diff test-data/Anolis_caro_chrUn_GL343590.trna2_AlaAGC_dp.ps @ 8:bdb786715d28 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
author rnateam
date Wed, 20 Dec 2017 08:34:54 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Anolis_caro_chrUn_GL343590.trna2_AlaAGC_dp.ps	Wed Dec 20 08:34:54 2017 -0500
@@ -0,0 +1,507 @@
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