Mercurial > repos > saskia-hiltemann > annovar

view tool_dependencies.xml~ @ 2:565c0e690238 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Added support for LJB2, COSMIC67, CLINVAR and NCI60. Fixed dgv annotation to use new UCSC table dgvMerged instead.
author saskia-hiltemann
date Mon, 18 Nov 2013 10:32:33 -0500
parents 7d9353127f8a
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
	<package name="cgatools17" version="1"> 
        <install version="1.0">
            <actions>                				
                <action type="download_by_url">http://sourceforge.net/projects/cgatools/files/1.7.1/cgatools-1.7.1.5-linux_binary-x86_64.tar.gz</action>
				<action type="shell_command"> chmod a+x bin/cgatools</action>
                <action type="move_file">
                	<source>bin/cgatools</source>
                	<destination>$INSTALL_DIR/bin</destination>
                </action>	    
				<action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
                </action>            	               			
            </actions>
        </install>
        <readme>
			Downloads and installs the cgatools binary. 
        </readme>
    </package>      
</tool_dependency>