUAGG.UCGUCGCCG---
+gb|M33892.1|CHBRRAA:1-109       -UGCGGGAGAGUAGG.UCGUCGCCG---
+gi|451991809:1-115              GCGUGGGAGAGUAGG.UCGCCGCCAGGC
+gi|452192556:4-121              GCGUGGGAGAGUCGG.UCGCCGCCAGGC
+gi|46403:3-120                  GCGUGGGAGAGUAGG.UCGCCGCCAGGC
+gi|452192293:1-108              -UGUGGGAGAGUAGG.UCGUCGCCAGGC
+gb|CP000143.2|:5111-5227        ACGUGGGAGAGUAGG.UCGCCGCCAGAC
+gi|507148457:2-118              ACGUGGGAGAGUAGG.UCACCGCCAAAC
+gi|451991898:1-117              UCGUGCGAGAGUAGG.UCAUCGCCAGGC
+gb|CP011310.1|:c2714779-2714663 CACUGGAAGAGUAGG.UCGUCGCCAGGC
+gb|M35563.1|THTRR5SX:4-120      CCAUGUGAGAGUAGG.UCAACGCCAGGC
+gi|452192131:1-110              -CGUGGGAGAGUAUG.UCGCCGCCUUCU
+gi|452192334:1-106              -UGCGGGAGAGUAGG.UCGUCGCCAG--
+gi|452192400:1-109              -AGUGGGAGAGUAGG.UCACCGCCAACC
+gb|M33890.1|SPGRRAA:3-121       UUGUGGGAGAGUAAG.AAACCGCCGACA
+gi|452192304:1-110              AGGUGGGAGAGUAAG.UCGUUGCCA---
+gi|507148572:1-110              UCGUGGGAGAGUAGG.UCAUCGCCCGUU
+gi|452192451:1-109              -UGUGGGAGAGUAGA.UCGCCGCCUUUC
+gi|452192466:1-110              AGGUGGGAGAGUAGG.UCGGUGCCGA--
+gb|M33889.1|FBCRRAA:1-115       AGCCGGGAGAGUAGG.ACGUUGCCAG--
+gi|451991928:1-106              UUGUGGGAGAGUAUG.UCGUCGCCU---
+gi|507148549:1-108              AUGUGGGAGAGUAGG.UCGCUGCCA---
+gi|452192142:4-112              ACGUGGGAGAGUAGG.UCGGUGCC----
+gi|452192345:1-110              -GGUGGGAGAGUAGG.CCGCCGCCUUUU
+gi|452192241:1-112              CAGUGUGAAAGUAGG.UCAUCGUCAG--
+gi|451991789:2-116              GCACGGGAGAGUAAG.UCACUGCCA---
+gi|452192282:1-118              GCACGGGAAAGUAGG.UCGUCCCGGG--
+gi|452192181:1-114              CCAUGUGAAAGUAGG.UCAACGCCAGGC
+gi|452192237:1-113              GCGUGUGAAAGUAGG.ACAUCGUCAGGC
+gi|452192238:1-113              ACCUGGGAGAGUAGG.UCGCUGCCAGGC
+gb|M11540.1|TFERRATTH:2-116     GCCUGUGAAAGUAGG.UCAUCGUCAGAC
+gi|451991865:1-113              ACAUGUGAAAGUAGG.UCACCGCCAAGC
+gi|451991635:3-116              ACAUGUGAAAGUAGG.UCACCGCCAGGC
+gi|452192354:1-113              GCAUGUGAAAGUAGG.UUACCGCCAGGC
+gi|452192128:1-113              UGGUGGGAAAGUAGG.UCGUCGCCAG--
+gi|452192311:1-117              AUGUGGGAGAGUAGG.UCGCCGCCGAUU
+gi|662019911:1-115              AUGUGGGAAAGUAGG.UCGCCGCCGA--
+gi|451991895:1-113              UCGUGGGAAAGUAGG.CCGACGCCAG--
+gi|507148536:1-110              UAGUGGGAAAGUAGG.UCGCCGCA----
+gb|CP006585.1|:1257726-1257839  GUGUGGGAAAGUAGG.UCGCUGCCAG--
+gi|452192450:1-113              UCCUGGGAAAGUAGG.UCGCCGCCAG--
+gi|662019945:1-111              GUGUGGGAAAGUAGG.UCGCUGCCA---
+gi|34483186:c333378-333264      GUGUGGAAACGUAGG.UUGGUGCGGG--
+gb|JX424617.1|:c548-437         AUGCGGGAGAGUAGG.UAGCCGCCU---
+gi|452192268:1-115              GUCCGGGAGAGUAGG.UCGCCGCUGGAU
+gb|GU452708.1|:93-211           GCAUGGGAGGAUAGG.UGGCUGCCGGAU
