# HG changeset patch
# User rnateam
# Date 1500357019 14400
# Node ID 3ca6840623c6459e4b0d5ad70e028f0cb6b34cc1
# Parent  402d9a27818142a9b7c8c99dd8a058a61752672b
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 746497a64b955f6b9afc1944d1c1d8d877e53267

diff -r 402d9a278181 -r 3ca6840623c6 test-data/rnaalifold_input1.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaalifold_input1.fa	Tue Jul 18 01:50:19 2017 -0400
@@ -0,0 +1,4 @@
+>Anolis_carolinensis_chrUn_GL34
+TGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTAGTGGGATCGATGCCCACATTCTCCA
+>Anolis_carolinensis_chrUn_GL35
+GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATTGATGCCCGCATTCTCCA
diff -r 402d9a278181 -r 3ca6840623c6 test-data/rnaalifold_input1.stk
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaalifold_input1.stk	Tue Jul 18 01:50:19 2017 -0400
@@ -0,0 +1,5 @@
+# STOCKHOLM 1.0
+#=GF SQ 2
+Anolis_carolinensis_chrUn_GL34 TGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTAGTGGGATCGATGCCCACATTCTCCA
+Anolis_carolinensis_chrUn_GL35 GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATTGATGCCCGCATTCTCCA
+//
diff -r 402d9a278181 -r 3ca6840623c6 test-data/rnaalifold_result_MEA.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaalifold_result_MEA.txt	Tue Jul 18 01:50:19 2017 -0400
@@ -0,0 +1,6 @@
+GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCACAUUCUCCA
+(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). (-26.45 = -26.20 +  -0.25)
+(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). [-26.77]
+(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). {-26.45 = -26.20 +  -0.25 d=1.28}
+(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). {-26.45 = -26.20 +  -0.25 MEA=70.93}
+ frequency of mfe structure in ensemble 0.773705; ensemble diversity 2.40  
diff -r 402d9a278181 -r 3ca6840623c6 test-data/rnaalifold_resultfa.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaalifold_resultfa.txt	Tue Jul 18 01:50:19 2017 -0400
@@ -0,0 +1,2 @@
+GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCACAUUCUCCA
+(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). (-26.45 = -26.20 +  -0.25)
diff -r 402d9a278181 -r 3ca6840623c6 test-data/rnaalifold_resultstk.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaalifold_resultstk.txt	Tue Jul 18 01:50:19 2017 -0400
@@ -0,0 +1,2 @@
+GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCACAUUCUCCA
+(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). (-26.45 = -26.20 +  -0.25)