Mercurial > repos > saket-choudhary > sift_web
comparison sift_web/test-data/sift_output_condensed.tsv @ 5:697e66764209 draft default tip
Uploaded
| author | saket-choudhary |
|---|---|
| date | Tue, 07 Oct 2014 19:19:11 -0400 |
| parents | |
| children |
comparison
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| 4:5cc3210369ac | 5:697e66764209 |
|---|---|
| 1 #ROW_NO. INPUT PROTEIN_ID LENGTH STRAND CODON_CHANGE POS RESIDUE_REF RESIDUE_ALT TYPE SCORE PREDICTION (cutoff=-2.5) #SEQ #CLUSTER SCORE PREDICTION (cutoff=0.05) MEDIAN_INFO #SEQ dbSNP_ID | |
| 2 1 1,100382265,C,G,user comment 1 ENSP00000294724 1532 1 TCC [C/G]GA CAT 1487 R G Single AA Change -1.75 Neutral 107 30 0.118 Tolerated 2.82 71 rs12118058 | |
| 3 2 1,100380997,A,G,user comment 2 ENSP00000294724 1532 1 GCA G[A/G]A AAA 1405 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.80 72 rs28730708 | |
| 4 3 22,30163533,A,C ENSP00000333278 132 1 ACG [A/C]GG GGA 49 R R Synonymous 0.00 Neutral 3 1 NA NA NA NA | |
| 5 4 X,12905093,A,T ENSP00000370034 1049 1 AAT G[A/T]A AGC 489 E V Single AA Change -1.99 Neutral 265 30 0.044 Damaging 2.87 154 | |
| 6 5 2,230633386,G,C ENSP00000373696 2040 -1 GAG [C/G]AG CAG 1958 Q E Single AA Change 0.46 Neutral 127 30 0.602 Tolerated 2.89 136 | |
| 7 6 1,100382265,C,A ENSP00000294724 1532 1 TCC [C/A]GA CAT 1487 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.82 71 | |
| 8 7 7,117199641,ATCA,. ENSP00000003084 1480 1 Frameshift NA NA 273 30 NA NA NA NA | |
| 9 8 7,117199647,TTT,. ENSP00000003084 1480 1 ATC [TTT/-] GGT 508 F . Deletion -13.79 Deleterious 273 30 NA NA NA NA rs121909001 | |
| 10 9 10,50184923,TGG,. ENSP00000320563 3184 1 GCC [TGG/-] GGC 3064 W . Deletion -6.39 Deleterious 101 30 NA NA NA NA | |
| 11 10 12,121438957,ACC,. ENSP00000443112 662 1 GAG [ACC/-] TTC 651 T . Deletion -3.66 Deleterious 158 30 NA NA NA NA | |
| 12 11 1,43217995,G,GCCA ENSP00000236040 804 -1 CCA [-/TGG] CAT 506 P PW Insertion -9.11 Deleterious 157 30 NA NA NA NA | |
| 13 12 10,102762472,G,GGCG ENSP00000359240 669 1 CAG [-/GCG] GAT 59 Q QA Insertion -3.26 Deleterious 136 30 NA NA NA NA | |
| 14 13 9,117856130,T,G record not found rs1513 | |
| 15 14 9,117856135,C,G record not found |