Mercurial > repos > rnateam > viennarna_rnapkplex

annotate test-data/rnaplfold_result1.ps @ 5:7807c35385c6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d9f13fd859165e4280412ec73f8f3f8b258d351d-dirty
author rnateam
date Thu, 28 Sep 2017 16:22:22 -0400
parents 289f7e5b3d51
children
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289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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1 %!PS-Adobe-3.0 EPSF-3.0
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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2 %%Title: RNA Dot Plot
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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3 %%Creator: ViennaRNA-2.2.10
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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4 %%CreationDate: Tue Oct 4 14:45:55 2016
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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5 %%BoundingBox: 66 530 520 650
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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6 %%DocumentFonts: Helvetica
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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7 %%Pages: 1
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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8 %%EndComments
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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9
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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10 %Options:
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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11 %This file contains the square roots of the base pair probabilities in the form
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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12 % i j sqrt(p(i,j)) ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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14 %%BeginProlog
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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15 /DPdict 100 dict def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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16 DPdict begin
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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17 /logscale false def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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18 /lpmin 1e-05 log def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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20 /box { %size x y box - draws box centered on x,y
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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21 2 index 0.5 mul sub % x -= 0.5
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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22 exch 2 index 0.5 mul sub exch % y -= 0.5
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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23 3 -1 roll dup rectfill
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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24 } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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25
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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26 /ubox {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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27 logscale {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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28 log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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29 } if
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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30 3 1 roll
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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31 exch len exch sub 1 add box
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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32 } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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33
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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34 /lbox {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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35 3 1 roll
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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36 len exch sub 1 add box
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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37 } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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38
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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39 /drawseq {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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40 % print sequence along all 4 sides
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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41 [ [0.7 -0.3 0 ]
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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42 [0.7 0.7 len add 0]
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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43 [-0.3 len sub -0.4 -90]
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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44 [-0.3 len sub 0.7 len add -90]
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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45 ] {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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46 gsave
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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47 aload pop rotate translate
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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48 0 1 len 1 sub {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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49 dup 0 moveto
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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50 sequence exch 1 getinterval
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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51 show
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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52 } for
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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53 grestore
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54 } forall
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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55 } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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56
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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57 /drawgrid{
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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58 0.01 setlinewidth
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59 len log 0.9 sub cvi 10 exch exp % grid spacing
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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60 dup 1 gt {
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61 dup dup 20 div dup 2 array astore exch 40 div setdash
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62 } { [0.3 0.7] 0.1 setdash } ifelse
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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63 0 exch len {
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64 dup dup
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65 0 moveto
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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66 len lineto
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67 dup
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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68 len exch sub 0 exch moveto
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69 len exch len exch sub lineto
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70 stroke
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71 } for
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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72 [] 0 setdash
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73 0.04 setlinewidth
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74 currentdict /cutpoint known {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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75 cutpoint 1 sub
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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76 dup dup -1 moveto len 1 add lineto
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77 len exch sub dup
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78 -1 exch moveto len 1 add exch lineto
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79 stroke
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80 } if
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81 0.5 neg dup translate
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82 } bind def
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83
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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84 end
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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85 %%EndProlog
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
86 DPdict begin
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
87 %delete next line to get rid of title
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
88 270 665 moveto /Helvetica findfont 14 scalefont setfont (Anolis_carolinensis_chrUn_GL343590.trna2-A) show
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
89
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
90 /sequence { (\
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
91 UGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUAGUGGGAUCGAUGCCCACAUUCUCCA\
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
92 ) } def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
93 /winSize 70 def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
94 /len { sequence length } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
95
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
96 292 416 translate
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
97 72 6 mul len 1 add winSize add 2 sqrt mul div dup scale
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
98 /Helvetica findfont 0.95 scalefont setfont
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
99
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
100 /drawseq_turn {% print sequence at bottom
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
101 gsave
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
102 len 2 sqrt div dup neg 0.28 add exch 0.78 sub translate
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
103 0 1 len 1 sub {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
104 dup dup 2 sqrt mul 0 moveto
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
105 sequence exch 1 getinterval
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
106 show
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
107 } for
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
108 grestore
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
109 } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
110 /drawgrid_turn{
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
111 0.01 setlinewidth
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
112 len log 0.9 sub cvi 10 exch exp % grid spacing
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
113 dup 1 gt {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
114 dup dup 20 div dup 2 array astore exch 40 div setdash
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
115 } { [0.3 0.7] 0.1 setdash } ifelse
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
116 0 exch len { %for (0, gridspacing, len)
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
117 dup dup %duplicate what - gridspacing??
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
118 dup len exch sub moveto %moveto diagonal?
