# HG changeset patch
# User s-kaufmann
# Date 1408115723 14400
# Node ID 3208b7066844d225b58373c3244133b47ee3d8dc
# Parent 5c18d1e14a67fa20c6df2b68160b602e6da27c53
Uploaded
diff -r 5c18d1e14a67 -r 3208b7066844 tool_dependencies.xml
--- a/tool_dependencies.xml Fri Aug 15 11:07:51 2014 -0400
+++ b/tool_dependencies.xml Fri Aug 15 11:15:23 2014 -0400
@@ -8,19 +8,7 @@
$REPOSITORY_INSTALL_DIR
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@@ -44,5 +32,99 @@
$REPOSITORY_INSTALL_DIR
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+ http://depot.galaxyproject.org/package/darwin/x86_64/R/R-3.0.2-Darwin-x86_64.tgz
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+ .
+ $INSTALL_DIR
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+ http://depot.galaxyproject.org/package/linux/x86_64/R/R-3.0.2-Linux-x86_64.tgz
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+ .
+ $INSTALL_DIR
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+ $INSTALL_DIR/lib/libtcl8.4.so
+ $INSTALL_DIR/lib/libtk8.4.so
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+ http://cran.rstudio.com/src/base/R-3/R-3.0.2.tar.gz
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+ export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIB_PATH" &&
+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &&
+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &&
+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" &&
+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &&
+ export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &&
+ export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &&
+ export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &&
+ ./configure --with-tcltk \
+ --with-blas \
+ --with-lapack \
+ --with-readline \
+ --with-cairo \
+ --with-libpng \
+ --without-x \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --libdir=$INSTALL_DIR/lib \
+ --prefix=$INSTALL_DIR
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+
+ sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R
+ sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R
+
+
+ $INSTALL_DIR
+ $INSTALL_DIR/lib/R
+ $INSTALL_DIR/lib/R
+ $INSTALL_DIR/lib/R/library
+ $INSTALL_DIR/bin
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+ The precompiled versions were built 2014-03-07.
+ R is a free software environment for statistical computing and graphics. http://www.r-project.org/
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+