Mercurial > repos > s-kaufmann > synteny_mapper

comparison circos.conf @ 6:8a4190457eb7 draft

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author s-kaufmann
date Tue, 06 May 2014 04:23:25 -0400
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children a6c5e5a41025
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5:eb0aecd0480c 6:8a4190457eb7
1 <image>
2 png = yes
3 dir = /home/steffi/Software/galaxy-dist/database/job_working_directory/000/105/dataset_164_files
4 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_164.dat.png
5 radius = 750p
6 background=white
7 image_map_use = yes
8 image_map_name = circosmap
9 angle_offset = -90
10 auto_alpha_colors = yes
11 auto_alpha_steps = 5
12 </image>
13 karyotype = /home/steffi/Software/galaxy-dist/database/files/000/dataset_162.dat.karyotype
14 chromosomes_units = 1000000
15 chromosomes_display_default = no
16 <colors>
17 <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/colors.synteny.conf>>
18 <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/colors.mouse.conf>>
19 </colors>
20 chromosomes = hs44454;mm44454
21 <highlights>
22 z = 5
23 <highlight>
24 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.gene-track
25 r0 = 0.9r
26 r1 = 0.99r
27 stroke_thickness = 1
28 stroke_color = black
29 </highlight>
30 </highlights>
31 <plots>
32 <plot>
33 type=text
34 color=black
35 file=/home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.gene-track-labels
36 r0=0.99r
37 r1=1.5r
38 label_size=9
39 label_font=condensed
40 show_links=yes
41 link_dims = 0p,90p,20p,10p,20p
42 link_thickness=1
43 link_color=black
44 padding =0p
45 rpadding = 0p
46 </plot>
47
48 </plots>
49 <links>
50 <link>
51 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.links
52 radius = 0.88r
53 bezier_radius = 0r
54 color = link_a4
55 stroke_thickness = 1
56 z = 10
57 ribbon = yes
58 <rules>
59 <rule>
60 condition = var(size1) < 10 || var(size2) < 10
61 stroke_thickness = 5
62 flow = continue
63 </rule>
64 <rule>
65 condition = 1
66 z = eval(scalar min(var(size1),var(size2)))
67 flow = continue
68 </rule>
69 <rule>
70 condition = 1
71 stroke_color = link
72 flow = continue
73 </rule>
74 <rule>
75 condition = 1
76 color = link_a4
77 </rule>
78 </rules>
79 </link>
80 <link>
81 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.jumped
82 radius = 0.88r
83 bezier_radius = 0r
84 color = link_jumped_a4
85 stroke_thickness = 1
86 z = 10
87 ribbon = yes
88 <rules>
89 <rule>
90 condition = var(size1) < 10 || var(size2) < 10
91 stroke_thickness = 5
92 flow = continue
93 </rule>
94 <rule>
95 condition = 1
96 z = eval(scalar min(var(size1),var(size2)))
97 flow = continue
98 </rule>
99 <rule>
100 condition = 1
101 stroke_color = link_jumped
102 flow = continue
103 </rule>
104 <rule>
105 condition = 1
106 color = link_jumped_a4
107 </rule>
108 </rules>
109 </link>
110 </links>
111 <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/synteny-region-default.conf>>