annotate gbk_to_fasta.xml @ 5:b6786c2247b1 draft

Uploaded
author rreumerman
date Fri, 05 Apr 2013 05:05:30 -0400
parents bd5692103d5b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
1 <tool id="gbk2fasta" name="Genbank-to-Fasta">
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
2
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
3 <description>produces a Fasta file from a genbank file</description>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
4
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
5 <command interpreter="python">gbk_to_fasta.py $input $output</command>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
6
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
7 <inputs>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
8
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
9 <param name="input" type="data" format="text" label="Genbank file" />
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
10
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
11 </inputs>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
12
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
13 <outputs>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
14
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
15 <data name="output" format="fasta" label="${tool.name} on ${on_string}: converted Genbank file" />
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
16
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
17 </outputs>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
18
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
19 <help>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
20
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
21 This tool produces a fasta file from a genbank file containing a sequence.
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
22
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
23 </help>
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
24
bd5692103d5b Uploaded
rreumerman
parents:
diff changeset
25 </tool>