--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README_tophat2_toolshed	Fri Feb 12 08:30:58 2016 -0500
@@ -0,0 +1,13 @@
+- Complete the PATH.ini file
+- To know your path to tophat2 bin, you could use this command line : 
+which tophat2
+
+- Create a "workspace" directory in /database/files/  
+- chmod 777 /path/to/database/files/workspace/
+- In sm_tophat2.pl file, complete the path to PATH.ini file
+my $cfg = Config::IniFiles->new( -file => "/path/to/PATH.ini" );
+
+- In your tool_conf.xml file, add this line in your RNAseq section :
+ <tool file="/path/to/sm_tophat2.xml" />  
+
+