Mercurial > repos > ryanmorin > nextgen_variant_identification

comparison SNV/SNVMix2_source/SNVMix2-v0.12.1-rc1/samtools-0.1.6/Makefile.mingw @ 0:74f5ea818cea

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author ryanmorin
date Wed, 12 Oct 2011 19:50:38 -0400
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-1:000000000000 0:74f5ea818cea
1 CC= gcc.exe
2 AR= ar.exe
3 CFLAGS= -g -Wall -O2
4 DFLAGS= -D_FILE_OFFSET_BITS=64 -D_CURSES_LIB=2 -D_USE_KNETFILE
5 LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
6 bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o bam_sort.o \
7 knetfile.o
8 AOBJS= bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o \
9 bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
10 bamtk.o
11 PROG= samtools
12 INCLUDES= -Iwin32
13 SUBDIRS= .
14 LIBPATH=
15
16 .SUFFIXES:.c .o
17
18 .c.o:
19 $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
20
21 all:$(PROG)
22
23 lib:libbam.a
24
25 libbam.a:$(LOBJS)
26 $(AR) -cru $@ $(LOBJS)
27
28 samtools:lib $(AOBJS)
29 $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LIBPATH) -lm -L. -lbam -Lwin32 -lz -lcurses -lws2_32
30
31 razip:razip.o razf.o
32 $(CC) $(CFLAGS) -o $@ razf.o razip.o -lz
33
34 bgzip:bgzip.o bgzf.o
35 $(CC) $(CFLAGS) -o $@ bgzf.o bgzip.o -lz
36
37 razip.o:razf.h
38 bam.o:bam.h razf.h bam_endian.h kstring.h
39 sam.o:sam.h bam.h
40 bam_import.o:bam.h kseq.h khash.h razf.h
41 bam_pileup.o:bam.h razf.h ksort.h
42 bam_plcmd.o:bam.h faidx.h bam_maqcns.h glf.h
43 bam_index.o:bam.h khash.h ksort.h razf.h bam_endian.h
44 bam_lpileup.o:bam.h ksort.h
45 bam_tview.o:bam.h faidx.h bam_maqcns.h
46 bam_maqcns.o:bam.h ksort.h bam_maqcns.h
47 bam_sort.o:bam.h ksort.h razf.h
48 bam_md.o:bam.h faidx.h
49 glf.o:glf.h
50
51 faidx.o:faidx.h razf.h khash.h
52 faidx_main.o:faidx.h razf.h
53
54 clean:
55 rm -fr gmon.out *.o *.exe *.dSYM razip $(PROG) *~ *.a