Mercurial > repos > sagun98 > micropita
view galaxy_micropita @ 1:3f7e66aea2ca draft
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| author | sagun98 |
|---|---|
| date | Wed, 02 Jun 2021 16:08:13 +0000 |
| parents | 3c1f2f6a6a53 |
| children |
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aria-label="Search or jump to" aria-haspopup="listbox" aria-expanded="false" > <div class="position-relative"> <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-site-search-form" role="search" aria-label="Site" data-scope-type="Repository" data-scope-id="259785191" data-scoped-search-url="/biobakery/galaxy_micropita/search" data-owner-scoped-search-url="/orgs/biobakery/search" data-unscoped-search-url="/search" action="/biobakery/galaxy_micropita/search" accept-charset="UTF-8" method="get"> <label class="form-control input-sm header-search-wrapper p-0 js-chromeless-input-container header-search-wrapper-jump-to position-relative d-flex flex-justify-between flex-items-center"> <input type="text" class="form-control input-sm header-search-input jump-to-field js-jump-to-field js-site-search-focus js-site-search-field is-clearable" data-hotkey="s,/" name="q" value="" placeholder="Search" data-unscoped-placeholder="Search GitHub" data-scoped-placeholder="Search" 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js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="suggestion"> <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg> <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path></svg> </div> <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> </div> <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> In this repository </span> <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> All GitHub </span> <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> </div> <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> Jump to <span class="d-inline-block ml-1 v-align-middle">↵</span> </div> </a> </li> </ul> <ul class="d-none js-jump-to-no-results-template-container"> <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> <span class="color-text-secondary">No suggested jump to results</span> </li> </ul> <ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="scoped_search"> <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg> <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path></svg> </div> <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> </div> <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> In this repository </span> <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> All GitHub </span> <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> </div> <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary 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11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg> <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path></svg> </div> <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> </div> <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this organization"> In this organization </span> <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> All GitHub </span> <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> </div> <div aria-hidden="true" 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1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg> <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path></svg> </div> <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> </div> <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> In this repository </span> <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> All GitHub </span> <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> </div> <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> Jump to <span class="d-inline-block ml-1 v-align-middle">↵</span> </div> </a> </li> </ul> </div> </label> </form> </div> </div> </div> <a href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita" class="HeaderMenu-link flex-shrink-0 no-underline mr-3" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="44c7a74ba42175c753b75b1bbf9f2449e83ed7fb0622b4e1422a37b88412d1de" data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in"> Sign in </a> <nux-signup-candidates data-attribute-name="href" data-candidate-url="/join_next?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=biobakery%2Fgalaxy_micropita" data-action="loaded:nux-signup-candidates#determineSignupAction" > <a href="/join?