Mercurial > repos > s-kaufmann > synteny_mapper
comparison tool_dependencies.xml @ 18:cc66a156025d draft
Uploaded
author | s-kaufmann |
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date | Fri, 15 Aug 2014 10:50:34 -0400 |
parents | 98c0153c737a |
children | 6cbc54be9466 |
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17:98c0153c737a | 18:cc66a156025d |
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29 | 29 |
30 <set_environment version="1.0"> | 30 <set_environment version="1.0"> |
31 <environment_variable name="R_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | 31 <environment_variable name="R_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> |
32 </set_environment> | 32 </set_environment> |
33 | 33 |
34 <package name="readline" version="6.2"> | 34 <package name="package_r_3_0_2" version="3.0.2"> |
35 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 35 <repository changeset_revision="50f7e1e71271" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
36 </package> | 36 </package> |
37 <package name="ncurses" version="5.9"> | |
38 <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
39 </package> | |
40 <package name="libpng" version="1.6.7"> | |
41 <repository changeset_revision="51f77dcf27bd" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
42 </package> | |
43 <package name="R_3_0_2" version="3.0.2"> | |
44 <install version="1.0"> | |
45 <actions> | |
46 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.2.tar.gz</action> | |
47 <action type="set_environment_for_install"> | |
48 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
49 <package name="readline" version="6.2" /> | |
50 </repository> | |
51 <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
52 <package name="ncurses" version="5.9" /> | |
53 </repository> | |
54 <repository changeset_revision="51f77dcf27bd" name="package_libpng_1_6_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu"> | |
55 <package name="libpng" version="1.6.7" /> | |
56 </repository> | |
57 </action> | |
58 | |
59 <action type="shell_command"> | |
60 ./configure CPPFLAGS="-I$READLINE_INCLUDE_PATH -I${LIBPNG_ROOT}/include" LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -L${LIBPNG_ROOT}/lib -lreadline -lncurses" --with-libpng --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR --datarootdir=$INSTALL_DIR/share/ | |
61 </action> | |
62 | |
63 <action type="shell_command">make</action> | |
64 <action type="shell_command">make install</action> | |
65 <action type="set_environment"> | |
66 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> | |
67 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | |
68 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | |
69 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> | |
70 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> | |
71 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | |
72 </action> | |
73 </actions> | |
74 </install> | |
75 <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme> | |
76 </package> | |
77 | |
78 </tool_dependency> | 37 </tool_dependency> |