Mercurial > repos > rnateam > sshmm

comparison test-data/test_shapes_final_model.xml @ 0:4b01f0d7b350 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sshmm/ commit b578a90031fd7061fbdaef48b6a66d895ac077c3
author rnateam
date Fri, 06 Jul 2018 09:01:40 -0400
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-1:000000000000 0:4b01f0d7b350
1 <?xml version="1.0" encoding="ISO-8859-1"?>
2 <!DOCTYPE mixture PUBLIC "-//ghmm.org//DOCUMENT ghmm V1.0//EN" "http://ghmm.sourceforge.net/xml/1.0/ghmm.dtd">
3 <mixture version="1.0" noComponents="1">
4 <HMM name="stateHMM" type="labeled discrete">
5 <alphabet id="0">
6 <symbol code="0">A</symbol>
7 <symbol code="1">C</symbol>
8 <symbol code="2">G</symbol>
9 <symbol code="3">T</symbol>
10 <symbol code="4">+</symbol>
11 <symbol code="5">#</symbol>
12 </alphabet>
13 <classAlphabet>
14 <symbol code="0">St</symbol>
15 <symbol code="1">E1</symbol>
16 <symbol code="2">I1</symbol>
17 <symbol code="3">S1</symbol>
18 <symbol code="4">H1</symbol>
19 <symbol code="5">M1</symbol>
20 <symbol code="6">E2</symbol>
21 <symbol code="7">I2</symbol>
22 <symbol code="8">S2</symbol>
23 <symbol code="9">H2</symbol>
24 <symbol code="10">M2</symbol>
25 <symbol code="11">E3</symbol>
26 <symbol code="12">I3</symbol>
27 <symbol code="13">S3</symbol>
28 <symbol code="14">H3</symbol>
29 <symbol code="15">M3</symbol>
30 <symbol code="16">E4</symbol>
31 <symbol code="17">I4</symbol>
32 <symbol code="18">S4</symbol>
33 <symbol code="19">H4</symbol>
34 <symbol code="20">M4</symbol>
35 <symbol code="21">E5</symbol>
36 <symbol code="22">I5</symbol>
37 <symbol code="23">S5</symbol>
38 <symbol code="24">H5</symbol>
39 <symbol code="25">M5</symbol>
40 <symbol code="26">E6</symbol>
41 <symbol code="27">I6</symbol>
42 <symbol code="28">S6</symbol>
43 <symbol code="29">H6</symbol>
44 <symbol code="30">M6</symbol>
45 <symbol code="31">En</symbol>
46 </classAlphabet>
47 <state id="0" initial="1.00000000">
48 <discrete id="0">0, 0, 0, 0, 1, 0</discrete>
49 <class>0</class>
50 </state>
51 <state id="1" initial="0.00000000">
52 <discrete id="0">0.33333333, 0.16666667, 0.33333333, 0.16666667, 0, 0</discrete>
53 <class>1</class>
54 </state>
55 <state id="2" initial="0.00000000">
56 <discrete id="0">0.25, 0.25, 0.25, 0.25, 0, 0</discrete>
57 <class>2</class>
58 </state>
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61 <class>3</class>
62 </state>
63 <state id="4" initial="0.00000000">
64 <discrete id="0">0.5625, 0.1875, 0.1875, 0.0625, 0, 0</discrete>
65 <class>4</class>
66 </state>
67 <state id="5" initial="0.00000000">
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69 <class>5</class>
70 </state>
71 <state id="6" initial="0.00000000">
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73 <class>6</class>
74 </state>
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81 <class>8</class>
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85 <class>9</class>
86 </state>
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94 </state>
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584 </mixture>