diff README @ 8:168b9ff24bcb default tip

Merge multiple heads.
author Dave Bouvier <dave@bx.psu.edu>
date Mon, 27 Jan 2014 14:07:41 -0500
parents bef89654259a 88a4d4c31bb6
children
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--- a/README	Fri Jun 21 10:56:27 2013 +0530
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,30 +0,0 @@
-
-
-This is a wrapper for a set of eQTL analysis tools.
-
-Though, currently only PANAMA is supported. 
-PANAMA takes in input as :
-
-$panama expression_data.csv snp_data.csv
-
-Where expression_data.csv is a Comma Separated Values file containing the gene expression data 
-in the following format:
-
-         sample1, sample2, ..., sampleN
-  gene1  value ,  value , ...,  value
-  gene2  value ,  value , ...,  value
-  ...
-  geneN
-
-and snp_data.csv contains the SNP data encoded as [0,1,2] in the following format:
-
-        sample1, sample2, ..., sampleN
-  SNP1  value ,  value , ...,  value
-  SNP2  value ,  value , ...,  value
-  ...
-  SNPQ
-
-Make sure panama is installed and available on your path for all nodes.
-Move the test-data files to your galaxy root test-data folder and
-create a directory galaxy-central/tools/eqtl_tools and put
-the panama_run.py and panama.xml files inside eqtl_tools directory.