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5
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1 ************************************************************************************
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2 ****** Add perl and xml wrapper files in tools/ d ******
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3 ************************************************************************************
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4
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5
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6 Download files with hg clone in tools/ directory, then you have these files availables (wrappers and scripts):
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7 sm_dos2unix.pl sm_dos2unix.xml
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8 and GalaxyPath.pm
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9
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10 Add GalaxyPath.pm file in /path/to/galaxy_sources/ directory
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11
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12 ************************************************************************************
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13 ****** tool_conf.xml file to update ******
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14 ************************************************************************************
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15
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16 Add a tag <tool> in your section "convert formats" (for instance) in your config/tool_conf.xml file:
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17 <tool file="my_tools/sm_dos2unix/sm_dos2unix.xml" />
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18
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19 ************************************************************************************
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20 ****** Add paths in galaxy.ini configuation file ******
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21 ************************************************************************************
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22
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23 Add a my_bin/ directory in galaxy repository with symbolic links to binaries:
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24 [galaxy-preprod@vm-galaxy-preprod my_bin]$ pwd
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25 /galaxydata/galaxy-preprod/my_bin
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26 lrwxrwxrwx 1 galaxy-prod wbioinfo 11 3 juin 2016 dos2unix -> dos2unix3.1
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27
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28
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29 Add paths to binaries and a section [workPath], at the end of galaxy.ini file:
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30 Dans geany ../../config/galaxy.ini &
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31 DOS=/galaxydata/galaxy-prod/my_bin/dos2unix
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