Mercurial > repos > saket-choudhary > eqtl_tools
diff README @ 8:168b9ff24bcb default tip
Merge multiple heads.
author | Dave Bouvier <dave@bx.psu.edu> |
---|---|
date | Mon, 27 Jan 2014 14:07:41 -0500 |
parents | bef89654259a 88a4d4c31bb6 |
children |
line wrap: on
line diff
--- a/README Fri Jun 21 10:56:27 2013 +0530 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,30 +0,0 @@ - - -This is a wrapper for a set of eQTL analysis tools. - -Though, currently only PANAMA is supported. -PANAMA takes in input as : - -$panama expression_data.csv snp_data.csv - -Where expression_data.csv is a Comma Separated Values file containing the gene expression data -in the following format: - - sample1, sample2, ..., sampleN - gene1 value , value , ..., value - gene2 value , value , ..., value - ... - geneN - -and snp_data.csv contains the SNP data encoded as [0,1,2] in the following format: - - sample1, sample2, ..., sampleN - SNP1 value , value , ..., value - SNP2 value , value , ..., value - ... - SNPQ - -Make sure panama is installed and available on your path for all nodes. -Move the test-data files to your galaxy root test-data folder and -create a directory galaxy-central/tools/eqtl_tools and put -the panama_run.py and panama.xml files inside eqtl_tools directory.