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comparison test-data/test4_de_novo.fasta @ 10:10b84b577117 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 7dca92baf6a91f10bced28b883f14d3f4d7630c5
author rnateam
date Sat, 21 Oct 2023 09:07:21 +0000
parents 65c38d020fea
children
comparison
equal deleted inserted replaced
9:eb35257d2e29 10:10b84b577117
1 >1p_error_2 reference=AY466476 amplicon=432..713 errors=76%G 1 >1p_error_2 reference=AY466476 amplicon=432..713 errors=76%G
2 GUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAGUUACUGGCGUAAAGGCGCGUAGCGGCCUGGAAGUUAGCGUGAAGCCCUGGCUCA 2 GUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAGUUACUGGCGUAAAGGCGCGUAGCGGCCUGGAAGUUAGCGUGAAGCCCUGGCUCA
3 >1p_error_3 reference=JN430627 amplicon=421..712 errors=1%C
4 CUGCCAGCAGCCGCGGUAACACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGCACGUAGGCGGCACGGUAAGCCUGGUGUGAAAGACCG
5 >1p_error_5 reference=FJ890890 amplicon=455..746 description="Bacteria;Cyanobacteria;Chloroplast 3 >1p_error_5 reference=FJ890890 amplicon=455..746 description="Bacteria;Cyanobacteria;Chloroplast
6 GUGCCAGCAGCCGCGGUAAGACAGAGGAUGCAAGCGUUAUCCGGAAUGAUUGGGCGUAAAGCGUCUGUAGGUUGUUUAAAAAGUAUUUUGUUAAAGAUUA 4 GUGCCAGCAGCCGCGGUAAGACAGAGGAUGCAAGCGUUAUCCGGAAUGAUUGGGCGUAAAGCGUCUGUAGGUUGUUUAAAAAGUAUUUUGUUAAAGAUUA
7 >1p_error_6 reference=JN449148 amplicon=487..779 errors=39%C
8 GUGCCAGCAGCCGCGGUAAUACGUAAGGGGCGAGCGUUCCUCGGAAUUACUGGGCGUAAAGGGCGUGUAGGUGGUCUUGCAAGUCGAUUGGUAAAAGACC
9 >1p_error_7 reference=EF019112 amplicon=467..758 errors=8%U,40%A 5 >1p_error_7 reference=EF019112 amplicon=467..758 errors=8%U,40%A
10 GUGCCAGUAGCCGCGGUAAGACGUAGGGGGCGAGCGUUAAUCGGAAUUAUUGGGCGUAAAGCGUGCGUAGGCGGAUUCGUAAGUCGGGGUUGAAAUAUCC 6 GUGCCAGUAGCCGCGGUAAGACGUAGGGGGCGAGCGUUAAUCGGAAUUAUUGGGCGUAAAGCGUGCGUAGGCGGAUUCGUAAGUCGGGGUUGAAAUAUCC
11 >1p_error_8 reference=EF020331 amplicon=491..782 errors=53+G 7 >1p_error_8 reference=EF020331 amplicon=491..782 errors=53+G
12 GUGCCAGCAGCCGCGGUAAUACGUAGGCAGCAAGCGUUGUUCGGAAUUACUGGGGCGUAAAGAGUGUGUAGGCGGUUUUCUAAGUUUGGUGUGAAAUCUCC 8 GUGCCAGCAGCCGCGGUAAUACGUAGGCAGCAAGCGUUGUUCGGAAUUACUGGGGCGUAAAGAGUGUGUAGGCGGUUUUCUAAGUUUGGUGUGAAAUCUCC
13 >1p_error_9 reference=FJ879628 amplicon=498..789 errors=18+C
14 GUGCCAGCAGCCGCGGUACAUACGUAGGGGGCAAGCGUUAUCCGGAUUUACUGGGUGUAAAGGGAGCGUAGGUGGCAGGGCAAGUCAGAUGUGAAAACCCG
15 >1p_error_10 reference=EU134170 amplicon=467..758 description="Bacteria;Chloroflexi;Anaerolineae;Anaerolineales;Anaerolineaceae;uncultured 9 >1p_error_10 reference=EU134170 amplicon=467..758 description="Bacteria;Chloroflexi;Anaerolineae;Anaerolineales;Anaerolineaceae;uncultured
16 GUGCCAGCAGCCGCGGUAAAACGUAGGAGGCGAGCGUUAUCCGGAUUUACUGGGCGUAAAGCGUGCGCAGGCGGUCCGACAGGUCGGGCGUGAAAUCUCC 10 GUGCCAGCAGCCGCGGUAAAACGUAGGAGGCGAGCGUUAUCCGGAUUUACUGGGCGUAAAGCGUGCGCAGGCGGUCCGACAGGUCGGGCGUGAAAUCUCC
17 >1p_error_11 reference=EU490280 amplicon=472..764 errors=63+U
18 GUGCCAGCAGCCGCGGUAAAACGUAGGGGGCUAGCGUUACCCGGAUUCACUGGGCGUAAAGCGUGGUGUAGGCGGUCCGGCAAGUCGGAUGUGAAAUCCCA
19 >1p_error_12 reference=FJ202663 amplicon=453..744 description="Bacteria;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Thalassospira
20 GUGCCAGCAGCCGCGGUAAUACGAAGGGAGCAAGCGUUGUUCGGAAUUACUGGGCGUAAAGGGCGUGUAGGCGGAUUAUCAAGUUAGGGGUGAAAUCCCG
