# HG changeset patch
# User Saket Choudhary<saketkc@gmail.com>
# Date 1371733030 -19800
# Node ID 79ff64a36a318e1300fd115c887d3db10a9839fa
# Parent  54dddd7b44d05cb5108bdee6cf434ce9ee867ce6
Adding README

diff -r 54dddd7b44d0 -r 79ff64a36a31 README
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Thu Jun 20 18:27:10 2013 +0530
@@ -0,0 +1,28 @@
+This is a wrapper for a set of eQTL analysis tools.
+
+Though, currently only PANAMA is supported. 
+PANAMA takes in input as :
+
+$panama expression_data.csv snp_data.csv
+
+Where expression_data.csv is a Comma Separated Values file containing the gene expression data 
+in the following format:
+
+         sample1, sample2, ..., sampleN
+  gene1  value ,  value , ...,  value
+  gene2  value ,  value , ...,  value
+  ...
+  geneN
+
+and snp_data.csv contains the SNP data encoded as [0,1,2] in the following format:
+
+        sample1, sample2, ..., sampleN
+  SNP1  value ,  value , ...,  value
+  SNP2  value ,  value , ...,  value
+  ...
+  SNPQ
+
+Make sure panama is installed and available on your path for all nodes.
+Move the test-data files to your galaxy root test-data folder and
+create a directory galaxy-central/tools/eqtl_tools and put
+the panama_run.py and panama.xml files inside eqtl_tools directory.