Mercurial > repos > s-kaufmann > synteny_mapper
diff tool_dependencies.xml @ 12:3d74b350ec59 draft
Uploaded
author | s-kaufmann |
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date | Fri, 15 Aug 2014 09:43:10 -0400 |
parents | a6c5e5a41025 |
children | acb6cae8bfec |
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--- a/tool_dependencies.xml Fri Aug 15 09:21:02 2014 -0400 +++ b/tool_dependencies.xml Fri Aug 15 09:43:10 2014 -0400 @@ -27,19 +27,38 @@ </readme> </package> - <package name="R_3_0_1" version="3.0.1"> + <set_environment version="1.0"> + <environment_variable name="R_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> +<package name="readline" version="6.2"> + <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ncurses" version="5.9"> + <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="libpng" version="1.6.7"> + <repository changeset_revision="51f77dcf27bd" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="R_3_0_2" version="3.0.2"> <install version="1.0"> <actions> - <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> - <!--<action type="set_environment_for_install"> - <repository name="package_readline_6_2" owner="iuc"> + <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.2.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="readline" version="6.2" /> </repository> - </action>--> + <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="ncurses" version="5.9" /> + </repository> + <repository changeset_revision="51f77dcf27bd" name="package_libpng_1_6_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="libpng" version="1.6.7" /> + </repository> + </action> - <action type="shell_command"> - ./configure --with-readline=no --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/ +<action type="shell_command"> + ./configure CPPFLAGS="-I$READLINE_INCLUDE_PATH -I${LIBPNG_ROOT}/include" LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -L${LIBPNG_ROOT}/lib -lreadline -lncurses" --with-libpng --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR --datarootdir=$INSTALL_DIR/share/ </action> + <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> @@ -53,6 +72,6 @@ </actions> </install> <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme> - </package> + </package> </tool_dependency>