21 >1p_error_13 reference=DQ522159 amplicon=503..793 errors=7+C 11 >1p_error_13 reference=DQ522159 amplicon=503..793 errors=7+C
22 GUGCCAGCCAGCCGCGGUAAUACAUAGGUUGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCAAGCGCAGGUUGGUUAUCAAGUCUAGUGUGAAAGGCAA 12 GUGCCAGCCAGCCGCGGUAAUACAUAGGUUGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCAAGCGCAGGUUGGUUAUCAAGUCUAGUGUGAAAGGCAA
23 >1p_error_14 reference=EU773708 amplicon=499..791 errors=58%U 13 >1p_error_14 reference=EU773708 amplicon=499..791 errors=58%U
24 GUGCCAGCAGCCGCGGUAAUACAGAGGUCUCAAGCGUUGUUCGGAAUCACUGGGCGUUAAGGGUACGUAGGCGGCCGCAUAAGUCGUGCGUGAAAGGCAG 14 GUGCCAGCAGCCGCGGUAAUACAGAGGUCUCAAGCGUUGUUCGGAAUCACUGGGCGUUAAGGGUACGUAGGCGGCCGCAUAAGUCGUGCGUGAAAGGCAG
25 >1p_error_15 reference=HM448227 amplicon=517..808 errors=59%U 15 >1p_error_15 reference=HM448227 amplicon=517..808 errors=59%U
26 GUGCCAGCAGCCGCGGUAAUACGUAGGUCCCGAGCGUUGCGCGAAUUCACUGGGCGUAUAGCGUCCGCAGCCGGACGGGUAAGCGGUGCGUCAAAGCCCA 16 GUGCCAGCAGCCGCGGUAAUACGUAGGUCCCGAGCGUUGCGCGAAUUCACUGGGCGUAUAGCGUCCGCAGCCGGACGGGUAAGCGGUGCGUCAAAGCCCA
27 >1p_error_16 reference=GQ139098 amplicon=511..802 errors=1%A 17 >1p_error_16 reference=GQ139098 amplicon=511..802 errors=1%A
28 AUGCCAGCAGCCGCGGUAACACGUAGGGGGCAAGCGUUGUUCGGAAUUAUUAGGCGUAAAGGGCAGGCAGGCGGACCUGCAAGUUUUCUGUUAAAGACGU 18 AUGCCAGCAGCCGCGGUAACACGUAGGGGGCAAGCGUUGUUCGGAAUUAUUAGGCGUAAAGGGCAGGCAGGCGGACCUGCAAGUUUUCUGUUAAAGACGU
29 >1p_error_17 reference=AB100473 amplicon=660..951 errors=57%C 19 >1p_error_17 reference=AB100473 amplicon=660..951 errors=57%C
30 GUGCCAGCAGCCGCGGUAAUACGUAGGGAGCAAGCGUUGUCCGGAUUUACUGGGUGCAAAGGGCGUGUAGGCGGGAAGGCAGGUCAGAUGUGAAAUCUAU 20 GUGCCAGCAGCCGCGGUAAUACGUAGGGAGCAAGCGUUGUCCGGAUUUACUGGGUGCAAAGGGCGUGUAGGCGGGAAGGCAGGUCAGAUGUGAAAUCUAU
31 >1p_error_18 reference=FJ802352 amplicon=495..786 errors=16%A
32 GUGCCAGCAGCCGCGAUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGCGCGCGUAGGCGGCUUUCUAAGUCAGGGGUGAAAUCCCG
33 >1p_error_19 reference=GQ138466 amplicon=520..812 description="Bacteria;Firmicutes;Clostridia;Clostridiales;uncultured 21 >1p_error_19 reference=GQ138466 amplicon=520..812 description="Bacteria;Firmicutes;Clostridia;Clostridiales;uncultured
34 GUGCCAGCAGCCGCGGUAAUACGUAGGGGGCGAGCGUUGUCCGGAAUGACUGGGCGUAAAGGGUGUGUAGGCGGUUUAGCAAGUUAGAUGUGAAAUACCC 22 GUGCCAGCAGCCGCGGUAAUACGUAGGGGGCGAGCGUUGUCCGGAAUGACUGGGCGUAAAGGGUGUGUAGGCGGUUUAGCAAGUUAGAUGUGAAAUACCC
35 >1p_error_20 reference=EU857742 amplicon=514..805 errors=18%G 23 >1p_error_20 reference=EU857742 amplicon=514..805 errors=18%G
36 GUGCCAGCAGCCGCGGUGAUACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGUACGUAGGCGGAUUAACAGGCAUUAAGAUAAAGCCAA 24 GUGCCAGCAGCCGCGGUGAUACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGUACGUAGGCGGAUUAACAGGCAUUAAGAUAAAGCCAA
37 >1p_error_21 reference=HQ588409 amplicon=540..831 errors=90%G
38 GUGCCAGCAGCCGCGGUAAUACAUAGGGGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGUAUGUAGGCGGUUUAUUAAGUCGGUAGGUGAAAGGCU
39 >1p_error_22 reference=EU488153 amplicon=481..771 errors=96%C 25 >1p_error_22 reference=EU488153 amplicon=481..771 errors=96%C
40 GUGCCAGCAGCCGCGGUAACACAUAGAGGACGAGCGUUAUCCGGAUUUACUGGGCGUAAAGAGCGUUGAGGCGGUUCCGUAAGUUGGGCGUUAAACCUCC 26 GUGCCAGCAGCCGCGGUAACACAUAGAGGACGAGCGUUAUCCGGAUUUACUGGGCGUAAAGAGCGUUGAGGCGGUUCCGUAAGUUGGGCGUUAAACCUCC