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
119 dup winSize gt
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
120 {dup dup len exch sub winSize add lineto}
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
121 {dup len lineto}ifelse
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
122 dup len exch sub moveto %moveto diagonal?
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
123 dup len winSize sub le
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
124 {dup dup len exch sub dup winSize exch sub len add exch lineto}
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
125 {dup dup len exch sub len exch lineto}ifelse stroke pop pop
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
126 } for
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
127 len log 0.9 sub cvi 10 exch exp % grid spacing
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
128 dup 1 gt {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
129 dup dup 20 div dup 2 array astore exch 40 div setdash
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
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diff changeset
130 } { [0.3 0.7] 0.1 setdash } ifelse
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
131 0 exch len { %for (0, gridspacing, len)
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
132 dup dup %duplicate what - gridspacing??
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
133 dup len exch sub moveto %moveto diagonal?
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
134 len exch sub 0.7 sub exch 0.7 sub exch lineto
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
135 stroke
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
136 }for
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
137 winSize len moveto len winSize lineto stroke
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
138 [] 0 setdash
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
139 0.04 setlinewidth
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
140 currentdict /cutpoint known {
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
141 cutpoint 1 sub
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
142 dup dup -1 moveto len 1 add lineto
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
143 len exch sub dup
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
144 -1 exch moveto len 1 add exch lineto
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
145 stroke
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
146 } if
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
147 0.5 neg dup translate
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
148 } bind def
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
149
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
150 0.5 dup translate
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
151 drawseq_turn
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
152 45 rotate
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
153
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
154
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
155 %draw the grid
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
156 drawgrid_turn
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
157
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
158 %start of base pair probability data
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
159 2 70 0.1568 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
160 2 71 0.9619 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
161 3 69 0.1395 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
162 3 70 0.7414 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
163 3 72 0.8060 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
164 4 68 0.1157 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
165 4 69 0.6748 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
166 4 71 0.4682 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
167 5 67 0.1065 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
168 5 68 0.6724 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
169 5 70 0.3765 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
rnateam
parents:
diff changeset
170 6 47 0.1250 ubox
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171 6 67 0.6497 ubox
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172 7 46 0.1273 ubox
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173 7 66 0.6008 ubox
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174 8 45 0.1294 ubox
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175 8 48 0.2252 ubox
289f7e5b3d51 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
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176 9 47 0.2335 ubox
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177 10 25 0.7863 ubox
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178 11 24 0.7884 ubox
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179 11 43 0.5215 ubox
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180 11 45 0.2330 ubox
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181 12 23 0.7883 ubox
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182 12 42 0.5493 ubox
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183 12 44 0.2317 ubox
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184 13 22 0.7882 ubox
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185 13 41 0.5528 ubox
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186 13 43 0.2306 ubox
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187 14 40 0.5338 ubox
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188 15 20 0.1027 ubox
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189 16 38 0.5325 ubox
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190 16 40 0.1646 ubox
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191 17 37 0.5639 ubox
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192 17 39 0.1633 ubox
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193 18 36 0.5591 ubox
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194 18 38 0.1125 ubox
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195 19 36 0.2406 ubox
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196 20 34 0.5341 ubox
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197 20 35 0.2514 ubox
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198 21 33 0.4064 ubox
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199 22 32 0.2491 ubox
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200 22 33 0.4413 ubox
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201 23 32 0.5541 ubox
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202 24 31 0.6100 ubox
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203 25 30 0.6092 ubox
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204 26 36 0.2144 ubox
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205 27 35 0.2146 ubox
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206 27 43 0.7269 ubox
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207 28 34 0.2043 ubox
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208 28 42 0.7445 ubox
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209 29 41 0.7467 ubox
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210 30 40 0.7468 ubox
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211 31 39 0.7470 ubox
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212 38 73 0.3242 ubox
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213 39 72 0.3055 ubox
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214 40 73 0.1211 ubox
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215 41 71 0.2953 ubox
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216 41 72 0.1146 ubox
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217 42 70 0.2588 ubox
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218 43 69 0.2613 ubox
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219 43 71 0.2848 ubox
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220 44 68 0.2587 ubox
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221 44 70 0.3418 ubox
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222 45 67 0.2339 ubox
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223 45 68 0.1772 ubox
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224 45 69 0.3617 ubox
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225 45 70 0.1014 ubox
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226 45 72 0.3111 ubox
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228 46 68 0.3039 ubox
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229 46 69 0.1150 ubox
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230 46 71 0.2540 ubox
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232 48 67 0.1378 ubox
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235 51 63 0.9980 ubox
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237 53 61 0.9963 ubox
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239 55 60 0.1625 ubox
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240 showpage
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241 end
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242 %%EOF