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view sift_web/test-data/sift_output_full.tsv @ 5:697e66764209 draft default tip
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| author | saket-choudhary |
|---|---|
| date | Tue, 07 Oct 2014 19:19:11 -0400 |
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#ROW_NO. INPUT PROTEIN_ID LENGTH STRAND CODON_CHANGE POS RESIDUE_REF RESIDUE_ALT TYPE SCORE PREDICTION (cutoff=-2.5) #SEQ #CLUSTER SCORE PREDICTION (cutoff=0.05) MEDIAN_INFO #SEQ dbSNP_ID 1 1,100382265,C,G,user comment 1 ENSP00000294724 1532 1 TCC [C/G]GA CAT 1487 R G Single AA Change -1.75 Neutral 107 30 0.118 Tolerated 2.82 71 rs12118058 1 1,100382265,C,G,user comment 1 ENSP00000354635 1515 1 TCC [C/G]GA CAT 1470 R G Single AA Change -1.75 Neutral 107 30 0.114 Tolerated 2.84 71 rs12118058 1 1,100382265,C,G,user comment 1 ENSP00000354971 1516 1 TCC [C/G]GA CAT 1471 R G Single AA Change -1.75 Neutral 107 30 0.108 Tolerated 2.83 73 rs12118058 1 1,100382265,C,G,user comment 1 ENSP00000355106 1532 1 TCC [C/G]GA CAT 1487 R G Single AA Change -1.75 Neutral 107 30 0.118 Tolerated 2.82 71 rs12118058 1 1,100382265,C,G,user comment 1 ENSP00000359180 1516 1 TCC [C/G]GA CAT 1471 R G Single AA Change -1.75 Neutral 107 30 0.108 Tolerated 2.83 73 rs12118058 1 1,100382265,C,G,user comment 1 ENSP00000359182 1532 1 TCC [C/G]GA CAT 1487 R G Single AA Change -1.75 Neutral 107 30 0.118 Tolerated 2.82 71 rs12118058 1 1,100382265,C,G,user comment 1 ENSP00000359184 1532 1 TCC [C/G]GA CAT 1487 R G Single AA Change -1.75 Neutral 107 30 0.118 Tolerated 2.82 71 rs12118058 2 1,100380997,A,G,user comment 2 ENSP00000294724 1532 1 GCA G[A/G]A AAA 1405 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.80 72 rs28730708 2 1,100380997,A,G,user comment 2 ENSP00000354635 1515 1 GCA G[A/G]A AAA 1388 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.82 72 rs28730708 2 1,100380997,A,G,user comment 2 ENSP00000354971 1516 1 GCA G[A/G]A AAA 1389 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.81 74 rs28730708 2 1,100380997,A,G,user comment 2 ENSP00000355106 1532 1 GCA G[A/G]A AAA 1405 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.80 72 rs28730708 2 1,100380997,A,G,user comment 2 ENSP00000359180 1516 1 GCA G[A/G]A AAA 1389 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.81 74 rs28730708 2 1,100380997,A,G,user comment 2 ENSP00000359182 1532 1 GCA G[A/G]A AAA 1405 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.80 72 rs28730708 2 1,100380997,A,G,user comment 2 ENSP00000359184 1532 1 GCA G[A/G]A AAA 1405 E G Single AA Change -4.58 Deleterious 107 30 0.004 Damaging 2.80 72 rs28730708 3 22,30163533,A,C ENSP00000332887 63 1 AAC G[A/C]G GGG 49 E A Single AA Change -3.11 Deleterious 87 30 0.020 Damaging 2.79 85 3 22,30163533,A,C ENSP00000333278 132 1 ACG [A/C]GG GGA 49 R R Synonymous 0.00 Neutral 3 1 NA NA NA NA 3 22,30163533,A,C ENSP00000384962 62 1 AAC G[A/C]G GGG 49 E A Single AA Change -3.05 Deleterious 85 30 0.057 Tolerated 3.02 57 3 22,30163533,A,C ENSP00000385696 82 1 AAC G[A/C]G GGG 49 E A Single AA Change -3.00 Deleterious 88 30 0.036 Damaging 3.07 83 4 X,12905093,A,T ENSP00000370034 1049 1 AAT G[A/T]A AGC 489 E V Single AA Change -1.99 Neutral 265 30 0.044 Damaging 2.87 154 5 2,230633386,G,C ENSP00000283943 1992 -1 GAG [C/G]AG CAG 1910 Q E Single AA Change 0.46 Neutral 127 30 0.811 Tolerated 2.90 99 5 2,230633386,G,C ENSP00000373696 2040 -1 GAG [C/G]AG CAG 1958 Q E Single AA Change 0.46 Neutral 127 30 0.602 Tolerated 2.89 136 5 2,230633386,G,C ENSP00000373697 1722 -1 GAG [C/G]AG CAG 1640 Q E Single AA Change 0.33 Neutral 129 30 1.000 Tolerated 2.96 95 5 2,230633386,G,C ENSP00000408330 187 -1 GAG [C/G]AG CAG 170 Q E Single AA Change 0.86 Neutral 120 30 1.000 Tolerated 2.82 62 6 1,100382265,C,A ENSP00000294724 1532 1 TCC [C/A]GA CAT 1487 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.82 71 6 1,100382265,C,A ENSP00000354635 1515 1 TCC [C/A]GA CAT 1470 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.84 71 6 1,100382265,C,A ENSP00000354971 1516 1 TCC [C/A]GA CAT 1471 