+gi|451991800:1-101              CAGUGGAAGAGUAGG.UAG---------
+gi|451991799:1-102              -AGUGGGAGAGUAGG.UAG---------
+gi|452192505:1-102              UAGUGGGAGAGUAGG.UAGU--------
+gi|451991558:1-113              GUAUGGGAGAGUAGG.UCGUCGCCAA--
+gi|451991754:2-119              GCACGGGAGAGUAAG.UCGCUGCCAGGU
+gb|CP003398.1|:259645-259761    UCAUGGGAGAGUAAG.UCACUGCCAAGC
+gi|452192506:2-119              GCACGGGAGAGUAGG.UCGCUGCCACCC
+gi|507148510:1-115              CCAUGUGAGAGUAGG.UCACCGCCAAGC
+gi|45880:2-118                  CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gb|M16533.1|VIBRRABA:2-118      CCAUGUGAGAGUAGG.UCAUUUCCAGGC
+gi|662019975:1-113              CCAUGCGAGAGUAGG.ACACUGCCAGGC
+gi|38869:2-118                  CCAUGUGAGAGUAGG.ACACUGCCAGGC
+gi|451991756:2-118              CCAUGCGAGAGUAGG.ACACUGCCAGGC
+gi|451991660:2-118              CCAUGUGAGAGUAGG.GAACUGCCAAGC
+gi|675820153:120-237            CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|507148512:1-115              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|507148513:1-115              CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gi|485099266:1-116              CCAUGUGAGAGUAGG.GAACUGCCAGGC
+gi|451991968:1-116              CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|451991600:3-115              CCAUGUGAAAGUAGG.ACACCGCCA---
+gi|451991949:1-114              ACACGGGAGAGUAGG.UCGCUGCCAGGU
+gi|451991930:1-114              GCACGGGAGAGUAGG.UCGCCGCCAGGU
+gb|M11546.1|TFERRATA:3-119      GCACGGGAGAGUAGG.UCGCCGCCAGGU
+gi|451991638:1-115              GCCUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991657:1-115              GUCUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|526641878:3-117              CCAUGCGAAAGUAGG.UCACUGCCAAAC
+gi|389606634:c119374-119258     CCAUGCGAAAGUAGG.UCACUGCCAAAC
+gi|507148557:1-109              CCAUGCGAAAGUAGG.UCACUGCCA---
+gi|662019915:1-113              CCAUGCGAAAGUAGG.UCACUGCCAAAC
+gi|507148579:1-112              CCAUGUGAGAGUAGG.UCAUCGUCAGCA
+gb|CP007577.1|:3302973-3303092  CCAUGUGAGAGUAAG.UCAUCGCCAGCU
+gi|452192503:1-116              CCAUGUGAGAGUAAG.UCAUCGCCAGCU
+gb|M76577.1|GLURR5SA:3-120      GUGCGGAAAAGUCGG.UCGCCGCCAGGU
+gb|M76569.1|ABCRR5SA:3-119      CCACGGGAAAGUCGG.UCGCCGCCAGGU
+gb|S39188.1|:2-119              ACCUGGGAGAGUAGG.UCGUCGCCAGGC
+gi|452192385:1-116              CCAUGUGAAAGUAGG.UCAUCGCCAAGC
+gb|M34761.1|MAGRRAC:1-117       CCAUGUGAAAGUAGG.UCAUCGCMAAGN
+gi|451991619:1-116              CUGUGCGAAAGUAGG.GAACUGCCAGGC
+gb|M34762.1|MLCRRAB:1-117       CCAUGCGAAAGUAGG.GAAUUGCMAAAN
+gi|485099285:1-114              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gb|CP013949.1|:1046709-1046826  CCCUGGGAGAGUAGG.UCGCUGCCAGGC
