annotate tool_dependencies.xml @ 20:5c18d1e14a67 draft

Uploaded
author s-kaufmann
date Fri, 15 Aug 2014 11:07:51 -0400
parents 6cbc54be9466
children 3208b7066844
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
67eb55a9debe Uploaded
s-kaufmann
parents:
diff changeset
1 <?xml version="1.0"?>
67eb55a9debe Uploaded
s-kaufmann
parents:
diff changeset
2 <tool_dependency>
16
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
3 <set_environment version="1.0">
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
4 <environment_variable name="JAR_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
5 </set_environment>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
6
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
7 <set_environment version="1.0">
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
8 <environment_variable name="CIRCOS_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
9 </set_environment>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
10
20
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
11 <package name="R_3_0_2" version="3.0.2">
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
12 <install version="1.0">
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
13 <actions_group>
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
14 <actions>
19
6cbc54be9466 Uploaded
s-kaufmann
parents: 18
diff changeset
15 <package name="package_r_3_0_2" version="3.0.2">
6cbc54be9466 Uploaded
s-kaufmann
parents: 18
diff changeset
16 <repository changeset_revision="50f7e1e71271" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
6cbc54be9466 Uploaded
s-kaufmann
parents: 18
diff changeset
17 </package>
6cbc54be9466 Uploaded
s-kaufmann
parents: 18
diff changeset
18 </actions>
6cbc54be9466 Uploaded
s-kaufmann
parents: 18
diff changeset
19
20
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
20 </actions_group>
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
21 </install>
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
22 </package>
5c18d1e14a67 Uploaded
s-kaufmann
parents: 19
diff changeset
23
16
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
24 <package name="circos" version="0.64">
10
a6c5e5a41025 Uploaded
s-kaufmann
parents: 2
diff changeset
25 <install version="1.0">
16
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
26 <actions>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
27 <!-- Downloads the Circos software from its website and unpacks it -->
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
28 <action type="download_by_url">http://circos.ca/distribution/circos-0.64.tgz </action>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
29 <action type="move_directory_files">
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
30 <source_directory>.</source_directory>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
31 <destination_directory>$INSTALL_DIR/</destination_directory>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
32 </action>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
33 <action type="set_environment">
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
34 <environment_variable name="CIRCOS_PATH" action="set_to">$INSTALL_DIR</environment_variable>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
35 </action>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
36 </actions>
10
a6c5e5a41025 Uploaded
s-kaufmann
parents: 2
diff changeset
37 </install>
15
9a495fd2fe0f Uploaded
s-kaufmann
parents: 14
diff changeset
38 <readme>
16
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
39 Downloads and installs Circos (v.0.64) for use in visualization. Requires perl to be installed.
15
9a495fd2fe0f Uploaded
s-kaufmann
parents: 14
diff changeset
40 </readme>
16
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
41 </package>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
42
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
43 <set_environment version="1.0">
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
44 <environment_variable name="R_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
45 </set_environment>
a6af076506eb Uploaded
s-kaufmann
parents: 15
diff changeset
46
19
6cbc54be9466 Uploaded
s-kaufmann
parents: 18
diff changeset
47
2
67eb55a9debe Uploaded
s-kaufmann
parents:
diff changeset
48 </tool_dependency>