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2
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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16
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3 <set_environment version="1.0">
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4 <environment_variable name="JAR_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6
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7 <set_environment version="1.0">
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8 <environment_variable name="CIRCOS_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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9 </set_environment>
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10
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20
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11 <package name="R_3_0_2" version="3.0.2">
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12 <install version="1.0">
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13 <actions_group>
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14 <actions>
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19
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15 <package name="package_r_3_0_2" version="3.0.2">
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16 <repository changeset_revision="50f7e1e71271" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
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17 </package>
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18 </actions>
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19
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20
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20 </actions_group>
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21 </install>
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22 </package>
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23
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16
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24 <package name="circos" version="0.64">
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10
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25 <install version="1.0">
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16
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26 <actions>
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27 <!-- Downloads the Circos software from its website and unpacks it -->
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28 <action type="download_by_url">http://circos.ca/distribution/circos-0.64.tgz </action>
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29 <action type="move_directory_files">
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30 <source_directory>.</source_directory>
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31 <destination_directory>$INSTALL_DIR/</destination_directory>
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32 </action>
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33 <action type="set_environment">
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34 <environment_variable name="CIRCOS_PATH" action="set_to">$INSTALL_DIR</environment_variable>
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35 </action>
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36 </actions>
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10
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37 </install>
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15
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38 <readme>
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16
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39 Downloads and installs Circos (v.0.64) for use in visualization. Requires perl to be installed.
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15
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40 </readme>
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16
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41 </package>
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42
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43 <set_environment version="1.0">
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44 <environment_variable name="R_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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45 </set_environment>
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46
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19
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47
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2
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48 </tool_dependency>
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