Mercurial > repos > rnateam > splitfasta
view splitfasta.xml @ 3:7439ffbd8943 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 9ffd40a178fb3aa8fff618f95d8b3fd7bf58240d
author | rnateam |
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date | Wed, 08 Jul 2015 06:23:46 -0400 |
parents | a9803f1fff75 |
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<tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0"> <requirements> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command interpreter="python"> <![CDATA[ splitFasta.py $inputFile ]]></command> <inputs> <param name="inputFile" type="data" format="fasta" label="Fasta file to split"/> <param name="outputFormat" type="select" label="Output Format"> <option value="separate">Separate History Items</option> <option value="collection">Create dataset collection</option> </param> </inputs> <outputs> <collection type="list"> <filter>outputFormat == 'collection'</filter> <discover_datasets pattern="(?P<designation>.*)" directory="splits" ext="fasta" visible="false"/> </collection> <data name="output"> <filter>outputFormat == 'separate'</filter> <discover_datasets pattern="(?P<designation>.*)" directory="splits" ext="fasta" visible="true"/> </data> </outputs> <help><![CDATA[ Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection. ]]></help> <citations> <citation type="bibtex"> @ARTICLE{bgruening_galaxytools, Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche}, keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna}, title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}}, url = {https://github.com/bgruening/galaxytools} } </citation> </citations> </tool>