Mercurial > repos > saskia-hiltemann > cgatools_v17

comparison tools/cgatools17/listvariants_v17.xml @ 15:b5c879e950f5 draft default tip

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools commit 402ebee914f2286aa9d98223f501f06c1e4b9c22-dirty
author yhoogstrate
date Fri, 20 Nov 2015 03:50:36 -0500
parents 59a2f9ad76dd
children
comparison
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14:59a2f9ad76dd 15:b5c879e950f5
11 <command> <!--run executable--> 11 <command> <!--run executable-->
12 cgatools 12 cgatools
13 listvariants 13 listvariants
14 --beta 14 --beta
15 15
16 --reference
16 #if $reference_gene_sets_source.source_select == "indexed_filtered" 17 #if $reference_gene_sets_source.source_select == "indexed_filtered"
17 ${reference_gene_sets_source.crr.fields.crr_path} 18 ${reference_gene_sets_source.crr.fields.crr_path}
18 #else if $reference_gene_sets_source.source_select == "history" 19 #else if $reference_gene_sets_source.source_select == "history"
19 ${reference_gene_sets_source.crr} 20 ${reference_gene_sets_source.crr}
20 #end if 21 #end if
59 </repeat> 60 </repeat>
60 </when> 61 </when>
61 <when value="mastervar"> 62 <when value="mastervar">
62 <repeat name="varfiles" title="Variant files" min="1"> 63 <repeat name="varfiles" title="Variant files" min="1">
63 <param name="input" type="data" format="cg_mastervar" label="Dataset"/> 64 <param name="input" type="data" format="cg_mastervar" label="Dataset"/>
64 </repeat> 65 </repeat>
65 </when> 66 </when>
66 </conditional> 67 </conditional>
67 68
68 <param name="longvar" type="select" label="List long variants?"> 69 <param name="longvar" type="select" label="List long variants?">
69 <option value="" selected="true">no</option> 70 <option value="" selected="true">no</option>
77 </param> 78 </param>
78 <when value="yes"> 79 <when value="yes">
79 <param name="list" type="data" format="tabular" label="Variant listing"/> 80 <param name="list" type="data" format="tabular" label="Variant listing"/>
80 </when> 81 </when>
81 </conditional> 82 </conditional>
82 <param name="fname" type="text" value="" label="Prefix for your output file" help="Optional"/> 83 <param name="fname" type="text" value="" label="Prefix for your output file" help="Optional"/>
83 </inputs> 84 </inputs>
84 85
85 <outputs> 86 <outputs>
86 <data format="tabular" name="output" label="$fname ${tool.name} on ${on_string}"/> 87 <data format="tabular" name="output" label="$fname ${tool.name} on ${on_string}"/>
87 </outputs> 88 </outputs>