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1 <image>
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2 png = yes
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3 dir = /home/users/kaufmann/Software/galaxy-dist/database/job_working_directory/000/230/dataset_329_files
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4 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_329.dat.png
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5 radius = 750p
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6 background=white
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7 image_map_use = yes
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8 image_map_name = circosmap
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9 angle_offset = -90
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10 auto_alpha_colors = yes
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11 auto_alpha_steps = 5
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12 </image>
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13 karyotype = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_322.dat.karyotype
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14 chromosomes_units = 1000000
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15 chromosomes_display_default = no
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16 <colors>
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17 <<include /home/users/kaufmann/Software/shed-tools/testtoolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/036a03435919/synteny_mapper/circos-files/colors.synteny.conf>>
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18 <<include /home/users/kaufmann/Software/shed-tools/testtoolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/036a03435919/synteny_mapper/circos-files/colors.mouse.conf>>
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19 </colors>
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20 chromosomes = hs44542;mm44542
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21 chromosomes_reverse = mm44542
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22 <highlights>
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23 z = 5
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24 <highlight>
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25 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.gene-track
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26 r0 = 0.9r
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27 r1 = 0.99r
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28 stroke_thickness = 1
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29 stroke_color = black
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30 </highlight>
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31 </highlights>
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32 <plots>
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33 <plot>
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34 type=text
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35 color=black
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36 file=/home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.gene-track-labels
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37 r0=0.99r
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38 r1=1.5r
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39 label_size=9
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40 label_font=condensed
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41 show_links=yes
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42 link_dims = 0p,90p,20p,10p,20p
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43 link_thickness=1
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44 link_color=black
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45 padding =0p
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46 rpadding = 0p
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47 </plot>
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48
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49 </plots>
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50 <links>
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51 <link>
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52 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.links
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53 radius = 0.88r
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54 bezier_radius = 0r
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55 color = link_a4
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56 stroke_thickness = 1
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57 z = 10
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58 ribbon = yes
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59 <rules>
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60 <rule>
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61 condition = var(size1) < 10 || var(size2) < 10
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62 stroke_thickness = 5
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63 flow = continue
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64 </rule>
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65 <rule>
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66 condition = 1
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67 z = eval(scalar min(var(size1),var(size2)))
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68 flow = continue
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69 </rule>
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70 <rule>
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71 condition = 1
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72 stroke_color = link
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73 flow = continue
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74 </rule>
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75 <rule>
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76 condition = 1
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77 color = link_a4
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78 </rule>
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79 </rules>
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80 </link>
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81 <link>
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82 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.jumped
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83 radius = 0.88r
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84 bezier_radius = 0r
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85 color = link_jumped_a4
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86 stroke_thickness = 1
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87 z = 10
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88 ribbon = yes
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89 <rules>
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90 <rule>
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91 condition = var(size1) < 10 || var(size2) < 10
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92 stroke_thickness = 5
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93 flow = continue
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94 </rule>
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95 <rule>
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96 condition = 1
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97 z = eval(scalar min(var(size1),var(size2)))
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98 flow = continue
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99 </rule>
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100 <rule>
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101 condition = 1
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102 stroke_color = link_jumped
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103 flow = continue
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104 </rule>
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105 <rule>
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106 condition = 1
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107 color = link_jumped_a4
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108 </rule>
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109 </rules>
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110 </link>
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111 </links>
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112 <<include /home/users/kaufmann/Software/shed-tools/testtoolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/036a03435919/synteny_mapper/circos-files/synteny-region-default.conf>>
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