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annotate panama.xml @ 1:7265ecc0f879

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Moving the files to proper hiererachy levels
author Saket Choudhary<saketkc@gmail.com>
date Sun, 16 Jun 2013 12:24:55 +0530
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children 54dddd7b44d0
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7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
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1 <tool id="panama1" name="panama" version="1.0.0">
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
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2 <requirements>
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Saket Choudhary<saketkc@gmail.com>
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3 <requirement type="package">panama</requirement>
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4 </requirements>
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Saket Choudhary<saketkc@gmail.com>
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5 <description>eQTL Analysis using PANAMA(http://ml.sheffield.ac.uk/qtl/panama/)</description>
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6 <command interpreter="python">
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7 panama_run.py --exp_data=$expression_data --snp_data=$snp_data --output1=$output1
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8 </command>
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Saket Choudhary<saketkc@gmail.com>
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9 <inputs>
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10 <param name="expression_data" type="data" format="text" label="Select Expression Data" />
7265ecc0f879 Moving the files to proper hiererachy levels
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11 <param name="snp_data" type="data" format="text" label="Select SNP data" />
7265ecc0f879 Moving the files to proper hiererachy levels
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12 </inputs>
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13 <outputs>
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14 <data name="output1" format="text" />
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15 </outputs>
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16 <tests>
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17 <test>
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Saket Choudhary<saketkc@gmail.com>
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18 <param name="expression_data" value="sim_expr.csv" />
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19 <param name="snp_data" value="sim_snps.csv" />
7265ecc0f879 Moving the files to proper hiererachy levels
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20 <output name="output1" file="PANAMA_results.csv" />
7265ecc0f879 Moving the files to proper hiererachy levels
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21 </test>
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22 </tests>
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25 </tool>