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1 ####################################################################
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2 How ton install Tax4Fun wrapper ?
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3 ####################################################################
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4
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5
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6 1 - Add Tax4Fun files (xml, perl and R) in tools directory
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7 Create a sm_Tax4Fun/ directory in tools/
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8 Get Tax4Fun files in this new directory
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9
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10
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11 2 - Add Tax4Fun wrapper in your Tool Menu
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12
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13 Add TAX4FUN wrapper in your tool_conf.xml file :
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14 geany ../../my_config/my_tool_conf.xml &
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15 in your FROGS section:
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16 <tool file="my_tools/sm_Tax4Fun/sm_Tax4Fun.xml" />
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17
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18
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19 3 - Create a symbolique link for the R script
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20 ln -s /path/to/tools/sm_Tax4Fun/sm_Tax4Fun.R /path/to/bin/scripts_R/.
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21 and add the path in your galaxy.ini file :
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22 [workPath]
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23 SCRIPTS_R_path=/galaxydata/galaxy-preprod/my_bin/scripts_R/
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24
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25
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26 4 - Change pah to SILVA123 in sm_Tax4Fun.xml file
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27
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28 <param name="reference" type="select" label="Folder location of the unzipped reference data">
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29 <option value="/Path/to/sm_Tax4Fun/SILVA123/">SILVA123</option>
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30 <option value="No">OTHER TODO</option>
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31 </param>
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