Mercurial > repos > rnateam > splitfasta
view splitFasta.xml @ 4:ae4d5733272f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta commit 03f3cc2000e6ce876a3cb44c55c3fe878a2e7ce3-dirty
author | rnateam |
---|---|
date | Fri, 16 Oct 2015 16:13:34 -0400 |
parents | |
children | 733ca84b21ee |
line wrap: on
line source
<tool id="rbc_splitfasta" name="Split Fasta" version="0.2.0"> <description>files into a collection</description> <requirements> <requirement type="package" version="1.65">biopython</requirement> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command interpreter="python"> <![CDATA[ splitFasta.py $inputFile ]]></command> <inputs> <param name="inputFile" type="data" format="fasta" label="Fasta file to split"/> </inputs> <outputs> <collection name="splitted_fasta" type="list" label="Sequence collection in FASTA format"> <discover_datasets pattern="(?P<designation>.*)" directory="splits" ext="fasta" visible="false"/> </collection> </outputs> <tests> <test> <param name="inputFile" value="test.fasta" /> <output_collection name="splitted_fasta"> <element name="ID1.fasta" file="ID1_result1.fasta" ftype="fasta" /> <element name="ID2.fasta" file="ID2_result1.fasta" ftype="fasta" /> <element name="ID3.fasta" file="ID3_result1.fasta" ftype="fasta" /> </output_collection> </test> </tests> <help><![CDATA[ Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection. ]]></help> <citations> <citation type="bibtex"> @ARTICLE{bgruening_galaxytools, Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche}, keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna}, title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}}, url = {https://github.com/bgruening/galaxytools} } </citation> </citations> </tool>