+gi|451991914:2-119              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|451991913:2-119              ACGCGGGAGAGUAGG.UCGCUGCCAGGU
+gi|451991605:2-118              CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gb|DQ532441.1|:c9325-9209       CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gi|451991936:1-114              CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gb|ANOR01000024.1|:5607-5723    CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gi|4468164:2-115                CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|48257:4-119                  CGCUGGGAGAGUAGG.UCGGUGCGGGGG
+gi|224510780:2-119              GCCUGGGAGAGUAGG.UCGGUGCGGGGG
+gi|451991880:1-115              ACGUGGGAGAGUAGG.UCACCGCCAGAC
+gi|662019950:1-114              ACGUGGGAGAGUAGG.UCACCGCCAGAC
+gb|CP009574.1|:c806523-806408   CCAGGUGAAAGUAGG.UAGUCGUCAGGA
+gb|M33886.1|CYTRRAB:1-116       CCCUGUGAGAGUAGG.ACGUUGCCAGGC
+gi|357428060:1522-1640          ACGUGGGAGAGUAGG.UCGCCGCCAGGU
+gi|356882082:c402625-402507     ACGUGGGAGAGUAGG.UCGCCGCCAGGU
+gb|CP012406.1|:664991-665109    ACGUGGGAGAGUAGG.UCGCCGCCAGGU
+gi|451991726:1-113              UUGUGGGAAAGUAGG.ACGCUGCCG---
+gi|452192559:1-115              ACCUGGGAGAGUAGG.UCGUCGCCAGGC
+gb|M35166.1|PLLS5RRNAB:1-109    --GUGCGAAAGUAGG.U-AUCGCCGGA-
+gb|CP011270.1|:4958369-4958477  AGGUGCGAAAGUAGG.UUAUUGCCGG--
+gb|M35170.1|GEM5SRRNA:1-108     --GCGCGAGAGUAGG.-UAUCGCCGGCC
+gi|452192403:1-110              ACUUGGAAAAGUAGG.UAGCCGCCA---
+gi|452192413:1-112              ACCUGGGAGAGUAGG.UCGCCGCCUUCU
+gb|M34775.1|ANCRRAA:1-116       ACCUGGGAGAGUAGG.UCGCUGCCAGGC
+gb|M35569.1|LTTRR5S:3-117       GCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|452192547:1-114              ACGCGGGAGAGUAGG.UCGUUGCCAGGU
+gi|40413:3-117                  GCGCGGGAGAGUAGG.UCGCCGCCAGG-
+gb|M35310.1|HESRRA:1-117        GCGCGGGAGAGUAGG.UCGCUGCCGGAU
+gb|M35568.1|VITRR5SXX:1-115     CCGUGUGAAAGUAGG.ACAUCGUCAGGC
+gi|451991653:1-112              UGGUGGGAGAGUAGG.ACGCCGCC----
+gi|861061:1-118                 CUGUGGGAGAGUAGG.ACGCCGCCAGCG
+gi|860904:1-116                 GCGCGGGAGAGUAGG.UCGCUGCCGGAU
+gi|507148422:2-119              GCGUGGGAGAGUAGG.UCGCUGCCGGAU
+gi|451991792:1-116              GCGCGGGAGAGUAGG.UCGCUGCCGGAU
+gi|452192399:1-117              GCGCGGGAGAGUAGG.UCGCUGCCGGAU
+gi|451991925:1-116              CCAUGUGAGAGUAGG.UCAUCGCCAAGC
+gi|47140:2-118                  CCAUGUGAGAGUAGG.UCAUUUCCAGGC
+gi|451991802:1-112              AUGUGGGAAAGUAGG.UCGCCGCC----
+gi|451992042:1-115              GGGUGGGAGAGUAGG.UCAUUGCCAG--
+gi|452192373:1-117              GUGUGGGAGAGUAGG.ACGCCGCCGGAC
+gi|451991686:3-118              ACGCGGGAGAGUAGG.UCGCUGCCAGGC
+gi|328801247:21-136             CCAUGUGAGAGUAGG.UCAUCGUCAAGA
+gb|KF901086.1|:6138-6252        GAGUGGGAAAAUAGG.UCACCGCCG---
