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comparison tools/cgatools17/testvariants_v17.xml @ 4:418343b53afd draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools commit 8fc6d78bd30e022a200c841a3684e615a47ffc42
author yhoogstrate
date Tue, 10 Nov 2015 11:18:20 -0500
parents 91e163b708d3
children 64017ce705b6
comparison
equal deleted inserted replaced
3:91e163b708d3 4:418343b53afd
9 9
10 <command> 10 <command>
11 cgatools testvariants 11 cgatools testvariants
12 --beta 12 --beta
13 --reference 13 --reference
14 14
15 #if $reference_gene_sets_source.source_select == "indexed_filtered" 15 #if $reference_gene_sets_source.source_select == "indexed_filtered"
16 ${reference_gene_sets_source.crr.fields.crr_path} 16 ${reference_gene_sets_source.crr.fields.crr_path}
17 #else if $reference_gene_sets_source.source_select == "history" 17 #else if $reference_gene_sets_source.source_select == "history"
18 ${reference_gene_sets_source.crr} 18 ${reference_gene_sets_source.crr}
19 #end if 19 #end if
28 28
29 <inputs> 29 <inputs>
30 <!--form field to select crr file--> 30 <!--form field to select crr file-->
31 31
32 <conditional name="reference_gene_sets_source"> 32 <conditional name="reference_gene_sets_source">
33 <param name="source_select" type="select" label="GFF/GTF Source"> 33 <param name="source_select" type="select" label="Genome reference (in complete genomics CRR format)" help="Some indexes are available at ftp://ftp.completegenomics.com/ReferenceFiles/">
34 <option value="indexed_filtered">Use a built-in index (which fits your reference)</option> 34 <option value="indexed_filtered">Use a built-in index (which fits your reference)</option>
35 <option value="history">Use reference from the history</option> 35 <option value="history">Use reference from the history</option>
36 </param> 36 </param>
37 <when value="indexed_filtered"> 37 <when value="indexed_filtered">
38 <param name="crr" type="select" label="Reference Build"> 38 <param name="crr" type="select" label="Reference Build">