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comparison tools/annovar/annovar.xml @ 9:f7ff063c738e draft default tip

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bugfix for COSMIC70 not giving output
author saskia-hiltemann
date Fri, 04 Mar 2016 11:56:10 -0500
parents d6af2a78617f
children
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8:d6af2a78617f 9:f7ff063c738e
18 --cosmic63 "${cosmic63}" 18 --cosmic63 "${cosmic63}"
19 --cosmic64 "${cosmic64}" 19 --cosmic64 "${cosmic64}"
20 --cosmic65 "${cosmic65}" 20 --cosmic65 "${cosmic65}"
21 --cosmic67 "${cosmic67}" 21 --cosmic67 "${cosmic67}"
22 --cosmic68 "${cosmic68}" 22 --cosmic68 "${cosmic68}"
23 --cosmic70 "${cosmic70}"
23 --outall "${annotated}" 24 --outall "${annotated}"
24 --outinvalid "${invalid}" 25 --outinvalid "${invalid}"
25 --dorunannovar "${dorun}" 26 --dorunannovar "${dorun}"
26 --inputfile "${infile}" 27 --inputfile "${infile}"
27 --buildver "${reference.fields.dbkey}" 28 --buildver "${reference.fields.dbkey}"