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1 <tool id="sm_dos2unix" name="Clean Windows files">
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2 <description>in order to be used on cluster (unix)</description>
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3 <command interpreter="perl">sm_dos2unix.pl
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4 $input
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5 $output
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6 </command>
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7 <inputs>
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8 <param format="fastq, fasta, txt, bam, sam, Csfasta, qual, bed, csv, xls, gff, gtf, pdf, vcf, xsq, bw, png, tabular" name="input" type="data" label="Input file"/>
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9 </inputs>
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10 <outputs>
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11 <data format="fastq, fasta, txt, bam, sam, Csfasta, qual, bed, csv, xls, gff, gtf, pdf, vcf, xsq, bw, png, tabular" name="output" label="{$input.name}-cleaned" />
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12 </outputs>
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13 <help>
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14 This command (dos2unix) cleans files from Windows in order to be used with unix.
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15 </help>
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16 </tool>
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