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=biobakery%2Fgalaxy_micropita" class="HeaderMenu-link flex-shrink-0 d-inline-block no-underline border color-border-tertiary rounded px-2 py-1" data-target="nux-signup-candidates.signupAction" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="44c7a74ba42175c753b75b1bbf9f2449e83ed7fb0622b4e1422a37b88412d1de" data-hydro-click="{"event_type":"analytics.event","payload":{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>;ref_cta:Sign up;ref_loc:header logged out","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="0e0a82b8e88f8e7802a52fe9a63b7d260560983b64b73c50f1ae4dafd34d42d8" > Sign up </a> </nux-signup-candidates> </div> </div> </div> </header> </div> <div id="start-of-content" class="show-on-focus"></div> <div data-pjax-replace id="js-flash-container"> <template class="js-flash-template"> <div class="flash flash-full {{ className }}"> <div class=" px-2" > <button class="flash-close js-flash-close" type="button" aria-label="Dismiss this message"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-x"> <path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 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110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> <span class="author flex-self-stretch" itemprop="author"> <a class="url fn" rel="author" data-hovercard-type="organization" data-hovercard-url="/orgs/biobakery/hovercard" href="/biobakery">biobakery</a> </span> <span class="mx-1 flex-self-stretch color-text-secondary">/</span> <strong itemprop="name" class="mr-2 flex-self-stretch"> <a data-pjax="#js-repo-pjax-container" href="/biobakery/galaxy_micropita">galaxy_micropita</a> </strong> </h1> </div> <ul class="pagehead-actions flex-shrink-0 d-none d-md-inline" style="padding: 2px 0;"> <li> <a class="tooltipped tooltipped-s btn btn-sm" aria-label="You must be signed in to change notification settings" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="d01fea0c14fc896d0e875bbdd2f94d2397589dbca2d4ac4500dfe0b5f8aa1763" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-bell"> <path d="M8 16a2 2 0 001.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 008 16z"></path><path fill-rule="evenodd" d="M8 1.5A3.5 3.5 0 004.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.018.018 0 00-.003.01l.001.006c0 .002.002.004.004.006a.017.017 0 00.006.004l.007.001h10.964l.007-.001a.016.016 0 00.006-.004.016.016 0 00.004-.006l.001-.007a.017.017 0 00-.003-.01l-1.703-2.554a1.75 1.75 0 01-.294-.97V5A3.5 3.5 0 008 1.5zM3 5a5 5 0 0110 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.518 1.518 0 0113.482 13H2.518a1.518 1.518 0 01-1.263-2.36l1.703-2.554A.25.25 0 003 7.947V5z"></path> </svg> Notifications </a> </li> <li> <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":259785191,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="4deaf4487b42d9180f2c9c9188099f901045ed017c624119a37727c5062f3a7a" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-star v-align-text-bottom mr-1"> <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path> </svg> <span data-view-component="true"> Star </span></a> <a class="social-count js-social-count" href="/biobakery/galaxy_micropita/stargazers" aria-label="0 users starred this repository"> 0 </a> </li> <li> <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to fork a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":259785191,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="d7dc944fd5a8c9628bbff284db8e42da7f591e260925d228742f0e144c156bf4" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-repo-forked"> <path fill-rule="evenodd" d="M5 3.25a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm0 2.122a2.25 2.25 0 10-1.5 0v.878A2.25 2.25 0 005.75 8.5h1.5v2.128a2.251 2.251 0 101.5 0V8.5h1.5a2.25 2.25 0 002.25-2.25v-.878a2.25 2.25 0 10-1.5 0v.878a.75.75 0 01-.75.75h-4.5A.75.75 0 015 6.25v-.878zm3.75 7.378a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm3-8.75a.75.75 0 100-1.5.75.75 0 000 1.5z"></path> </svg> Fork </a> <a href="/biobakery/galaxy_micropita/network/members" class="social-count" aria-label="0 users forked this repository"> 0 </a> </li> </ul> </div> <div class="d-block d-md-none mb-2 px-3 px-md-4 px-lg-5"> <div class="mb-3"> <a class="Link--secondary no-underline mr-3" href="/biobakery/galaxy_micropita/stargazers"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-star mr-1"> <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path> </svg> <span class="text-bold">0</span> stars </a> <a class="Link--secondary no-underline" href="/biobakery/galaxy_micropita/network/members"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-repo-forked