# HG changeset patch
# User sarahinraauzeville
# Date 1455283847 18000
# Node ID 04b86e142e90679673c4ab3332398f8d6614a852
# Parent  03e27fba961c6b52c3eb829945614730aabe5253
Deleted selected files

diff -r 03e27fba961c -r 04b86e142e90 README_tophat2_toolshed
--- a/README_tophat2_toolshed	Fri Feb 12 08:30:33 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-- Create a PATH.ini file in galaxy-dist/ repository:
-- Add these 3 lines in your PATH.ini file :
-TOPHAT2_PATH=/path/to/bin/tophat2
-FILEPATH_DEV=/path/to/database/files/workspace/
-BOWTIE2_INDEXATION_PATH=/path/to/bin/bowtie2
-
-- To know your path to tophat2 bin, you could use this command line : 
-which tophat2
-
-- Create a "workspace" directory in /database/files/  
-- chmod 777 /path/to/database/files/workspace/
-- In sm_tophat2.pl file, complete the path to PATH.ini file
-my $cfg = Config::IniFiles->new( -file => "/path/to/PATH.ini" );
-
-- In your tool_conf.xml file, add this line in your RNAseq section :
- <tool file="/path/to/sm_tophat2.xml" />  
-
-