Mercurial > repos > sagun98 > micropita
view galaxy_micropita/micropita_format_input_selector.py @ 3:8fb4630ab314 draft default tip
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author | sagun98 |
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date | Thu, 03 Jun 2021 17:07:36 +0000 |
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#!/usr/bin/env python """ Author: George Weingart Description: Dynamically read columns from input file for UI """ ##################################################################################### #Copyright (C) <2012> # #Permission is hereby granted, free of charge, to any person obtaining a copy of #this software and associated documentation files (the "Software"), to deal in the #Software without restriction, including without limitation the rights to use, copy, #modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, #and to permit persons to whom the Software is furnished to do so, subject to #the following conditions: # #The above copyright notice and this permission notice shall be included in all copies #or substantial portions of the Software. # #THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, #INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A #PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT #HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION #OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE #SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. ##################################################################################### __author__ = "George Weingart" __copyright__ = "Copyright 2012" __credits__ = ["George Weingart"] __license__ = "MIT" __maintainer__ = "George Weingart" __email__ = "george.weingart@gmail.com" __status__ = "Development" import sys,string,time from pprint import pprint def red(st,l): if len(st) <= l: return st l1,l2 = l/2,l/2 return st[:l1]+".."+st[len(st)-l2:] def get_cols(data,full_names): if data == "": return [] max_len =32 fname = data.dataset.file_name input_file = open(fname,'rU') input_lines = input_file.readlines() input_file.close() table_lines = [] for x in input_lines: first_column = x.split('\t')[0] table_lines.append(first_column) opt = [] rc = '' lines = [] try: lines = [(red((rc+v.split()[0]),max_len),'%d' % (i+1),False) for i,v in enumerate(table_lines) if v] except: l1 = '*ALL*' l2 = 1 l3 = False MyList = [l1,l2,l3] lines.append(MyList) return opt+lines def get_cols_add_line(data,full_names,lastmeta): if data == "": return [] display_to = 1 try: display_to = int(lastmeta) except: pass max_len = 32 fname = data.dataset.file_name input_file = open(fname,'rU') input_lines = input_file.readlines() input_file.close() table_lines = [] for x in input_lines: first_column = x.split('\t')[0] table_lines.append(first_column) table_lines.insert(0,'-') if not display_to == 1: del table_lines[display_to + 1:] opt = [] rc = '' lines = [] try: lines = [(red((rc+v.split()[0]),max_len),'%d' % (i+1),False) for i,v in enumerate(table_lines) if v] except: l1 = '*ALL*' l2 = 1 l3 = False MyList = [l1,l2,l3] lines.append(MyList) return opt+lines def get_cols_features(data,full_names,lastmeta): if data == "": return [] display_from = 1 try: display_from = int(lastmeta) except: pass max_len = 32 fname = data.dataset.file_name input_file = open(fname,'rU') input_lines = input_file.readlines() input_file.close() table_lines = [] for x in input_lines: first_column = x.split('\t')[0] table_lines.append(first_column) opt = [] rc = '' del table_lines[:display_from] lines = [] try: lines = [(red((rc+v.split()[0]),max_len),'%d' % (i+1),False) for i,v in enumerate(table_lines) if v] except: l1 = '*ALL*' l2 = 1 l3 = False MyList = [l1,l2,l3] lines.append(MyList) return opt+lines