+gi|688725010:c1243-1130         CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gb|AC167666.4|:1429-1542        CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|690018164:461-574            CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|451991889:1-113              CCGUGUGAAAGUAGG.UCAUCGUCAGGC
+gi|688799711:426-535            CCGUGGGAGAGCAGG.UCGUCGCUA---
+gi|307683286:c91863-91747       CUAUGGGAAAAUAGC.UCGGUGCCAGGA
+gi|452192203:1-116              CUCUGGGAGAGCUGAuUCGCCGCC----
+gi|765338145:1-113              GUGCGUGAAAGUAGG.UCAUCGUCAGAC
+gb|CP006885.2|:13738-13857      CUCUGGGAAACGCGGuUCGCCGCC----
+gi|689936939:3579-3693          GUGUGGGAGAGUAAG.ACGCUGCCG---
+gi|841942794:7818-7933          CCAUGCGAGAGUAGG.GAACUGCCAGGC
+gi|156148669:c114797-114685     ACGCGGGAGAGUAGG.UCGCUGCCA---
+gi|687058084:c326-216           AUGUGGGAGAGUAGG.AGGCCGCC----
+gi|687836183:c2166-2052         CCAUGCGAGAGUAGG.UCAUCGCCAGGG
+gi|49258838:3-122               CUCUGGGAAACCCGGuUCGCCGCC----
+gi|20609:4653-4769              UUUUGGGAAAGUAGC.UCAGUGCCAAGG
+gi|451991654:1-118              CUCUGGGAAAUCCGGuUCGCCGCC----
+gb|CP007060.1|:196416-196534    CUCUGGGAAAUUCGGuUCGCCGCC----
+gi|37927900:1-119               CUCUGGGAAACCCGGuUCGCCGCC----
+gi|526641914:1-118              CUCUGGGAAAUCCGGuUCGCCGCC----
+                                    *  *                    
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/result.selected	Sat Mar 11 16:59:55 2017 -0500
@@ -0,0 +1,19 @@
+CLUSTAL W (1.8) multiple sequence alignment
+
+
+AB001721-1-2735-2851          CCCGGUGACUAUAGAGAGAGGGCCACACCCGUUCCCAUCCCGAACACGGAAGUUAAGCCU
+gi-258590833-c1582130-1582011 CCUGGUGGCCAUAGCGGAGGGGAAACACCCGUUCCCAUUCCGAACACGGAAGUGAAGCCC
+gb-M29856-1-BTTDNA-1-115      UCUGGUGACCAUAGCGGAGGGGAUCCACCCGUUCCCAUCCCGAACACGGAAGUUAAGCCC
+gi-452192175-1-116            --CGGUGGUCAUAGCGGAGGGGACACACCCGUUCCCAUUCCGAACACGGAAGUUAAGCCC
+gb-AF116563-1--6176-6294      UUCGGUGGUUAUAGCGGUGGGGAAACACCCGGUCCCAUUCCGAACCCGGUAGUUAAGCCC
+gb-CP012370-1--152653-152770  UCUGGUGGUAAUAGCGGAGGGGAAACACCCGUUCCCAUCCCGAACACGGCAGUUAAGCCC
+                                                                                          
+
+AB001721-1-2735-2851          CUCAUCGCUGAUGGUACUAUGUGGUUCGCUGCAUGGGAGAGUAGGACGUUGCCGGGU
+gi-258590833-c1582130-1582011 UCCAGCGCCGAUGGUACUGCGUGGGCAACUGCGCGGGAGAGUAGGUCGCCGCCAGGA
+gb-M29856-1-BTTDNA-1-115      UCCAGCGCCGAUGGUACUUGGGGA--UGACCCCUGGGAGAGUAGGUCGUUGCCAGGC
+gi-452192175-1-116            UCCAGCGCCGAUGGUACUGCCCUGGCGACGGGGCGGGAGAGUAGGUCGCUGCCGGGG
+gb-AF116563-1--6176-6294      GCCAGCGCCGAUGGUACUGCACUGGUGACGGUGUGGGAGAGUAGGUCGCCGCCGGAC
+gb-CP012370-1--152653-152770  UCCAGCGCCGAUGGUACUGGGGAG--UAUUCCCCGGGAGAGUAGGACACCGCCAGGA
+                                                                                       
+