mr-1"> <path fill-rule="evenodd" d="M5 3.25a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm0 2.122a2.25 2.25 0 10-1.5 0v.878A2.25 2.25 0 005.75 8.5h1.5v2.128a2.251 2.251 0 101.5 0V8.5h1.5a2.25 2.25 0 002.25-2.25v-.878a2.25 2.25 0 10-1.5 0v.878a.75.75 0 01-.75.75h-4.5A.75.75 0 015 6.25v-.878zm3.75 7.378a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm3-8.75a.75.75 0 100-1.5.75.75 0 000 1.5z"></path> </svg> <span class="text-bold">0</span> forks </a> </div> <div class="d-flex"> <div class="flex-1 mr-2"> <a class="btn btn-sm btn-block tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":259785191,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="4deaf4487b42d9180f2c9c9188099f901045ed017c624119a37727c5062f3a7a" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-star v-align-text-bottom mr-1"> <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path> </svg> <span data-view-component="true"> Star </span></a> </div> <div class="flex-1"> <a class="tooltipped tooltipped-s btn btn-sm btn-block" aria-label="You must be signed in to change notification settings" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="d01fea0c14fc896d0e875bbdd2f94d2397589dbca2d4ac4500dfe0b5f8aa1763" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-bell"> <path d="M8 16a2 2 0 001.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 008 16z"></path><path fill-rule="evenodd" d="M8 1.5A3.5 3.5 0 004.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.018.018 0 00-.003.01l.001.006c0 .002.002.004.004.006a.017.017 0 00.006.004l.007.001h10.964l.007-.001a.016.016 0 00.006-.004.016.016 0 00.004-.006l.001-.007a.017.017 0 00-.003-.01l-1.703-2.554a1.75 1.75 0 01-.294-.97V5A3.5 3.5 0 008 1.5zM3 5a5 5 0 0110 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.518 1.518 0 0113.482 13H2.518a1.518 1.518 0 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2.492 0 016 7h4a1 1 0 001-1v-.628A2.25 2.25 0 019.5 3.25zM4.25 12a.75.75 0 100 1.5.75.75 0 000-1.5zM3.5 3.25a.75.75 0 111.5 0 .75.75 0 01-1.5 0z"></path> </svg> <span class="css-truncate-target" data-menu-button>master</span> <span class="dropdown-caret"></span> </summary> <div class="SelectMenu"> <div class="SelectMenu-modal"> <header class="SelectMenu-header"> <span class="SelectMenu-title">Switch branches/tags</span> <button class="SelectMenu-closeButton" type="button" data-toggle-for="branch-select-menu"><svg aria-label="Close menu" aria-hidden="false" role="img" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-x"> <path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 010-1.06z"></path> </svg></button> </header> <input-demux data-action="tab-container-change:input-demux#storeInput tab-container-changed:input-demux#updateInput"> <tab-container class="d-flex flex-column js-branches-tags-tabs" style="min-height: 0;"> <div class="SelectMenu-filter"> <input data-target="input-demux.source" id="context-commitish-filter-field" class="SelectMenu-input form-control" aria-owns="ref-list-branches" data-controls-ref-menu-id="ref-list-branches" autofocus autocomplete="off" aria-label="Filter branches/tags" placeholder="Filter branches/tags" type="text" > </div> <div class="SelectMenu-tabs" role="tablist" data-target="input-demux.control" > <button class="SelectMenu-tab" type="button" role="tab" aria-selected="true">Branches</button> <button class="SelectMenu-tab" type="button" role="tab">Tags</button> </div> <div role="tabpanel" id="ref-list-branches" data-filter-placeholder="Filter branches/tags" class="d-flex flex-column flex-auto overflow-auto" tabindex=""> <ref-selector type="branch" data-targets="input-demux.sinks" data-action=" input-entered:ref-selector#inputEntered 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hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span> </a> </template> <footer class="SelectMenu-footer"><a href="/biobakery/galaxy_micropita/branches">View all branches</a></footer> </ref-selector> </div> <div role="tabpanel" id="tags-menu" data-filter-placeholder="Find a tag" class="d-flex flex-column flex-auto overflow-auto" tabindex="" hidden> <ref-selector type="tag" data-action=" input-entered:ref-selector#inputEntered tab-selected:ref-selector#tabSelected focus-list:ref-selector#focusFirstListMember " data-targets="input-demux.sinks" query-endpoint="/biobakery/galaxy_micropita/refs" cache-key="v0:1588120584.0" current-committish="bWFzdGVy" default-branch="bWFzdGVy" name-with-owner="YmlvYmFrZXJ5L2dhbGF4eV9taWNyb3BpdGE=" > <template