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.83 73 6 1,100382265,C,A ENSP00000355106 1532 1 TCC [C/A]GA CAT 1487 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.82 71 6 1,100382265,C,A ENSP00000359180 1516 1 TCC [C/A]GA CAT 1471 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.83 73 6 1,100382265,C,A ENSP00000359182 1532 1 TCC [C/A]GA CAT 1487 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.82 71 6 1,100382265,C,A ENSP00000359184 1532 1 TCC [C/A]GA CAT 1487 R R Synonymous 0.00 Neutral 107 30 1.000 Tolerated 2.82 71 7 7,117199641,ATCA,. ENSP00000003084 1480 1 Frameshift NA NA 273 30 NA NA NA NA 7 7,117199641,ATCA,. ENSP00000389119 1438 1 Frameshift NA NA 273 30 NA NA NA NA 7 7,117199641,ATCA,. ENSP00000403677 1419 1 Frameshift NA NA 275 30 NA NA NA NA 8 7,117199647,TTT,. ENSP00000003084 1480 1 ATC [TTT/-] GGT 508 F . Deletion -13.79 Deleterious 273 30 NA NA NA NA rs121909001 8 7,117199647,TTT,. ENSP00000389119 1438 1 ATC [TTT/-] GGT 478 F . Deletion -13.79 Deleterious 273 30 NA NA NA NA rs121909001 8 7,117199647,TTT,. ENSP00000403677 1419 1 ATC [TTT/-] GGT 447 F . Deletion -14.12 Deleterious 275 30 NA NA NA NA rs121909001 9 10,50184923,TGG,. ENSP00000265453 1271 1 GCC [TGG/-] GGC 1151 W . Deletion -8.05 Deleterious 103 30 NA NA NA NA 9 10,50184923,TGG,. ENSP00000309314 2267 1 GCC [TGG/-] GGC 2155 W . Deletion -7.09 Deleterious 103 30 NA NA NA NA 9 10,50184923,TGG,. ENSP00000320563 3184 1 GCC [TGG/-] GGC 3064 W . Deletion -6.39 Deleterious 101 30 NA NA NA NA 9 10,50184923,TGG,. ENSP00000409696 3176 1 GCC [TGG/-] GGC 3064 W . Deletion -6.39 Deleterious 101 30 NA NA NA NA 9 10,50184923,TGG,. ENSP00000443499 624 1 GCC [TGG/-] GGC 527 W . Deletion -8.09 Deleterious 110 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000257555 631 1 GAG [ACC/-] TTC 620 T . Deletion -3.40 Deleterious 159 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000339938 572 1 GAG [ACC/-] TTC 561 T . Deletion -3.47 Deleterious 163 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000342683 521 1 GAG [ACC/-] TTC 510 T . Deletion -2.88 Deleterious 164 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000438300 523 1 GAG [ACC/-] TTC 512 T . Deletion -3.05 Deleterious 164 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000438531 452 1 GAG [ACC/-] TTC 441 T . Deletion -3.49 Deleterious 165 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000438804 638 1 GAG [ACC/-] TTC 627 T . Deletion -3.40 Deleterious 159 30 NA NA NA NA 10 12,121438957,ACC,. ENSP00000443112 662 1 GAG [ACC/-] TTC 651 T . Deletion -3.66 Deleterious 158 30 NA NA NA NA 11 1,43217995,G,GCCA ENSP00000236040 804 -1 CCA [-/TGG] CAT 506 P PW Insertion -9.11 Deleterious 157 30 NA NA NA NA 11 1,43217995,G,GCCA ENSP00000296388 736 -1 CCA [-/TGG] CAT 506 P PW Insertion -9.11 Deleterious 158 30 NA NA NA NA 11 1,43217995,G,GCCA ENSP00000380245 697 -1 CCA [-/TGG] CAT 506 P PW Insertion -9.14 Deleterious 160 30 NA NA NA NA 11 1,43217995,G,GCCA ENSP00000394294 152 -1 CCA [-/TGG] CAT 98 P PW Insertion -9.13 Deleterious 153 30 NA NA NA NA 11 1,43217995,G,GCCA ENSP00000408056 222 -1 CCA [-/TGG] CAT 114 P PW Insertion -9.17 Deleterious 153 30 NA NA NA NA 11 1,43217995,G,GCCA ENSP00000437795 601 -1 CCA [-/TGG] CAT 371 P PW Insertion -8.74 Deleterious 162 30 NA NA NA NA 12 10,102762472,G,GGCG ENSP00000314437 631 1 CAG [-/GCG] GAT 59 Q QA Insertion -3.15 Deleterious 137 30 NA NA NA NA 12 10,102762472,G,GGCG ENSP00000359240 669 1 CAG [-/GCG] GAT 59 Q QA Insertion -3.26 Deleterious 136 30 NA NA NA NA 12 10,102762472,G,GGCG ENSP00000359243 669 1 CAG [-/GCG] GAT 59 Q QA Insertion -3.26 Deleterious 136 30 NA NA NA NA 12 10,102762472,G,GGCG ENSP00000402042 199 1 CAG [-/GCG] GAT 59 Q QA Insertion -3.83 Deleterious 101 27 NA NA NA NA 12 10,102762472,G,GGCG ENSP00000407713 240 1 CAG [-/GCG] GAT 59 Q QA Insertion -3.24 Deleterious 113 30 NA NA NA NA 12 10,102762472,G,GGCG ENSP00000416972 221 1 CAG [-/GCG] GAT 59 Q QA Insertion -4.09 Deleterious 97 26 NA NA NA NA 13 9,117856130,T,G record not found rs1513 14 9,117856135,C,G record not found