Mercurial > repos > rnateam > splitfasta

diff splitFasta.xml @ 6:7521d865e770 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta commit 49709e680f90372edd2b8a2715d95e5949641afa
author bgruening
date Tue, 14 Jan 2025 21:52:36 +0000
parents 733ca84b21ee
children
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--- a/splitFasta.xml	Mon Sep 21 15:40:14 2020 +0000
+++ b/splitFasta.xml	Tue Jan 14 21:52:36 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="rbc_splitfasta" name="Split Fasta" version="0.4.0">
+<tool id="rbc_splitfasta" name="Split Fasta" version="0.5.0" profile="23.0">
     <description>files into a collection</description>
     <requirements>
         <requirement type="package" version="1.76">biopython</requirement>
@@ -6,9 +6,9 @@
     <command detect_errors="aggressive">
     <![CDATA[
         #if $splitmode.splitmode_select == "each":
-            python $__tool_directory__/split_fasta.py '$inputFile'
+            python $__tool_directory__/split_fasta.py --records '$inputFile.metadata.sequences' --limit "\${GALAXY_FILE_LIMIT:-0}" '$inputFile'
         #else if $splitmode.splitmode_select == "chunks":
-            python $__tool_directory__/split_fasta.py '$inputFile' $splitmode.num_chunks
+            python $__tool_directory__/split_fasta.py --records '$inputFile.metadata.sequences' --limit "\${GALAXY_FILE_LIMIT:-0}" --num-chunks '$splitmode.num_chunks' '$inputFile'
         #end if
     ]]></command>
     <inputs>