Mercurial > repos > rnateam > splitfasta

comparison splitFasta.py @ 5:733ca84b21ee draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta commit 31945d5d8c5ebee64ebf29c6ea022fb831f47274"
author rnateam
date Mon, 21 Sep 2020 15:40:14 +0000
parents ae4d5733272f
children
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4:ae4d5733272f 5:733ca84b21ee
1 #!/usr/bin/env python
2 import os
3 import sys
4 from Bio import SeqIO
5
6 if __name__ == "__main__":
7 inpath = sys.argv[1]
8 os.mkdir('splits')
9 with open(inpath, 'r') as handle:
10 for record in SeqIO.parse(handle, 'fasta'):
11 header = os.path.join('splits', record.id + '.fasta')
12 with open(header, 'w') as handle2:
13 SeqIO.write([record], handle2, 'fasta')