# HG changeset patch
# User sarahinraauzeville
# Date 1513089014 18000
# Node ID fc7c00da3eeb844784b6b36f93226b011986c0f8

Uploaded xml

diff -r 000000000000 -r fc7c00da3eeb sm_dos2unix.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sm_dos2unix.xml	Tue Dec 12 09:30:14 2017 -0500
@@ -0,0 +1,16 @@
+<tool id="sm_dos2unix" name="Clean Windows files">
+  <description>in order to be used on cluster (unix)</description>
+  <command interpreter="perl">sm_dos2unix.pl 
+  $input
+  $output
+  </command>
+  <inputs>
+    <param format="fastq, fasta, txt, bam, sam, Csfasta, qual, bed, csv, xls, gff, gtf, pdf, vcf, xsq, bw, png, tabular" name="input" type="data" label="Input file"/>
+  </inputs>
+  <outputs>
+    <data format="fastq, fasta, txt, bam, sam, Csfasta, qual, bed, csv, xls, gff, gtf, pdf, vcf, xsq, bw, png, tabular" name="output" label="{$input.name}-cleaned" />
+  </outputs>
+  <help>
+This command (dos2unix) cleans files from Windows in order to be used with unix.
+  </help>
+</tool>