Mercurial > repos > s-kaufmann > synteny_mapper
comparison tool_dependencies.xml @ 10:a6c5e5a41025 draft
Uploaded
| author | s-kaufmann |
|---|---|
| date | Fri, 15 Aug 2014 08:35:52 -0400 |
| parents | 67eb55a9debe |
| children | 3d74b350ec59 |
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| 9:dd2fdd397831 | 10:a6c5e5a41025 |
|---|---|
| 23 </actions> | 23 </actions> |
| 24 </install> | 24 </install> |
| 25 <readme> | 25 <readme> |
| 26 Downloads and installs Circos (v.0.64) for use in visualization. Requires perl to be installed. | 26 Downloads and installs Circos (v.0.64) for use in visualization. Requires perl to be installed. |
| 27 </readme> | 27 </readme> |
| 28 </package> | 28 </package> |
| 29 | |
| 30 <package name="R_3_0_1" version="3.0.1"> | |
| 31 <install version="1.0"> | |
| 32 <actions> | |
| 33 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> | |
| 34 <!--<action type="set_environment_for_install"> | |
| 35 <repository name="package_readline_6_2" owner="iuc"> | |
| 36 <package name="readline" version="6.2" /> | |
| 37 </repository> | |
| 38 </action>--> | |
| 39 | |
| 40 <action type="shell_command"> | |
| 41 ./configure --with-readline=no --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/ | |
| 42 </action> | |
| 43 <action type="shell_command">make</action> | |
| 44 <action type="shell_command">make install</action> | |
| 45 <action type="set_environment"> | |
| 46 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> | |
| 47 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | |
| 48 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | |
| 49 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> | |
| 50 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> | |
| 51 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | |
| 52 </action> | |
| 53 </actions> | |
| 54 </install> | |
| 55 <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme> | |
| 56 </package> | |
| 29 | 57 |
| 30 </tool_dependency> | 58 </tool_dependency> |