data-target="ref-selector.fetchFailedTemplate"> <div class="SelectMenu-message" data-index="{{ index }}">Could not load tags</div> </template> <template data-target="ref-selector.noMatchTemplate"> <div class="SelectMenu-message" data-index="{{ index }}">Nothing to show</div> </template> <template data-target="ref-selector.itemTemplate"> <a href="https://github.com/biobakery/galaxy_micropita/tree/{{ urlEncodedRefName }}" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check"> <path fill-rule="evenodd" d="M13.78 4.22a.75.75 0 010 1.06l-7.25 7.25a.75.75 0 01-1.06 0L2.22 9.28a.75.75 0 011.06-1.06L6 10.94l6.72-6.72a.75.75 0 011.06 0z"></path> </svg> <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span> <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span> </a> </template> <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list" style="max-height: 330px"> <div class="SelectMenu-loading pt-3 pb-0" aria-label="Menu is loading"> <svg style="box-sizing: content-box; color: var(--color-icon-primary);" viewBox="0 0 16 16" fill="none" data-view-component="true" width="32" height="32" class="anim-rotate"> <circle cx="8" cy="8" r="7" stroke="currentColor" stroke-opacity="0.25" stroke-width="2" vector-effect="non-scaling-stroke" /> <path d="M15 8a7.002 7.002 0 00-7-7" stroke="currentColor" stroke-width="2" stroke-linecap="round" vector-effect="non-scaling-stroke" /> </svg> </div> </div> <footer class="SelectMenu-footer"><a href="/biobakery/galaxy_micropita/tags">View all tags</a></footer> </ref-selector> </div> </tab-container> </input-demux> </div> </div> </details> </div> <div class="flex-self-center ml-3 flex-self-stretch d-none d-lg-flex flex-items-center lh-condensed-ultra"> <a data-pjax href="/biobakery/galaxy_micropita/branches" class="Link--primary no-underline"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-git-branch text-gray"> <path fill-rule="evenodd" d="M11.75 2.5a.75.75 0 100 1.5.75.75 0 000-1.5zm-2.25.75a2.25 2.25 0 113 2.122V6A2.5 2.5 0 0110 8.5H6a1 1 0 00-1 1v1.128a2.251 2.251 0 11-1.5 0V5.372a2.25 2.25 0 111.5 0v1.836A2.492 2.492 0 016 7h4a1 1 0 001-1v-.628A2.25 2.25 0 019.5 3.25zM4.25 12a.75.75 0 100 1.5.75.75 0 000-1.5zM3.5 3.25a.75.75 0 111.5 0 .75.75 0 01-1.5 0z"></path> </svg> <strong>1</strong> <span class="color-text-tertiary">branch</span> </a> <a data-pjax href="/biobakery/galaxy_micropita/tags" class="ml-3 Link--primary no-underline"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-tag text-gray"> <path fill-rule="evenodd" d="M2.5 7.775V2.75a.25.25 0 01.25-.25h5.025a.25.25 0 01.177.073l6.25 6.25a.25.25 0 010 .354l-5.025 5.025a.25.25 0 01-.354 0l-6.25-6.25a.25.25 0 01-.073-.177zm-1.5 0V2.75C1 1.784 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version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M7.47 10.78a.75.75 0 001.06 0l3.75-3.75a.75.75 0 00-1.06-1.06L8.75 8.44V1.75a.75.75 0 00-1.5 0v6.69L4.78 5.97a.75.75 0 00-1.06 1.06l3.75 3.75zM3.75 13a.75.75 0 000 1.5h8.5a.75.75 0 000-1.5h-8.5z"></path></svg> Code <span class="dropdown-caret"></span> </summary> <div class="position-relative"> <div class="dropdown-menu dropdown-menu-sw p-0" style="top:6px;width:378px;"> <div data-target="get-repo.modal"> <div class="border-bottom p-3"> <a class="Link--muted float-right tooltipped tooltipped-s" href="https://docs.github.com/articles/which-remote-url-should-i-use" target="_blank" aria-label="Which remote URL should I use?"> <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-question"> <path fill-rule="evenodd" d="M8 1.5a6.5 6.5 0 100 13 6.5 6.5 0 000-13zM0 8a8 8 0 1116 0A8 8 0 010 8zm9 3a1 1 0 11-2 0 1 1 0 012 0zM6.92 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6.28a.75.75 0 111.06-1.06l2.25 2.25c.141.14.22.331.22.53zm1.5 1.5a.75.75 0 000 1.5h3a.75.75 0 000-1.5h-3z"></path></svg> Clone </div> <tab-container> <div class="UnderlineNav my-2 box-shadow-none"> <div class="UnderlineNav-body" role="tablist"> <button name="button" type="button" role="tab" class="UnderlineNav-item lh-default f6 py-0 px-0 mr-2 position-relative" aria-selected="true" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"USE_HTTPS","git_repository_type":"REPOSITORY","repository_id":259785191,"originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="02db70171d04d71002b6724284e5b925c091b9124a6b7a957e0e96db0f120fa3"> HTTPS </button> <button name="button" type="button" role="tab" class="UnderlineNav-item lh-default f6 py-0 px-0 mr-2 position-relative" 