Mercurial > repos > s-kaufmann > synteny_mapper

comparison visualization.xml @ 13:25ec18816c91 draft

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Uploaded
author s-kaufmann
date Fri, 15 Aug 2014 09:47:29 -0400
parents a6c5e5a41025
children cc66a156025d
comparison
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12:3d74b350ec59 13:25ec18816c91
3 3
4 <requirements> 4 <requirements>
5 <requirement type="set_environment">JAR_PATH</requirement> 5 <requirement type="set_environment">JAR_PATH</requirement>
6 <requirement type="package" version="0.64">circos</requirement> 6 <requirement type="package" version="0.64">circos</requirement>
7 <requirement type="set_environment">CIRCOS_SCRIPT_PATH</requirement> 7 <requirement type="set_environment">CIRCOS_SCRIPT_PATH</requirement>
8 <requirement type="package" version="3.0.1">R_3_0_1</requirement> 8 <requirement type="package" version="3.0.2">R_3_0_2</requirement>
9 <requirement type="set_environment">R_PATH</requirement> 9 <requirement type="set_environment">R_PATH</requirement>
10 </requirements> 10 </requirements>
11 11
12 <command> 12 <command>
13 java -cp \$JAR_PATH/syntenyMapper.jar de/tum/wzw/visualization/SyntenyPlotterWrapper $syntenyRegion $mappingFile $syntenyFile $out_file1 \$CIRCOS_PATH \$CIRCOS_SCRIPT_PATH $out_file1.files_path $linear \$R_PATH 13 java -cp \$JAR_PATH/syntenyMapper.jar de/tum/wzw/visualization/SyntenyPlotterWrapper $syntenyRegion $mappingFile $syntenyFile $out_file1 \$CIRCOS_PATH \$CIRCOS_SCRIPT_PATH $out_file1.files_path $linear \$R_PATH