--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test4_input.fasta	Sun Sep 24 14:28:47 2017 -0400
@@ -0,0 +1,44 @@
+>1p_error_1 reference=AY697866 amplicon=489..787 errors=14-,19%C
+GUGCCAGCAGCCGGGUACUACGGAGGAUGCAAGCGUUAUCCGGAUUUAUUUGGGUUUAAAGGGUCCGUAGGCGGUAUUUUAAGUCAGAGGUGAAAGCCU
+>1p_error_2 reference=AY466476 amplicon=432..713 errors=76%G
+GUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAGUUACUGGCGUAAAGGCGCGUAGCGGCCUGGAAGUUAGCGUGAAGCCCUGGCUCA
+>1p_error_3 reference=JN430627 amplicon=421..712 errors=1%C
+CUGCCAGCAGCCGCGGUAACACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGCACGUAGGCGGCACGGUAAGCCUGGUGUGAAAGACCG
+>1p_error_4 reference=GU812306 amplicon=598..880 errors=95%G
+GUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGUUUUUUAAGUCUGAUGUGAAGGCCCU
+>1p_error_5 reference=FJ890890 amplicon=455..746 description="Bacteria;Cyanobacteria;Chloroplast
+GUGCCAGCAGCCGCGGUAAGACAGAGGAUGCAAGCGUUAUCCGGAAUGAUUGGGCGUAAAGCGUCUGUAGGUUGUUUAAAAAGUAUUUUGUUAAAGAUUA
+>1p_error_6 reference=JN449148 amplicon=487..779 errors=39%C
+GUGCCAGCAGCCGCGGUAAUACGUAAGGGGCGAGCGUUCCUCGGAAUUACUGGGCGUAAAGGGCGUGUAGGUGGUCUUGCAAGUCGAUUGGUAAAAGACC
+>1p_error_7 reference=EF019112 amplicon=467..758 errors=8%U,40%A
+GUGCCAGUAGCCGCGGUAAGACGUAGGGGGCGAGCGUUAAUCGGAAUUAUUGGGCGUAAAGCGUGCGUAGGCGGAUUCGUAAGUCGGGGUUGAAAUAUCC
+>1p_error_8 reference=EF020331 amplicon=491..782 errors=53+G
+GUGCCAGCAGCCGCGGUAAUACGUAGGCAGCAAGCGUUGUUCGGAAUUACUGGGGCGUAAAGAGUGUGUAGGCGGUUUUCUAAGUUUGGUGUGAAAUCUCC
+>1p_error_9 reference=FJ879628 amplicon=498..789 errors=18+C
+GUGCCAGCAGCCGCGGUACAUACGUAGGGGGCAAGCGUUAUCCGGAUUUACUGGGUGUAAAGGGAGCGUAGGUGGCAGGGCAAGUCAGAUGUGAAAACCCG
+>1p_error_10 reference=EU134170 amplicon=467..758 description="Bacteria;Chloroflexi;Anaerolineae;Anaerolineales;Anaerolineaceae;uncultured
+GUGCCAGCAGCCGCGGUAAAACGUAGGAGGCGAGCGUUAUCCGGAUUUACUGGGCGUAAAGCGUGCGCAGGCGGUCCGACAGGUCGGGCGUGAAAUCUCC
+>1p_error_11 reference=EU490280 amplicon=472..764 errors=63+U
+GUGCCAGCAGCCGCGGUAAAACGUAGGGGGCUAGCGUUACCCGGAUUCACUGGGCGUAAAGCGUGGUGUAGGCGGUCCGGCAAGUCGGAUGUGAAAUCCCA
+>1p_error_12 reference=FJ202663 amplicon=453..744 description="Bacteria;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Thalassospira
+GUGCCAGCAGCCGCGGUAAUACGAAGGGAGCAAGCGUUGUUCGGAAUUACUGGGCGUAAAGGGCGUGUAGGCGGAUUAUCAAGUUAGGGGUGAAAUCCCG
+>1p_error_13 reference=DQ522159 amplicon=503..793 errors=7+C
+GUGCCAGCCAGCCGCGGUAAUACAUAGGUUGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCAAGCGCAGGUUGGUUAUCAAGUCUAGUGUGAAAGGCAA
+>1p_error_14 reference=EU773708 amplicon=499..791 errors=58%U
+GUGCCAGCAGCCGCGGUAAUACAGAGGUCUCAAGCGUUGUUCGGAAUCACUGGGCGUUAAGGGUACGUAGGCGGCCGCAUAAGUCGUGCGUGAAAGGCAG
+>1p_error_15 reference=HM448227 amplicon=517..808 errors=59%U
+GUGCCAGCAGCCGCGGUAAUACGUAGGUCCCGAGCGUUGCGCGAAUUCACUGGGCGUAUAGCGUCCGCAGCCGGACGGGUAAGCGGUGCGUCAAAGCCCA
+>1p_error_16 reference=GQ139098 amplicon=511..802 errors=1%A
+AUGCCAGCAGCCGCGGUAACACGUAGGGGGCAAGCGUUGUUCGGAAUUAUUAGGCGUAAAGGGCAGGCAGGCGGACCUGCAAGUUUUCUGUUAAAGACGU
+>1p_error_17 reference=AB100473 amplicon=660..951 errors=57%C
+GUGCCAGCAGCCGCGGUAAUACGUAGGGAGCAAGCGUUGUCCGGAUUUACUGGGUGCAAAGGGCGUGUAGGCGGGAAGGCAGGUCAGAUGUGAAAUCUAU
+>1p_error_18 reference=FJ802352 amplicon=495..786 errors=16%A
+GUGCCAGCAGCCGCGAUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGCGCGCGUAGGCGGCUUUCUAAGUCAGGGGUGAAAUCCCG
+>1p_error_19 reference=GQ138466 amplicon=520..812 description="Bacteria;Firmicutes;Clostridia;Clostridiales;uncultured
+GUGCCAGCAGCCGCGGUAAUACGUAGGGGGCGAGCGUUGUCCGGAAUGACUGGGCGUAAAGGGUGUGUAGGCGGUUUAGCAAGUUAGAUGUGAAAUACCC
+>1p_error_20 reference=EU857742 amplicon=514..805 errors=18%G
+GUGCCAGCAGCCGCGGUGAUACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGUACGUAGGCGGAUUAACAGGCAUUAAGAUAAAGCCAA
+>1p_error_21 reference=HQ588409 amplicon=540..831 errors=90%G
+GUGCCAGCAGCCGCGGUAAUACAUAGGGGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGUAUGUAGGCGGUUUAUUAAGUCGGUAGGUGAAAGGCU
+>1p_error_22 reference=EU488153 amplicon=481..771 errors=96%C
+GUGCCAGCAGCCGCGGUAACACAUAGAGGACGAGCGUUAUCCGGAUUUACUGGGCGUAAAGAGCGUUGAGGCGGUUCCGUAAGUUGGGCGUUAAACCUCC