# HG changeset patch
# User yhoogstrate
# Date 1447235944 18000
# Node ID ff641b41735f2a07b80139e8dd167c8b82cdd3ed
# Parent  3c1b706e7f5f0c5152abe55453c25ff1c31c43cd
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools commit b55aad42004c821b66aaa7d871ebf314a4adf7f4-dirty

diff -r 3c1b706e7f5f -r ff641b41735f tools/cgatools17/listvariants_v17.xml
--- a/tools/cgatools17/listvariants_v17.xml	Wed Nov 11 04:20:02 2015 -0500
+++ b/tools/cgatools17/listvariants_v17.xml	Wed Nov 11 04:59:04 2015 -0500
@@ -13,10 +13,10 @@
             listvariants
             --beta
 
-            #if $reference_gene_sets_source.source_select == "indexed_filtered"
-                ${reference_gene_sets_source.crr.fields.crr_path}
-            #else if $reference_gene_sets_source.source_select == "history"
-                ${reference_gene_sets_source.crr}
+            #if $reference_genome_source.source_select == "indexed_filtered"
+                ${reference_genome_source.crr.fields.crr_path}
+            #else if $reference_genome_source.source_select == "history"
+                ${reference_genome_source.crr}
             #end if
             
             --output $output
@@ -33,8 +33,8 @@
 
     <inputs>
     <!--form field to select crr file-->
-        <conditional name="reference_gene_sets_source">
-            <param name="source_select" type="select" label="GFF/GTF Source">
+        <conditional name="reference_genome_source">
+            <param name="source_select" type="select" label="CRR Genome reference Source">
                 <option value="indexed_filtered">Use a built-in index (which fits your reference)</option>
                 <option value="history">Use reference from the history</option>
             </param>
diff -r 3c1b706e7f5f -r ff641b41735f tools/cgatools17/testvariants_v17.xml
--- a/tools/cgatools17/testvariants_v17.xml	Wed Nov 11 04:20:02 2015 -0500
+++ b/tools/cgatools17/testvariants_v17.xml	Wed Nov 11 04:59:04 2015 -0500
@@ -12,10 +12,10 @@
         --beta
         --reference
         
-            #if $reference_gene_sets_source.source_select == "indexed_filtered"
-                ${reference_gene_sets_source.crr.fields.crr_path}
-            #else if $reference_gene_sets_source.source_select == "history"
-                ${reference_gene_sets_source.crr}
+            #if $reference_genome_source.source_select == "indexed_filtered"
+                ${reference_genome_source.crr.fields.crr_path}
+            #else if $reference_genome_source.source_select == "history"
+                ${reference_genome_source.crr}
             #end if
             
         --output $output
@@ -29,8 +29,8 @@
     <inputs>
     <!--form field to select crr file-->
     
-        <conditional name="reference_gene_sets_source">
-            <param name="source_select" type="select" label="GFF/GTF Source">
+        <conditional name="reference_genome_source">
+            <param name="source_select" type="select" label="CRR Genome reference Source">
                 <option value="indexed_filtered">Use a built-in index (which fits your reference)</option>
                 <option value="history">Use reference from the history</option>
             </param>