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</div> <div role="rowheader" class="flex-auto min-width-0 col-md-2 mr-3"> <span class="css-truncate css-truncate-target d-block width-fit"><a class="js-navigation-open Link--primary" title="readme.md" data-pjax="#repo-content-pjax-container" href="/biobakery/galaxy_micropita/blob/master/readme.md">readme.md</a></span> </div> <div role="gridcell" class="flex-auto min-width-0 d-none d-md-block col-5 mr-3" > <div class="Skeleton Skeleton--text col-7"> </div> </div> <div role="gridcell" class="color-text-tertiary text-right" style="width:100px;"> <div class="Skeleton Skeleton--text"> </div> </div> </div> <div role="row" class="Box-row Box-row--focus-gray py-2 d-flex position-relative js-navigation-item "> <div role="gridcell" class="mr-3 flex-shrink-0" style="width: 16px;"> <svg aria-label="File" aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-file color-icon-tertiary"> <path fill-rule="evenodd" d="M3.75 1.5a.25.25 0 00-.25.25v11.5c0 .138.112.25.25.25h8.5a.25.25 0 00.25-.25V6H9.75A1.75 1.75 0 018 4.25V1.5H3.75zm5.75.56v2.19c0 .138.112.25.25.25h2.19L9.5 2.06zM2 1.75C2 .784 2.784 0 3.75 0h5.086c.464 0 .909.184 1.237.513l3.414 3.414c.329.328.513.773.513 1.237v8.086A1.75 1.75 0 0112.25 15h-8.5A1.75 1.75 0 012 13.25V1.75z"></path> </svg> </div> <div role="rowheader" class="flex-auto min-width-0 col-md-2 mr-3"> <span class="css-truncate css-truncate-target d-block width-fit"><a class="js-navigation-open Link--primary" title="tool_dependencies.xml" data-pjax="#repo-content-pjax-container" href="/biobakery/galaxy_micropita/blob/master/tool_dependencies.xml">tool_dependencies.xml</a></span> </div> <div role="gridcell" class="flex-auto min-width-0 d-none d-md-block col-5 mr-3" > <div class="Skeleton Skeleton--text col-7"> </div> </div> <div role="gridcell" class="color-text-tertiary text-right" style="width:100px;"> <div class="Skeleton Skeleton--text"> </div> </div> </div> </div> <div class="Details-content--shown Box-footer d-md-none p-0"> <button type="button" class="d-block btn-link js-details-target width-full px-3 py-2" aria-expanded="false"> View code </button> </div> </div> </include-fragment> </div> <div id="readme" class="Box md js-code-block-container Box--responsive"> <div class="d-flex Box-header border-bottom-0 flex-items-center flex-justify-between color-bg-primary rounded-top-2" > <div class="d-flex flex-items-center"> <h2 class="Box-title"> <a href="#readme" data-view-component="true" class="Link--primary">readme.md</a> </h2> </div> </div> <div class="Popover anim-scale-in js-tagsearch-popover" hidden data-tagsearch-url="/biobakery/galaxy_micropita/find-definition" data-tagsearch-ref="master" data-tagsearch-path="readme.md" data-tagsearch-lang="Markdown" data-hydro-click="{"event_type":"code_navigation.click_on_symbol","payload":{"action":"click_on_symbol","repository_id":259785191,"ref":"master","language":"Markdown","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="f09a003019ab0cfe742a2cda57cece73c027f2f2a39a26f1200a74ad92162e68"> <div class="Popover-message Popover-message--large Popover-message--top-left TagsearchPopover mt-1 mb-4 mx-auto Box color-shadow-large"> <div class="TagsearchPopover-content js-tagsearch-popover-content overflow-auto" style="will-change:transform;"> </div> </div> </div> <div data-target="readme-toc.content" class="Box-body px-5 pb-5"> <article class="markdown-body entry-content container-lg" itemprop="text"><p>Installation instructions for micropita in a galaxy environment.</p> <p>micropita is installed in Galaxy using the Admin tool of Galaxy.</p> <p>In the</p> <div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="Admin tool "><pre><code>Admin tool </code></pre></div> <p>select</p> <div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="Search and browse tool sheds "><pre><code>Search and browse tool sheds </code></pre></div> <p>select the tool shed and enter</p> <div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="micropita "><pre><code>micropita </code></pre></div> <p>select</p> <div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="preview and install "><pre><code>preview and install </code></pre></div> <p>NOTE: You have to be an administrator in your Galaxy instance to install.</p> <p>For general reference about micropita refer to:</p> <div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="https://bitbucket.org/biobakery/micropita "><pre><code>https://bitbucket.org/biobakery/micropita 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