Mercurial > repos > s-kaufmann > synteny_mapper

comparison track-mapper.xml @ 3:d8da7251bacf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author s-kaufmann
date Mon, 10 Feb 2014 11:20:24 -0500
parents 67eb55a9debe
children
comparison
equal deleted inserted replaced
2:67eb55a9debe 3:d8da7251bacf
28 <outputs> 28 <outputs>
29 <data format="tabular" name="out_file1" label="Similarity track"/> 29 <data format="tabular" name="out_file1" label="Similarity track"/>
30 </outputs> 30 </outputs>
31 <tests> 31 <tests>
32 <test> 32 <test>
33 <param name="mappingFile" value="hom_sapi-mus_musc-output-mapping"/> 33 <param name="mappingFile" value="Gene_mapping1.out"/>
34 <param name="bedfile1" value="bed1.bed"/> 34 <param name="bedfile1" value="encode-broad-histone-h3k4me1.hg19.bed"/>
35 <param name="bedfile2" value="bed2.bed"/> 35 <param name="bedfile2" value="encode-caltech-h3k4me1.mm10.bed"/>
36 <param name="scoreCol" value="4"/> 36 <param name="scoreCol" value="4"/>
37 <output name="out_file1" file="out_file"/> 37 <output name="out_file1" file="Similarity_track.out"/>
38 </test> 38 </test>
39 </tests> 39 </tests>
40 <help> 40 <help>
41 41
42 This tool utilizes the gene-based mapping generated with SyntenyMapper to calculate a similarity measure of a track's average gene/intergenic region coverage for two species. 42 This tool utilizes the gene-based mapping generated with SyntenyMapper to calculate a similarity measure of a track's average gene/intergenic region coverage for two species.